BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00019054
         (737 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|2...   343   3e-92
ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containi...   337   1e-90
ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   321   1e-85
ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containi...   319   4e-85
ref|XP_002891080.1| pentatricopeptide repeat-containing protein ...   295   7e-78

>ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|222856179|gb|EEE93726.1|
           predicted protein [Populus trichocarpa]
          Length = 578

 Score =  343 bits (879), Expect = 3e-92
 Identities = 162/245 (66%), Positives = 198/245 (80%)
 Frame = -3

Query: 735 VNDLLLQTTLVDVYAKSGDLDSARLVFDQMSLRDVACWNVLIAGLAQGSQASEALEVFKE 556
           + D LL TTL+DVYAK G++DSA  VFD+M  RD+A WN LI+G AQGS+ +EAL +FK 
Sbjct: 137 IADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKR 196

Query: 555 MGLRGMRPNEVTVLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGF 376
           M + G +PNE++VLGALSAC+QLGD +EGE +  YI+ E+ D N Q+CN VIDMYAKCGF
Sbjct: 197 MEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGF 256

Query: 375 VDKAFWVFRTMNCRKCIITWNTMIMALAMQGDGIRALELFDEMDKSGMVADSVTYLSALC 196
           VDKA+ VF +M+CRK I+TWNTMIMA AM G+G +ALELF++MD+SG+  D V+YL+ LC
Sbjct: 257 VDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLC 316

Query: 195 ACNHAGMVEDGVRLFESMAKNGVSRNMKHYGSVVDLLGRAGRLKEAYDIVNGMPMVPDVV 16
           ACNH G+VE+G RLF SM   GV  N+KHYGSVVDLLGRAGRL EAYDIVN MP VPD+V
Sbjct: 317 ACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIV 376

Query: 15  LWQTL 1
           LWQTL
Sbjct: 377 LWQTL 381



 Score = 88.2 bits (217), Expect = 2e-15
 Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
 Frame = -3

Query: 708 LVDVYAKSGDLDSARLVFDQMSLR-DVACWNVLIAGLAQGSQASEALEVFKEMGLRGMRP 532
           ++D+YAK G +D A LVF+ MS R D+  WN +I   A   +  +ALE+F++M   G+ P
Sbjct: 247 VIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSP 306

Query: 531 NEVTVLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGFVDKAFWVF 352
           ++V+ L  L AC+  G ++EG  LF+ +    +  NV+   +V+D+  + G + +A+ + 
Sbjct: 307 DDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIV 366

Query: 351 RTMNCRKCIITWNTMIMA 298
            +M     I+ W T++ A
Sbjct: 367 NSMPTVPDIVLWQTLLGA 384


>ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  337 bits (865), Expect = 1e-90
 Identities = 164/243 (67%), Positives = 196/243 (80%)
 Frame = -3

Query: 729 DLLLQTTLVDVYAKSGDLDSARLVFDQMSLRDVACWNVLIAGLAQGSQASEALEVFKEMG 550
           D+LL TTL+D YAK GDLDSA+ VFD++ LRDVA WN LIAGLAQGS++SEAL +F  M 
Sbjct: 134 DILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMR 193

Query: 549 LRGMRPNEVTVLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGFVD 370
             G + NE++VLGAL+ACSQLG ++ GE +   +R   +D NVQ+CNAVIDMYAKCGF D
Sbjct: 194 AEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFAD 253

Query: 369 KAFWVFRTMNCRKCIITWNTMIMALAMQGDGIRALELFDEMDKSGMVADSVTYLSALCAC 190
           K F VF TM C K ++TWNTMIMA AM GDG RALELF+EM K+ +  DSVTYL+ LCAC
Sbjct: 254 KGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCAC 313

Query: 189 NHAGMVEDGVRLFESMAKNGVSRNMKHYGSVVDLLGRAGRLKEAYDIVNGMPMVPDVVLW 10
           NHAG+VE+GVRLF+ M   GV+RN+KHYGSVVDLLGRAGRL EAY I+N MP+VPDVVLW
Sbjct: 314 NHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLW 373

Query: 9   QTL 1
           Q+L
Sbjct: 374 QSL 376



 Score = 82.4 bits (202), Expect = 9e-14
 Identities = 53/208 (25%), Positives = 96/208 (46%)
 Frame = -3

Query: 624 WNVLIAGLAQGSQASEALEVFKEMGLRGMRPNEVTVLGALSACSQLGDIQEGEILFDYIR 445
           +N L+ GLA+G   + AL     +    + P+ +T   +L A ++   + E   +  ++ 
Sbjct: 72  FNALLRGLARGPHPTHALTFLSTI----LHPDALTFSFSLIASARALALSETSQIHSHLL 127

Query: 444 GEKMDCNVQICNAVIDMYAKCGFVDKAFWVFRTMNCRKCIITWNTMIMALAMQGDGIRAL 265
                 ++ +   +ID YAKCG +D A  VF  +  R  +  WN +I  LA       AL
Sbjct: 128 RRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRD-VAAWNALIAGLAQGSKSSEAL 186

Query: 264 ELFDEMDKSGMVADSVTYLSALCACNHAGMVEDGVRLFESMAKNGVSRNMKHYGSVVDLL 85
            LF+ M   G   + ++ L AL AC+  G +  G  +   + K  +  N++   +V+D+ 
Sbjct: 187 ALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMY 246

Query: 84  GRAGRLKEAYDIVNGMPMVPDVVLWQTL 1
            + G   + + + + M     VV W T+
Sbjct: 247 AKCGFADKGFRVFSTMTCGKSVVTWNTM 274



 Score = 82.4 bits (202), Expect = 9e-14
 Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 1/144 (0%)
 Frame = -3

Query: 708 LVDVYAKSGDLDSARLVFDQMSL-RDVACWNVLIAGLAQGSQASEALEVFKEMGLRGMRP 532
           ++D+YAK G  D    VF  M+  + V  WN +I   A       ALE+F+EMG   +  
Sbjct: 242 VIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEM 301

Query: 531 NEVTVLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGFVDKAFWVF 352
           + VT L  L AC+  G ++EG  LFD + G  ++ NV+   +V+D+  + G + +A+ + 
Sbjct: 302 DSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGEAYRII 361

Query: 351 RTMNCRKCIITWNTMIMALAMQGD 280
            +M     ++ W +++ A    G+
Sbjct: 362 NSMPIVPDVVLWQSLLGACKTYGN 385


>ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  321 bits (822), Expect = 1e-85
 Identities = 155/244 (63%), Positives = 195/244 (79%), Gaps = 1/244 (0%)
 Frame = -3

Query: 729 DLLLQTTLVDVYAKSGDLDSARLVFDQMSLRDVACWNVLIAGLAQGSQASEALEVFKEMG 550
           D+LLQTTL+D YAK GDLD A+ +FD+M   D+A WN LIAG AQGS+ ++A+  FK M 
Sbjct: 137 DVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMK 196

Query: 549 LRG-MRPNEVTVLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGFV 373
           + G +RPN VTV GAL ACSQLG ++EGE +  YI  EK+D NVQ+CN VIDMYAKCG +
Sbjct: 197 VDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSM 256

Query: 372 DKAFWVFRTMNCRKCIITWNTMIMALAMQGDGIRALELFDEMDKSGMVADSVTYLSALCA 193
           DKA+WVF  M C K +ITWNTMIMA AM GDG +AL+LF+++ +SGM  D+V+YL+ LCA
Sbjct: 257 DKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCA 316

Query: 192 CNHAGMVEDGVRLFESMAKNGVSRNMKHYGSVVDLLGRAGRLKEAYDIVNGMPMVPDVVL 13
           CNHAG+VEDG++LF SM + G+  N+KHYGS+VDLLGRAGRLKEAYDIV+ +P  P++VL
Sbjct: 317 CNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVL 375

Query: 12  WQTL 1
           WQTL
Sbjct: 376 WQTL 379



 Score = 75.5 bits (184), Expect = 1e-11
 Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 5/244 (2%)
 Frame = -3

Query: 717 QTTLVDVYAKS--GDLDSARLVFDQMSLRDVACWNVLIAGLAQGSQASEALEVFKEMGLR 544
           +T L+++ A S  GDL  A  +F  +       WN +I G A  S  + A+  ++ M   
Sbjct: 36  RTKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAAS 95

Query: 543 G--MRPNEVTVLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGFVD 370
               R + +T   AL AC++     E   L   +     + +V +   ++D YAK G +D
Sbjct: 96  NGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLD 155

Query: 369 KAFWVFRTMNCRKCIITWNTMIMALAMQGDGIRALELFDEMDKSG-MVADSVTYLSALCA 193
            A  +F  M  +  I +WN +I   A       A+  F  M   G +  ++VT   AL A
Sbjct: 156 LAQKLFDEMP-QPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLA 214

Query: 192 CNHAGMVEDGVRLFESMAKNGVSRNMKHYGSVVDLLGRAGRLKEAYDIVNGMPMVPDVVL 13
           C+  G +++G  + + + +  +  N++    V+D+  + G + +AY +   M     ++ 
Sbjct: 215 CSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLIT 274

Query: 12  WQTL 1
           W T+
Sbjct: 275 WNTM 278


>ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  319 bits (817), Expect = 4e-85
 Identities = 154/244 (63%), Positives = 195/244 (79%), Gaps = 1/244 (0%)
 Frame = -3

Query: 729 DLLLQTTLVDVYAKSGDLDSARLVFDQMSLRDVACWNVLIAGLAQGSQASEALEVFKEMG 550
           D+LLQTTL+D YAK GDLD A+ +FD+M   D+A WN LIAG AQGS+ ++A+  FK M 
Sbjct: 137 DVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMK 196

Query: 549 LRG-MRPNEVTVLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGFV 373
           + G +RPN VTV GAL ACSQLG ++EGE +  YI  EK++ NVQ+CN VIDMYAKCG +
Sbjct: 197 VDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSM 256

Query: 372 DKAFWVFRTMNCRKCIITWNTMIMALAMQGDGIRALELFDEMDKSGMVADSVTYLSALCA 193
           DKA+WVF  M C K +ITWNTMIMA AM GDG +AL+LF+++ +SGM  D+V+YL+ LCA
Sbjct: 257 DKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCA 316

Query: 192 CNHAGMVEDGVRLFESMAKNGVSRNMKHYGSVVDLLGRAGRLKEAYDIVNGMPMVPDVVL 13
           CNHAG+VEDG++LF SM + G+  N+KHYGS+VDLLGRAGRLKEAYDIV+ +P  P++VL
Sbjct: 317 CNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLPF-PNMVL 375

Query: 12  WQTL 1
           WQTL
Sbjct: 376 WQTL 379



 Score = 75.9 bits (185), Expect = 8e-12
 Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 5/244 (2%)
 Frame = -3

Query: 717 QTTLVDVYAKS--GDLDSARLVFDQMSLRDVACWNVLIAGLAQGSQASEALEVFKEMGLR 544
           +T L+++ A S  GDL  A  +F  +       WN +I G A  S  + A+  ++ M   
Sbjct: 36  RTKLLELCAISSFGDLSYALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAAS 95

Query: 543 G--MRPNEVTVLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGFVD 370
               R + +T   AL AC++     E   L   +     + +V +   ++D YAK G +D
Sbjct: 96  NGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLD 155

Query: 369 KAFWVFRTMNCRKCIITWNTMIMALAMQGDGIRALELFDEMDKSG-MVADSVTYLSALCA 193
            A  +F  M  +  I +WN +I   A       A+  F  M   G +  ++VT   AL A
Sbjct: 156 LAQKLFDEMP-QPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLA 214

Query: 192 CNHAGMVEDGVRLFESMAKNGVSRNMKHYGSVVDLLGRAGRLKEAYDIVNGMPMVPDVVL 13
           C+  G +++G  + + + +  ++ N++    V+D+  + G + +AY +   M     ++ 
Sbjct: 215 CSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLIT 274

Query: 12  WQTL 1
           W T+
Sbjct: 275 WNTM 278


>ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336922|gb|EFH67339.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 562

 Score =  295 bits (755), Expect = 7e-78
 Identities = 145/244 (59%), Positives = 188/244 (77%), Gaps = 1/244 (0%)
 Frame = -3

Query: 729 DLLLQTTLVDVYAKSGDLDSARLVFDQMSLRDVACWNVLIAGLAQGSQASEALEVFKEMG 550
           D LL TTL+D Y+K+GDL SA  +FD+MS+RDVA WN LIAGL  G++ASEALE++K M 
Sbjct: 142 DALLCTTLLDAYSKNGDLISALKLFDEMSVRDVASWNALIAGLVAGNRASEALELYKRME 201

Query: 549 LRGMRPNEVTVLGALSACSQLGDIQEGE-ILFDYIRGEKMDCNVQICNAVIDMYAKCGFV 373
           + G+R +EVTV+ AL ACS LGD++EGE IL  YI+ EK+D NV + NAVIDMY+KCGFV
Sbjct: 202 MEGIRRSEVTVVAALGACSHLGDVKEGEKILHGYIKDEKLDHNVIVSNAVIDMYSKCGFV 261

Query: 372 DKAFWVFRTMNCRKCIITWNTMIMALAMQGDGIRALELFDEMDKSGMVADSVTYLSALCA 193
           DKAF VF     +K ++TWNTMI   ++ G+  RALE+F++++ +G+  D V+YL+AL A
Sbjct: 262 DKAFQVFEQFTGKKSVVTWNTMITGFSVHGEAHRALEIFEKLEHNGIKPDDVSYLAALTA 321

Query: 192 CNHAGMVEDGVRLFESMAKNGVSRNMKHYGSVVDLLGRAGRLKEAYDIVNGMPMVPDVVL 13
           C H G+VE G+ +F +MA NGV  NMKHYG VVDLL RAGRL+EA+DI+  M MVPD VL
Sbjct: 322 CRHTGLVEYGISIFNNMACNGVEPNMKHYGCVVDLLSRAGRLREAHDIICSMSMVPDPVL 381

Query: 12  WQTL 1
           WQ+L
Sbjct: 382 WQSL 385



 Score = 83.2 bits (204), Expect = 5e-14
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 6/234 (2%)
 Frame = -3

Query: 684 GDLDSARLVFDQMSLRDVACWNVLIAGLAQGSQASEALEVFKEMGLRG-----MRPNEVT 520
           GDL  A  +F  +       WN +I G A  S  S A   ++ M  R       R + +T
Sbjct: 51  GDLSFAVKIFRHIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQRSSSSALCRVDALT 110

Query: 519 VLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGFVDKAFWVFRTMN 340
               L AC++         +   I       +  +C  ++D Y+K G +  A  +F  M+
Sbjct: 111 CSFTLKACARALCSSAMVQIHCQISRRGFSADALLCTTLLDAYSKNGDLISALKLFDEMS 170

Query: 339 CRKCIITWNTMIMALAMQGDGIRALELFDEMDKSGMVADSVTYLSALCACNHAGMVEDGV 160
            R  + +WN +I  L        ALEL+  M+  G+    VT ++AL AC+H G V++G 
Sbjct: 171 VRD-VASWNALIAGLVAGNRASEALELYKRMEMEGIRRSEVTVVAALGACSHLGDVKEGE 229

Query: 159 RLFESMAKN-GVSRNMKHYGSVVDLLGRAGRLKEAYDIVNGMPMVPDVVLWQTL 1
           ++     K+  +  N+    +V+D+  + G + +A+ +         VV W T+
Sbjct: 230 KILHGYIKDEKLDHNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGKKSVVTWNTM 283



 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 38/146 (26%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
 Frame = -3

Query: 732 NDLLLQTTLVDVYAKSGDLDSARLVFDQMS-LRDVACWNVLIAGLAQGSQASEALEVFKE 556
           +++++   ++D+Y+K G +D A  VF+Q +  + V  WN +I G +   +A  ALE+F++
Sbjct: 243 HNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGKKSVVTWNTMITGFSVHGEAHRALEIFEK 302

Query: 555 MGLRGMRPNEVTVLGALSACSQLGDIQEGEILFDYIRGEKMDCNVQICNAVIDMYAKCGF 376
           +   G++P++V+ L AL+AC   G ++ G  +F+ +    ++ N++    V+D+ ++ G 
Sbjct: 303 LEHNGIKPDDVSYLAALTACRHTGLVEYGISIFNNMACNGVEPNMKHYGCVVDLLSRAGR 362

Query: 375 VDKAFWVFRTMNCRKCIITWNTMIMA 298
           + +A  +  +M+     + W +++ A
Sbjct: 363 LREAHDIICSMSMVPDPVLWQSLLGA 388