BLASTX nr result

ID: Bupleurum21_contig00020038 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00020038
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281739.1| PREDICTED: 50S ribosomal protein L17 [Vitis ...   197   7e-49
emb|CAN65254.1| hypothetical protein VITISV_026602 [Vitis vinifera]   197   7e-49
ref|XP_002307023.1| predicted protein [Populus trichocarpa] gi|2...   196   1e-48
ref|XP_002873421.1| ribosomal protein L17 family protein [Arabid...   196   2e-48
ref|XP_002310514.1| predicted protein [Populus trichocarpa] gi|2...   192   2e-47

>ref|XP_002281739.1| PREDICTED: 50S ribosomal protein L17 [Vitis vinifera]
           gi|296088573|emb|CBI37564.3| unnamed protein product
           [Vitis vinifera]
          Length = 160

 Score =  197 bits (501), Expect = 7e-49
 Identities = 95/102 (93%), Positives = 98/102 (96%)
 Frame = +3

Query: 3   AARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE 182
           AARRA AFVRGDDVIHKLFTELAYRYKDRAGGYTR+LRTRIRVGDAAPMAYIEFIDRENE
Sbjct: 59  AARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENE 118

Query: 183 LRQSKPATPQPPQRAPLDPWTRSRLSKQFAPPKEEKSSDSDI 308
           LRQSKPATPQPPQR PLDPWTRSRL KQFAPPKE+KSSD +I
Sbjct: 119 LRQSKPATPQPPQRVPLDPWTRSRLCKQFAPPKEDKSSDPEI 160


>emb|CAN65254.1| hypothetical protein VITISV_026602 [Vitis vinifera]
          Length = 207

 Score =  197 bits (501), Expect = 7e-49
 Identities = 95/102 (93%), Positives = 98/102 (96%)
 Frame = +3

Query: 3   AARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE 182
           AARRA AFVRGDDVIHKLFTELAYRYKDRAGGYTR+LRTRIRVGDAAPMAYIEFIDRENE
Sbjct: 106 AARRAAAFVRGDDVIHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENE 165

Query: 183 LRQSKPATPQPPQRAPLDPWTRSRLSKQFAPPKEEKSSDSDI 308
           LRQSKPATPQPPQR PLDPWTRSRL KQFAPPKE+KSSD +I
Sbjct: 166 LRQSKPATPQPPQRVPLDPWTRSRLCKQFAPPKEDKSSDPEI 207


>ref|XP_002307023.1| predicted protein [Populus trichocarpa] gi|222856472|gb|EEE94019.1|
           predicted protein [Populus trichocarpa]
          Length = 160

 Score =  196 bits (499), Expect = 1e-48
 Identities = 94/102 (92%), Positives = 99/102 (97%)
 Frame = +3

Query: 3   AARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE 182
           AARRA AFVRGDDVIHKLF+E+AYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE
Sbjct: 59  AARRAAAFVRGDDVIHKLFSEMAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE 118

Query: 183 LRQSKPATPQPPQRAPLDPWTRSRLSKQFAPPKEEKSSDSDI 308
           LRQSKP TPQPPQRAPLDPWTRSRL++QFAPPKEEKSSD +I
Sbjct: 119 LRQSKPPTPQPPQRAPLDPWTRSRLTRQFAPPKEEKSSDPEI 160


>ref|XP_002873421.1| ribosomal protein L17 family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297319258|gb|EFH49680.1| ribosomal protein
           L17 family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 160

 Score =  196 bits (498), Expect = 2e-48
 Identities = 93/102 (91%), Positives = 98/102 (96%)
 Frame = +3

Query: 3   AARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE 182
           AARRA  FVRGDDV+HK+FTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE
Sbjct: 59  AARRAAGFVRGDDVLHKIFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE 118

Query: 183 LRQSKPATPQPPQRAPLDPWTRSRLSKQFAPPKEEKSSDSDI 308
           LRQSKPATPQPPQR PLDPW RSRL+KQFAPPKEEKSSDS++
Sbjct: 119 LRQSKPATPQPPQRVPLDPWERSRLTKQFAPPKEEKSSDSEL 160


>ref|XP_002310514.1| predicted protein [Populus trichocarpa] gi|222853417|gb|EEE90964.1|
           predicted protein [Populus trichocarpa]
          Length = 160

 Score =  192 bits (488), Expect = 2e-47
 Identities = 92/102 (90%), Positives = 98/102 (96%)
 Frame = +3

Query: 3   AARRAGAFVRGDDVIHKLFTELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE 182
           A+RRA AFVRGDDVIHKLF+ELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE
Sbjct: 59  ASRRAAAFVRGDDVIHKLFSELAYRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENE 118

Query: 183 LRQSKPATPQPPQRAPLDPWTRSRLSKQFAPPKEEKSSDSDI 308
           LRQSKP TPQPPQRAP+DPWTRSRL++Q APPKEEKSSD +I
Sbjct: 119 LRQSKPPTPQPPQRAPMDPWTRSRLTRQCAPPKEEKSSDPEI 160


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