BLASTX nr result
ID: Bupleurum21_contig00019248
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00019248
(1605 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 397 e-108
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 379 e-102
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 376 e-102
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 367 5e-99
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 363 5e-98
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 397 bits (1021), Expect = e-108
Identities = 199/457 (43%), Positives = 286/457 (62%), Gaps = 5/457 (1%)
Frame = -1
Query: 1356 EELFLRQKSRISWLKLGDGNNRYFFNSCKGRWNQNKLLAICDDNGSVITDHGQVSSSAVE 1177
EE FL+Q+S++ WL +GD NN+ F + R QN + I +GSV + ++ + A
Sbjct: 241 EEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVASQEEKIKTEAEH 300
Query: 1176 HFKNIL----GSAKPVAPFPDHLQLP-KISIANKEYLVAEVSHDEIFQTLKAMPKNKCPG 1012
HF+ L + +A LP + S ++KE L VS +EI + + +MP +K PG
Sbjct: 301 HFREFLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPG 360
Query: 1011 PDGLTVEFFLAAWHIVGTDVVKGVCSFFNSLDLPRCVNSTAIALIPKVNNPSDFSQYRPI 832
PDG T EF+ AW+I+G + + + SFF LP+ +NST +ALIPK + YRPI
Sbjct: 361 PDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPI 420
Query: 831 SCCNILYKCISKILANRLKACLHEIISPNQSTFVPKRSIGDNILLAQSICKNYHLSSGIP 652
SCCN+LYK ISKI+ANRLK L + I NQS FV R + +N+LLA I K+YH S
Sbjct: 421 SCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSS 480
Query: 651 RCTIKLDISKAFDSLNWNFIVNTLNAMNFPPIFISWISKCISSCMFSVKVNGSLEGFFKG 472
RC +K+DISKAFDS+ W F++N L AMNFPP F WI+ CI++ FSV+VNG L G F
Sbjct: 481 RCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSS 540
Query: 471 ESGVRQGDPISPYLFIIAMEVLTAHLKVAAENPNFAFHPMCKRVGLNHIIFADDVLLFSS 292
+RQG +SPYLF+I+M+VL+ L A F +HP C+ +GL H+ FADD+++ S
Sbjct: 541 ARELRQGCSLSPYLFVISMDVLSKMLDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSD 600
Query: 291 GNIDSINVLLSAVYSFSSISGLNLNVQKCSLFFGNVPPNEAEQIVESTGISLGSLPISYL 112
G + SI+ ++ +Y F+ SGL ++++K +++ V + ++IV+ +G LP+ YL
Sbjct: 601 GKVRSIDGIVKVLYEFAKWSGLKISMEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYL 660
Query: 111 GLPLITSRLRSQQCAPLISRLCHRIGCWTSHFLSFAG 1
GLPL++ RL + C PLI +L +I WTS FLSFAG
Sbjct: 661 GLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAG 697
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 379 bits (972), Expect = e-102
Identities = 193/459 (42%), Positives = 278/459 (60%), Gaps = 7/459 (1%)
Frame = -1
Query: 1356 EELFLRQKSRISWLKLGDGNNRYFFNSCKGRWNQNKLLAICDDNGSVITDHGQVSSSAVE 1177
EE FL+QKS++ W+ +GDGNN YF + + R +N + I N + ++ A
Sbjct: 650 EEGFLKQKSKLHWMNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAER 709
Query: 1176 HFKNILGSAKPVAPFPD-------HLQLPKISIANKEYLVAEVSHDEIFQTLKAMPKNKC 1018
F L + F +L + S+ ++ L EV+ +EI + L AMP NK
Sbjct: 710 FFNEFLN--RQSGDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKS 767
Query: 1017 PGPDGLTVEFFLAAWHIVGTDVVKGVCSFFNSLDLPRCVNSTAIALIPKVNNPSDFSQYR 838
PGPDG T EFF A W + G D + + SFF LP+ +N+T +ALIPK + + YR
Sbjct: 768 PGPDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYR 827
Query: 837 PISCCNILYKCISKILANRLKACLHEIISPNQSTFVPKRSIGDNILLAQSICKNYHLSSG 658
PISCCN+LYK ISKILANRLK L I NQS FV +R + +N+LLA + K+YH S
Sbjct: 828 PISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESV 887
Query: 657 IPRCTIKLDISKAFDSLNWNFIVNTLNAMNFPPIFISWISKCISSCMFSVKVNGSLEGFF 478
PRC +K+DISKAFDS+ W F++NTL A+NFP F WI CIS+ FSV+VNG L GFF
Sbjct: 888 TPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFF 947
Query: 477 KGESGVRQGDPISPYLFIIAMEVLTAHLKVAAENPNFAFHPMCKRVGLNHIIFADDVLLF 298
G+RQG +SPYLF+I M VL+ + AA + N +HP C+++GL H+ FADD+++F
Sbjct: 948 GSSRGLRQGCALSPYLFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVF 1007
Query: 297 SSGNIDSINVLLSAVYSFSSISGLNLNVQKCSLFFGNVPPNEAEQIVESTGISLGSLPIS 118
G+ SI +++ F+ SGL ++++K +++ V ++ Q + S + G LP+
Sbjct: 1008 VDGHQWSIEGVINVFKEFAGRSGLQISLEKSTIYLAGVSASDRVQTLSSFPFANGQLPVR 1067
Query: 117 YLGLPLITSRLRSQQCAPLISRLCHRIGCWTSHFLSFAG 1
YLGLPL+T ++ + +PLI + +I WT+ LS+AG
Sbjct: 1068 YLGLPLLTKQMTTADYSPLIEAVKTKISSWTARSLSYAG 1106
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 376 bits (966), Expect = e-102
Identities = 198/483 (40%), Positives = 286/483 (59%), Gaps = 6/483 (1%)
Frame = -1
Query: 1431 NIIKSSDQLIMESNLIASLQSSLS-KEELFLRQKSRISWLKLGDGNNRYFFNSCKGRWNQ 1255
N+ S + E N S ++ EE +L+QKS++ W ++GD N + F + R
Sbjct: 327 NLTNPSSMAMEEENAAYSRWDRVAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAH 386
Query: 1254 NKLLAICDDNGSVITDHGQVSSSAVEHFKNIL----GSAKPVAPFPDHLQLP-KISIANK 1090
N + I ++G V T ++ + A F+ L + V LP + S A++
Sbjct: 387 NTIREILSNDGIVKTKGDEIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVRCSDADQ 446
Query: 1089 EYLVAEVSHDEIFQTLKAMPKNKCPGPDGLTVEFFLAAWHIVGTDVVKGVCSFFNSLDLP 910
+ L+ V+ +EI + L MP +K PGPDG T EFF A W I+G + V SFF LP
Sbjct: 447 QSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLP 506
Query: 909 RCVNSTAIALIPKVNNPSDFSQYRPISCCNILYKCISKILANRLKACLHEIISPNQSTFV 730
+ +NST +ALIPK + YRPISCCN+LYK ISKI+ANRLK L + I+ NQS FV
Sbjct: 507 KGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFV 566
Query: 729 PKRSIGDNILLAQSICKNYHLSSGIPRCTIKLDISKAFDSLNWNFIVNTLNAMNFPPIFI 550
R + +N+LLA + K+YH + RC IK+DISKAFDS+ W F++N + FP FI
Sbjct: 567 KDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFI 626
Query: 549 SWISKCISSCMFSVKVNGSLEGFFKGESGVRQGDPISPYLFIIAMEVLTAHLKVAAENPN 370
WI+ CI++ FSV+VNG L G+F+ G+RQG +SPYLF+I M+VL+ L AA +
Sbjct: 627 HWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKMLDKAAAARH 686
Query: 369 FAFHPMCKRVGLNHIIFADDVLLFSSGNIDSINVLLSAVYSFSSISGLNLNVQKCSLFFG 190
F +HP CK +GL H+ FADD+++ S G I SI ++ F+ SGL ++++K +++
Sbjct: 687 FGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLA 746
Query: 189 NVPPNEAEQIVESTGISLGSLPISYLGLPLITSRLRSQQCAPLISRLCHRIGCWTSHFLS 10
+ ++ + S G LP+ YLGLPLIT RL + C PL+ ++ RIG WTS FLS
Sbjct: 747 GLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLS 806
Query: 9 FAG 1
+AG
Sbjct: 807 YAG 809
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 367 bits (942), Expect = 5e-99
Identities = 180/469 (38%), Positives = 287/469 (61%), Gaps = 3/469 (0%)
Frame = -1
Query: 1398 ESNLIASLQSSLSKEELFLRQKSRISWLKLGDGNNRYFFNSCKGRWNQNKLLAICDDNGS 1219
E +LIA L+ + +E L+QKSRI WL LGD N+++FF + K R +NK++ + +D G
Sbjct: 329 EKDLIAQLRKWSTIDESILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLLQNDRGD 388
Query: 1218 VITDHGQVSSSAVEHFKNILGSAKPVAPFPD-HLQL--PKISIANKEYLVAEVSHDEIFQ 1048
+T++ ++ + ++ +LG++ D H+ K+S + LV ++ EI Q
Sbjct: 389 QLTENTEIQNEICNFYRRLLGTSSSQLEAIDLHVVRVGAKLSATSCAQLVQPITIQEIDQ 448
Query: 1047 TLKAMPKNKCPGPDGLTVEFFLAAWHIVGTDVVKGVCSFFNSLDLPRCVNSTAIALIPKV 868
L + K PG DG FF +W ++ ++ +G+ FF + + + +N TA+ LIPK+
Sbjct: 449 ALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKI 508
Query: 867 NNPSDFSQYRPISCCNILYKCISKILANRLKACLHEIISPNQSTFVPKRSIGDNILLAQS 688
+ YRPI+CC+ LYK ISKIL RL+A + E++ Q+ F+P+R IGDNILLA
Sbjct: 509 DEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATE 568
Query: 687 ICKNYHLSSGIPRCTIKLDISKAFDSLNWNFIVNTLNAMNFPPIFISWISKCISSCMFSV 508
+ + Y+ PRC IK+DI KA+DS+ W F+ + L + FP +FI WI C+ + +S+
Sbjct: 569 LIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKTVSYSI 628
Query: 507 KVNGSLEGFFKGESGVRQGDPISPYLFIIAMEVLTAHLKVAAENPNFAFHPMCKRVGLNH 328
+NG F + G+RQGDP+SP+LF ++ME L+ + ++P F FHP C+R+ L H
Sbjct: 629 LLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCMGNMCKDPEFNFHPKCERIKLTH 688
Query: 327 IIFADDVLLFSSGNIDSINVLLSAVYSFSSISGLNLNVQKCSLFFGNVPPNEAEQIVEST 148
++FADD+L+F+ + SI+ +++A SFS SGL +++K ++FG V EAEQ+ +
Sbjct: 689 LMFADDLLMFARADASSISKIMAAFNSFSKASGLQASIEKSCIYFGGVCHEEAEQLADRI 748
Query: 147 GISLGSLPISYLGLPLITSRLRSQQCAPLISRLCHRIGCWTSHFLSFAG 1
+ +GSLP YLG+PL + +L QC PLI ++ R W +H LS+AG
Sbjct: 749 QMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQGWVAHLLSYAG 797
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 363 bits (933), Expect = 5e-98
Identities = 190/442 (42%), Positives = 275/442 (62%), Gaps = 5/442 (1%)
Frame = -1
Query: 1311 LGDGNNRYFFNSCKGRWNQNKLLAICDDNGSVITDHGQVSSSAVEHFKNILGS--AKPVA 1138
+GD NN+ F + R N + I +G V+T + + AV +F++ L + A
Sbjct: 89 VGDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEG 148
Query: 1137 PFPDHLQ--LP-KISIANKEYLVAEVSHDEIFQTLKAMPKNKCPGPDGLTVEFFLAAWHI 967
+ L+ LP + S + L V+ +EI + + +MPK+K PGPDG T EF+ A+W I
Sbjct: 149 MCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEI 208
Query: 966 VGTDVVKGVCSFFNSLDLPRCVNSTAIALIPKVNNPSDFSQYRPISCCNILYKCISKILA 787
+G +V+ + SFF LP+ VNST +ALIPK + YRPISCCN+LYK ISKILA
Sbjct: 209 IGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILA 268
Query: 786 NRLKACLHEIISPNQSTFVPKRSIGDNILLAQSICKNYHLSSGIPRCTIKLDISKAFDSL 607
NRLK L + I NQS FV R + +N+LLA + K+YH S RC +K+DISKAFDSL
Sbjct: 269 NRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSL 328
Query: 606 NWNFIVNTLNAMNFPPIFISWISKCISSCMFSVKVNGSLEGFFKGESGVRQGDPISPYLF 427
W+F+ + L AMNFP FI WIS C+S+ FS++VNG L G+F+ G+RQG +SPYLF
Sbjct: 329 QWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLF 388
Query: 426 IIAMEVLTAHLKVAAENPNFAFHPMCKRVGLNHIIFADDVLLFSSGNIDSINVLLSAVYS 247
+I+M+VL+ L AA F +HP CK +GL H+ FADD+++ + G I S++ ++ +
Sbjct: 389 VISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQ 448
Query: 246 FSSISGLNLNVQKCSLFFGNVPPNEAEQIVESTGISLGSLPISYLGLPLITSRLRSQQCA 67
F++ GL + ++K +L+ V + + + +G LP+ YLGLPL+T RL + +
Sbjct: 449 FAAKLGLKICMEKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYS 508
Query: 66 PLISRLCHRIGCWTSHFLSFAG 1
PLI ++ RIG WTS +LSFAG
Sbjct: 509 PLIDQIRRRIGMWTSRYLSFAG 530