BLASTX nr result

ID: Bupleurum21_contig00018807 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00018807
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFL91220.1| cell wall protein, partial [Helianthus annuus] gi...    77   1e-12
gb|AFL91222.1| cell wall protein, partial [Helianthus annuus]          77   1e-12
gb|AFL91221.1| cell wall protein, partial [Helianthus annuus]          77   1e-12
gb|AFL91218.1| cell wall protein, partial [Helianthus annuus] gi...    77   1e-12
ref|XP_002886312.1| hypothetical protein ARALYDRAFT_900466 [Arab...    76   2e-12

>gb|AFL91220.1| cell wall protein, partial [Helianthus annuus]
           gi|390430815|gb|AFL91225.1| cell wall protein, partial
           [Helianthus annuus]
          Length = 87

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
 Frame = -3

Query: 285 LIPGVGRVMVPPKKKCFHKGFNPFTYNPVTGTNTGHGVSVPTLPAPTTGG-SVPRYIPGG 109
           LIPGVGR + P      ++GFNP TYNP+TG+N G     P +  P+ GG     Y+PGG
Sbjct: 8   LIPGVGRGITPKP----NEGFNPVTYNPITGSNNGF----PGITVPSVGGLGGGNYLPGG 59

Query: 108 DDTPVPNPGFEVP-TGALPSPP 46
           DDT +PNPGFEVP  G + + P
Sbjct: 60  DDTLIPNPGFEVPIPGGIDNTP 81


>gb|AFL91222.1| cell wall protein, partial [Helianthus annuus]
          Length = 91

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = -3

Query: 285 LIPGVGRVMVPPKKKCFHKGFNPFTYNPVTGTNTGHGVSVPTLPAPTTGG-SVPRYIPGG 109
           LIPGVGR + P      ++GFNP TYNP+TG+N G     P +  P+ GG     Y+PGG
Sbjct: 11  LIPGVGRGITPKP----NEGFNPVTYNPITGSNNGF----PGITVPSVGGLGGGNYLPGG 62

Query: 108 DDTPVPNPGFEVP 70
           DDT +PNPGFEVP
Sbjct: 63  DDTLIPNPGFEVP 75


>gb|AFL91221.1| cell wall protein, partial [Helianthus annuus]
          Length = 88

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = -3

Query: 285 LIPGVGRVMVPPKKKCFHKGFNPFTYNPVTGTNTGHGVSVPTLPAPTTGG-SVPRYIPGG 109
           LIPGVGR + P      ++GFNP TYNP+TG+N G     P +  P+ GG     Y+PGG
Sbjct: 8   LIPGVGRGITPKP----NEGFNPVTYNPITGSNNGF----PGITVPSVGGLGGGNYLPGG 59

Query: 108 DDTPVPNPGFEVP 70
           DDT +PNPGFEVP
Sbjct: 60  DDTLIPNPGFEVP 72


>gb|AFL91218.1| cell wall protein, partial [Helianthus annuus]
           gi|390430813|gb|AFL91224.1| cell wall protein, partial
           [Helianthus annuus]
          Length = 91

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = -3

Query: 285 LIPGVGRVMVPPKKKCFHKGFNPFTYNPVTGTNTGHGVSVPTLPAPTTGG-SVPRYIPGG 109
           LIPGVGR + P      ++GFNP TYNP+TG+N G     P +  P+ GG     Y+PGG
Sbjct: 11  LIPGVGRGITPKP----NEGFNPVTYNPITGSNNGF----PGITVPSVGGLGGGNYLPGG 62

Query: 108 DDTPVPNPGFEVP 70
           DDT +PNPGFEVP
Sbjct: 63  DDTLIPNPGFEVP 75


>ref|XP_002886312.1| hypothetical protein ARALYDRAFT_900466 [Arabidopsis lyrata subsp.
           lyrata] gi|297332152|gb|EFH62571.1| hypothetical protein
           ARALYDRAFT_900466 [Arabidopsis lyrata subsp. lyrata]
          Length = 140

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 48/105 (45%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
 Frame = -3

Query: 339 PKDVDKKQPE---TYTQEGSVLIPGVGRVMVPPKKKCFHKGFNPFTYNPVTGTNTGHGVS 169
           PK  D K P+   T   + ++LIPGVGR ++PPK K   K F P  YNPVTG        
Sbjct: 35  PKTTDVKHPDFLVTIEPKPTILIPGVGRFLLPPKCK---KPFYP--YNPVTG-------- 81

Query: 168 VPTLPAPTTGGSVPRY-----------IPGGDDTPVPNPGFEVPT 67
                AP TGG +P Y           +PGGDDT VPNPGFE PT
Sbjct: 82  -----APLTGGGIPSYNGGQGAGPRTQLPGGDDTLVPNPGFEAPT 121


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