BLASTX nr result

ID: Bupleurum21_contig00019210 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00019210
         (614 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277625.2| PREDICTED: probable ATP-dependent RNA helica...   289   3e-76
emb|CBI15516.3| unnamed protein product [Vitis vinifera]              289   3e-76
emb|CAN67889.1| hypothetical protein VITISV_013607 [Vitis vinifera]   289   3e-76
ref|XP_004160445.1| PREDICTED: probable ATP-dependent RNA helica...   283   2e-74
ref|XP_004137549.1| PREDICTED: probable ATP-dependent RNA helica...   283   2e-74

>ref|XP_002277625.2| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Vitis
            vinifera]
          Length = 1178

 Score =  289 bits (739), Expect = 3e-76
 Identities = 139/194 (71%), Positives = 161/194 (82%), Gaps = 1/194 (0%)
 Frame = +2

Query: 2    QAGYDYCWKNFLSAQTLRAIDSLRKQFFYLLKDTGLIDD-IDGCNTWSHDEHLIRAITCA 178
            Q+GY+YCW+NFLSAQTL+AIDSLR+QFFYLLKD GL+++  + CN WSHDEHLIRA+ CA
Sbjct: 846  QSGYEYCWRNFLSAQTLKAIDSLRRQFFYLLKDAGLVENNTEACNKWSHDEHLIRAVICA 905

Query: 179  GLYPGICSVVNKEKSISLKTMEDGPVLLHSNSVNAQKARIPFPWLVFNEKLKINSVMLRD 358
            GL+PGICSVVNKEKSISLKTMEDG VLL+SNSVNA++ +IP+PWLVFNEK+K+NSV LRD
Sbjct: 906  GLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAREPKIPYPWLVFNEKVKVNSVFLRD 965

Query: 359  STAVSDSMVLLFGGNISRGGLDGHLKMLGGYLEFFMKPGLAXXXXXXXXXXXXXXXXXXX 538
            STAVSDSM+LLFGG ISRGG+DGHLKMLGGYLEFFMKP LA                   
Sbjct: 966  STAVSDSMLLLFGGRISRGGIDGHLKMLGGYLEFFMKPDLADTYLSLKKELEELIQQKLL 1025

Query: 539  NPKLDMENHNELLS 580
            NP LD+  +NELLS
Sbjct: 1026 NPTLDVHTNNELLS 1039


>emb|CBI15516.3| unnamed protein product [Vitis vinifera]
          Length = 1057

 Score =  289 bits (739), Expect = 3e-76
 Identities = 139/194 (71%), Positives = 161/194 (82%), Gaps = 1/194 (0%)
 Frame = +2

Query: 2    QAGYDYCWKNFLSAQTLRAIDSLRKQFFYLLKDTGLIDD-IDGCNTWSHDEHLIRAITCA 178
            Q+GY+YCW+NFLSAQTL+AIDSLR+QFFYLLKD GL+++  + CN WSHDEHLIRA+ CA
Sbjct: 725  QSGYEYCWRNFLSAQTLKAIDSLRRQFFYLLKDAGLVENNTEACNKWSHDEHLIRAVICA 784

Query: 179  GLYPGICSVVNKEKSISLKTMEDGPVLLHSNSVNAQKARIPFPWLVFNEKLKINSVMLRD 358
            GL+PGICSVVNKEKSISLKTMEDG VLL+SNSVNA++ +IP+PWLVFNEK+K+NSV LRD
Sbjct: 785  GLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAREPKIPYPWLVFNEKVKVNSVFLRD 844

Query: 359  STAVSDSMVLLFGGNISRGGLDGHLKMLGGYLEFFMKPGLAXXXXXXXXXXXXXXXXXXX 538
            STAVSDSM+LLFGG ISRGG+DGHLKMLGGYLEFFMKP LA                   
Sbjct: 845  STAVSDSMLLLFGGRISRGGIDGHLKMLGGYLEFFMKPDLADTYLSLKKELEELIQQKLL 904

Query: 539  NPKLDMENHNELLS 580
            NP LD+  +NELLS
Sbjct: 905  NPTLDVHTNNELLS 918


>emb|CAN67889.1| hypothetical protein VITISV_013607 [Vitis vinifera]
          Length = 558

 Score =  289 bits (739), Expect = 3e-76
 Identities = 139/194 (71%), Positives = 161/194 (82%), Gaps = 1/194 (0%)
 Frame = +2

Query: 2   QAGYDYCWKNFLSAQTLRAIDSLRKQFFYLLKDTGLIDD-IDGCNTWSHDEHLIRAITCA 178
           Q+GY+YCW+NFLSAQTL+AIDSLR+QFFYLLKD GL+++  + CN WSHDEHLIRA+ CA
Sbjct: 226 QSGYEYCWRNFLSAQTLKAIDSLRRQFFYLLKDAGLVENNTEACNKWSHDEHLIRAVICA 285

Query: 179 GLYPGICSVVNKEKSISLKTMEDGPVLLHSNSVNAQKARIPFPWLVFNEKLKINSVMLRD 358
           GL+PGICSVVNKEKSISLKTMEDG VLL+SNSVNA++ +IP+PWLVFNEK+K+NSV LRD
Sbjct: 286 GLFPGICSVVNKEKSISLKTMEDGQVLLYSNSVNAREPKIPYPWLVFNEKVKVNSVFLRD 345

Query: 359 STAVSDSMVLLFGGNISRGGLDGHLKMLGGYLEFFMKPGLAXXXXXXXXXXXXXXXXXXX 538
           STAVSDSM+LLFGG ISRGG+DGHLKMLGGYLEFFMKP LA                   
Sbjct: 346 STAVSDSMLLLFGGRISRGGIDGHLKMLGGYLEFFMKPDLADTYLSLKKELEELIQQKLL 405

Query: 539 NPKLDMENHNELLS 580
           NP LD+  +NELLS
Sbjct: 406 NPTLDVHTNNELLS 419


>ref|XP_004160445.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
            sativus]
          Length = 1231

 Score =  283 bits (723), Expect = 2e-74
 Identities = 137/194 (70%), Positives = 158/194 (81%), Gaps = 1/194 (0%)
 Frame = +2

Query: 2    QAGYDYCWKNFLSAQTLRAIDSLRKQFFYLLKDTGLID-DIDGCNTWSHDEHLIRAITCA 178
            Q+GY+YCW+NFLS QTLRAIDSLRKQFF+LLKD GL+D D + CN  +HDEHLIRA+ CA
Sbjct: 877  QSGYEYCWRNFLSMQTLRAIDSLRKQFFFLLKDAGLVDYDSEKCNISNHDEHLIRAVICA 936

Query: 179  GLYPGICSVVNKEKSISLKTMEDGPVLLHSNSVNAQKARIPFPWLVFNEKLKINSVMLRD 358
            GL+PGICSVVNKEKS++LKTMEDG V+L+SNSVNA   +IP+PWLVFNEK+K+NSV LRD
Sbjct: 937  GLFPGICSVVNKEKSVALKTMEDGQVMLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRD 996

Query: 359  STAVSDSMVLLFGGNISRGGLDGHLKMLGGYLEFFMKPGLAXXXXXXXXXXXXXXXXXXX 538
            ST VSDS++LLFGGN+SRGGLDGHLKML GYLEFFMKP LA                   
Sbjct: 997  STGVSDSVLLLFGGNVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKRELDELVHQKLL 1056

Query: 539  NPKLDMENHNELLS 580
            NPKLDME HNELL+
Sbjct: 1057 NPKLDMEPHNELLT 1070


>ref|XP_004137549.1| PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Cucumis
            sativus]
          Length = 1168

 Score =  283 bits (723), Expect = 2e-74
 Identities = 137/194 (70%), Positives = 158/194 (81%), Gaps = 1/194 (0%)
 Frame = +2

Query: 2    QAGYDYCWKNFLSAQTLRAIDSLRKQFFYLLKDTGLID-DIDGCNTWSHDEHLIRAITCA 178
            Q+GY+YCW+NFLS QTLRAIDSLRKQFF+LLKD GL+D D + CN  +HDEHLIRA+ CA
Sbjct: 830  QSGYEYCWRNFLSMQTLRAIDSLRKQFFFLLKDAGLVDYDSEKCNISNHDEHLIRAVICA 889

Query: 179  GLYPGICSVVNKEKSISLKTMEDGPVLLHSNSVNAQKARIPFPWLVFNEKLKINSVMLRD 358
            GL+PGICSVVNKEKS++LKTMEDG V+L+SNSVNA   +IP+PWLVFNEK+K+NSV LRD
Sbjct: 890  GLFPGICSVVNKEKSVALKTMEDGQVMLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRD 949

Query: 359  STAVSDSMVLLFGGNISRGGLDGHLKMLGGYLEFFMKPGLAXXXXXXXXXXXXXXXXXXX 538
            ST VSDS++LLFGGN+SRGGLDGHLKML GYLEFFMKP LA                   
Sbjct: 950  STGVSDSVLLLFGGNVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKRELDELVHQKLL 1009

Query: 539  NPKLDMENHNELLS 580
            NPKLDME HNELL+
Sbjct: 1010 NPKLDMEPHNELLT 1023


Top