BLASTX nr result

ID: Bupleurum21_contig00019278 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00019278
         (310 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270335.1| PREDICTED: protein VERNALIZATION INSENSITIVE...    91   1e-16
emb|CBI17843.3| unnamed protein product [Vitis vinifera]               87   1e-15
gb|AFD98847.1| vernalization insensitive 3 [Solanum lycopersicum]      85   7e-15
ref|XP_002531036.1| conserved hypothetical protein [Ricinus comm...    82   3e-14
ref|XP_002329653.1| predicted protein [Populus trichocarpa] gi|2...    81   8e-14

>ref|XP_002270335.1| PREDICTED: protein VERNALIZATION INSENSITIVE 3-like [Vitis
           vinifera]
          Length = 738

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 49/102 (48%), Positives = 64/102 (62%)
 Frame = -1

Query: 307 CTLFEPNAKFSLSGLSPATSYLVKVVYFDDNKKLRTSEVQTQTCSDGVPNPKGVEAERSL 128
           CT+  PN +F+ S L+P+T Y+ KVV F D ++L   EVQ  T S G   PK + AERS 
Sbjct: 397 CTMLAPNKRFTFSDLTPSTEYVFKVVSFQDTRELGMGEVQFSTSSSGDDIPKSLVAERSQ 456

Query: 127 SPTINGSSLSNPSSVEDESNHNVKSCTTEDANQKSMHVPCCK 2
           SP  N SSLSNPSSVEDE+N NV     ++ N++  +   CK
Sbjct: 457 SPATNCSSLSNPSSVEDETN-NVTPYHDQNENREDNYPGYCK 497


>emb|CBI17843.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 44/81 (54%), Positives = 55/81 (67%)
 Frame = -1

Query: 307 CTLFEPNAKFSLSGLSPATSYLVKVVYFDDNKKLRTSEVQTQTCSDGVPNPKGVEAERSL 128
           CT+  PN +F+ S L+P+T Y+ KVV F D ++L   EVQ  T S G   PK + AERS 
Sbjct: 364 CTMLAPNKRFTFSDLTPSTEYVFKVVSFQDTRELGMGEVQFSTSSSGDDIPKSLVAERSQ 423

Query: 127 SPTINGSSLSNPSSVEDESNH 65
           SP  N SSLSNPSSVEDE+N+
Sbjct: 424 SPATNCSSLSNPSSVEDETNN 444


>gb|AFD98847.1| vernalization insensitive 3 [Solanum lycopersicum]
          Length = 739

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 51/108 (47%), Positives = 63/108 (58%), Gaps = 6/108 (5%)
 Frame = -1

Query: 310 TCTLFEPNAKFSLSGLSPATSYLVKVVYFDDNKKLRTSEVQTQTCSDGVPNP------KG 149
           T TLF PN +F LS L PAT Y++K+V  D  K+L   EV  Q CS    N       K 
Sbjct: 394 TRTLFSPNTRFVLSDLMPATDYVLKIVSLDSKKELGMFEV--QFCSSKAENELSNLNMKS 451

Query: 148 VEAERSLSPTINGSSLSNPSSVEDESNHNVKSCTTEDANQKSMHVPCC 5
           +E ERS SP  N S+LSNPSSVEDE+N N+  C+ E  N+    + CC
Sbjct: 452 LEVERSQSPPTNCSNLSNPSSVEDETN-NIVLCSNEAENRGDNCLSCC 498


>ref|XP_002531036.1| conserved hypothetical protein [Ricinus communis]
           gi|223529389|gb|EEF31353.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 710

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 51/104 (49%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
 Frame = -1

Query: 310 TCTLFEPNAKFSLSGLSPATSYLVKVVYFDDNKK-LRTSEVQTQTCSDGVPNPKGVEAER 134
           TCTLF PN +F ++GL  AT Y  K V F+D ++ + T EV+  T  D VPN   VE  R
Sbjct: 369 TCTLFVPNTRFVVTGLCSATDYHFKAVSFNDERREMGTCEVRCCT-QDEVPNCSAVE--R 425

Query: 133 SLSPTINGSSLSNPSSVEDESNHNVKSCTTEDANQKSMHVPCCK 2
           S SP  N SSLSNPSSVEDE+NHN   C  +  N+   +   CK
Sbjct: 426 SQSPATNCSSLSNPSSVEDETNHNA-PCGDQTVNRAYNYPSYCK 468


>ref|XP_002329653.1| predicted protein [Populus trichocarpa] gi|222870534|gb|EEF07665.1|
           predicted protein [Populus trichocarpa]
          Length = 679

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 49/106 (46%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
 Frame = -1

Query: 310 TCTLFEPNAKFSLSGLSPATSYLVKVVYFDDNKKLRTSEVQTQTCSDGVPNPKGVE---A 140
           TC LF PN ++ ++GLSPAT Y  KVV F+  ++L T EVQ   CS G+   + +     
Sbjct: 385 TCRLFLPNTRYVVAGLSPATEYHFKVVPFNGVRELGTCEVQ---CSTGMTQEEVLNYSIV 441

Query: 139 ERSLSPTINGSSLSNPSSVEDESNHNVKSCTTEDANQKSMHVPCCK 2
           ERS SP  N SSLSNPSSVEDE+N+N   C  +  N+   +  C K
Sbjct: 442 ERSQSPNTNCSSLSNPSSVEDETNNN-PPCNDQIVNRADNYRTCLK 486


Top