BLASTX nr result
ID: Bupleurum21_contig00017945
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00017945
(757 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI17752.3| unnamed protein product [Vitis vinifera] 375 e-102
ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|2... 361 1e-97
ref|XP_003598903.1| Pentatricopeptide repeat-containing protein ... 352 5e-95
ref|XP_004140286.1| PREDICTED: pentatricopeptide repeat-containi... 342 5e-92
ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containi... 338 6e-91
>emb|CBI17752.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 375 bits (962), Expect = e-102
Identities = 178/252 (70%), Positives = 213/252 (84%)
Frame = +2
Query: 2 KTGHVDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVF 181
KTGH+DLA+SVY+DF+++GLVEES+TYMIL+KG CK GR+DEV ELL+ MR LCKPDVF
Sbjct: 234 KTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLELLDRMRGNLCKPDVF 293
Query: 182 AYTAMVRVLVSEGNLDGCLRIWEEMLNDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEM 361
AYTAMV+VLV+EGNLDGCLR+WEEM DKV PD MAY+TL+ LC NRV +G+ELFKEM
Sbjct: 294 AYTAMVKVLVAEGNLDGCLRVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEM 353
Query: 362 KEKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIKGLCCAKHI 541
K+KKYLIDR IYGSLIE FV ++G ACDLLKDLMDSGYRADLAIYNSLI+G+C K +
Sbjct: 354 KQKKYLIDRAIYGSLIEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQV 413
Query: 542 EKAYKLFQVTVQEDLQPDFVTVNPMLVYYAESKRMGDFYKMLVELQKLGFSVIDDLRRFF 721
+KAYKLFQVTV E L+P+F+TV PMLV YAE KRM DF +L ++QKLGF VIDDL +FF
Sbjct: 414 DKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKLGFPVIDDLSKFF 473
Query: 722 SYMVKKENRVMI 757
S M++K R+ +
Sbjct: 474 SVMIEKGERLKL 485
Score = 62.8 bits (151), Expect = 8e-08
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 3/174 (1%)
Frame = +2
Query: 2 KTGHVDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVF 181
+TG V A+S++DD +D +S TY I F + G + E N + E P V
Sbjct: 513 RTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPSVA 572
Query: 182 AYTAMVRVLVSEGNLDGCLRIWEEML-NDKVHPDAMAYSTLILGLCKWNRVLKGYELFKE 358
AY ++V+ L +D + + + L N P Y+ IL CK K ++ E
Sbjct: 573 AYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNAEKVIDVLNE 632
Query: 359 MKEKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGY--RADLAIYNSLI 514
M ++ D V Y +LI G + A + ++ + A++ +Y+ ++
Sbjct: 633 MMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNMRERKLLTEANVIVYDEIL 686
Score = 61.6 bits (148), Expect = 2e-07
Identities = 49/223 (21%), Positives = 99/223 (44%), Gaps = 10/223 (4%)
Frame = +2
Query: 2 KTGHVDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVF 181
K + LA+ V++ + +G SI Y IL++ + G + + L + +++ KPD
Sbjct: 479 KGERLKLALEVFEHLKAKGYCSISI-YNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSS 537
Query: 182 AYTAMVRVLVSEGNLDGCLRIWEEMLNDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEM 361
Y+ + V G++ + +++ P AY +L+ GLCK + L ++
Sbjct: 538 TYSNAIICFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCKSEEIDAAIMLVRDC 597
Query: 362 --------KEKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIK 517
E KY + +++ A G D+L ++M G D Y++LI
Sbjct: 598 LANVTSGPMEFKYTL------TILHA-CKSGNAEKVIDVLNEMMQEGCTPDEVTYSALIS 650
Query: 518 GLCCAKHIEKAYKLFQVTVQEDL--QPDFVTVNPMLVYYAESK 640
G+C +E+A K+F + L + + + + +L+ + + K
Sbjct: 651 GMCKHGTLEEARKVFSNMRERKLLTEANVIVYDEILIEHMKKK 693
Score = 61.2 bits (147), Expect = 2e-07
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 1/183 (0%)
Frame = +2
Query: 14 VDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVFAYTA 193
VD A ++ E L +T ++ + + R+D+ LL M +KL P + +
Sbjct: 413 VDKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQM-QKLGFPVIDDLSK 471
Query: 194 MVRVLVSEGN-LDGCLRIWEEMLNDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEMKEK 370
V++ +G L L ++E L K + Y+ L+ + + V K LF ++K+
Sbjct: 472 FFSVMIEKGERLKLALEVFEH-LKAKGYCSISIYNILMEAIHRTGEVKKALSLFDDIKDS 530
Query: 371 KYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIKGLCCAKHIEKA 550
+ D Y + I FV G + AC +++ +A Y SL+KGLC ++ I+ A
Sbjct: 531 NFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCKSEEIDAA 590
Query: 551 YKL 559
L
Sbjct: 591 IML 593
>ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|222842206|gb|EEE79753.1|
predicted protein [Populus trichocarpa]
Length = 728
Score = 361 bits (926), Expect = 1e-97
Identities = 174/252 (69%), Positives = 206/252 (81%)
Frame = +2
Query: 2 KTGHVDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVF 181
KTGH+DLA+SVY+DFR +GLVEES+TYMILIKG CK GR++E+ E+L MRE LCKPDVF
Sbjct: 242 KTGHLDLALSVYEDFRRDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMRENLCKPDVF 301
Query: 182 AYTAMVRVLVSEGNLDGCLRIWEEMLNDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEM 361
AYTAMVR L EGNLD CLR+WEEM D V PD MAY TL+ LCK RV KGYE+FKEM
Sbjct: 302 AYTAMVRALAGEGNLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFKEM 361
Query: 362 KEKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIKGLCCAKHI 541
K ++ LIDR IYG L+EAFV +GKIGLACDLLKDL+DSGYRADL IYNSLI+G C K +
Sbjct: 362 KGRRILIDRGIYGILVEAFVADGKIGLACDLLKDLVDSGYRADLRIYNSLIEGFCNVKRV 421
Query: 542 EKAYKLFQVTVQEDLQPDFVTVNPMLVYYAESKRMGDFYKMLVELQKLGFSVIDDLRRFF 721
+KA+KLFQVTVQE L+ DF TVNP+L+ YAE K+M DF K+L +++KLGFSV DDL +FF
Sbjct: 422 DKAHKLFQVTVQEGLERDFKTVNPLLMSYAEMKKMDDFCKLLKQMEKLGFSVFDDLSKFF 481
Query: 722 SYMVKKENRVMI 757
SY+V K R M+
Sbjct: 482 SYVVGKPERTMM 493
Score = 74.7 bits (182), Expect = 2e-11
Identities = 43/162 (26%), Positives = 79/162 (48%)
Frame = +2
Query: 80 YMILIKGFCKEGRLDEVFELLNHMREKLCKPDVFAYTAMVRVLVSEGNLDGCLRIWEEML 259
+ ILI+ R V+ + M + KP VF Y ++ L+ G+LD L ++E+
Sbjct: 198 FEILIRMHSDANRGLRVYYVYQKMVKFGVKPRVFLYNRIMDSLIKTGHLDLALSVYEDFR 257
Query: 260 NDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEMKEKKYLIDRVIYGSLIEAFVTEGKIG 439
D + +++ Y LI GLCK R+ + E+ M+E D Y +++ A EG +
Sbjct: 258 RDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMRENLCKPDVFAYTAMVRALAGEGNLD 317
Query: 440 LACDLLKDLMDSGYRADLAIYNSLIKGLCCAKHIEKAYKLFQ 565
+ +++ G D+ Y +L+ LC ++K Y++F+
Sbjct: 318 ACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFK 359
>ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487951|gb|AES69154.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 767
Score = 352 bits (903), Expect = 5e-95
Identities = 165/251 (65%), Positives = 211/251 (84%)
Frame = +2
Query: 2 KTGHVDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVF 181
KTGH+DLA+SVY+DFR++GLVEES+T+MILIKG CK G++DE+ E+L MREKLCKPDVF
Sbjct: 237 KTGHLDLALSVYNDFREDGLVEESVTFMILIKGLCKGGKIDEMLEVLGRMREKLCKPDVF 296
Query: 182 AYTAMVRVLVSEGNLDGCLRIWEEMLNDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEM 361
AYTA+VR++V EGNLDGCLR+W+EM D+V PD MAY T+I GL K RV +GYELFKEM
Sbjct: 297 AYTALVRIMVKEGNLDGCLRVWKEMKRDRVDPDVMAYGTIIGGLAKGGRVSEGYELFKEM 356
Query: 362 KEKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIKGLCCAKHI 541
K K +LIDR IYGSL+E+FV K+GLA DLLKDL+ SGYRADL +YN+LI+GLC +
Sbjct: 357 KSKGHLIDRAIYGSLVESFVAGNKVGLAFDLLKDLVSSGYRADLGMYNNLIEGLCNLNKV 416
Query: 542 EKAYKLFQVTVQEDLQPDFVTVNPMLVYYAESKRMGDFYKMLVELQKLGFSVIDDLRRFF 721
EKAYKLFQVT+QE L+PDF++V P+L+ YAE+KRM +F+ +L +++KLGF VIDDL +FF
Sbjct: 417 EKAYKLFQVTIQEGLEPDFLSVKPLLLAYAEAKRMEEFFMLLEKMKKLGFPVIDDLSKFF 476
Query: 722 SYMVKKENRVM 754
S++V+K+ M
Sbjct: 477 SHLVEKKGPEM 487
Score = 59.3 bits (142), Expect = 9e-07
Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 3/215 (1%)
Frame = +2
Query: 5 TGHVDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVFA 184
+G V+ A+S++D+ + L +S TY I I G++ E E N + E P V A
Sbjct: 516 SGKVEKALSLFDEIKGSDLEPDSSTYNIAILCLVDHGQIKEACECHNKIIEMSSIPSVAA 575
Query: 185 YTAMVRVLVSEGNLDGCLRIWEEMLNDKVH-PDAMAYSTLILGLCKWNRVLKGYELFKEM 361
Y + + L + G +D + + + L + P Y I+ +CK N
Sbjct: 576 YNCLAKGLCNIGEIDEAMLLVRDCLGNVTSGPMEFKYCLTIIRMCKSN------------ 623
Query: 362 KEKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIKGLCCAKHI 541
V E I D+L ++M G D + +++I G+C I
Sbjct: 624 -------------------VAEKLI----DVLNEMMQEGCSLDNVVCSAIISGMCKYGTI 660
Query: 542 EKAYKLFQVTVQEDL--QPDFVTVNPMLVYYAESK 640
E+A K+F + + L + D + + +L+ + + K
Sbjct: 661 EEARKVFSILRERKLLTESDTIVYDELLIDHMKKK 695
>ref|XP_004140286.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Cucumis sativus]
gi|449531474|ref|XP_004172711.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g20740-like [Cucumis sativus]
Length = 726
Score = 342 bits (877), Expect = 5e-92
Identities = 162/252 (64%), Positives = 206/252 (81%)
Frame = +2
Query: 2 KTGHVDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVF 181
KT H+DLA++VY DF++ GLVEES+T+MILIKG CK GR+DE+ ELL MR LCKPDVF
Sbjct: 239 KTDHLDLALTVYRDFQENGLVEESVTFMILIKGLCKAGRVDEMLELLARMRANLCKPDVF 298
Query: 182 AYTAMVRVLVSEGNLDGCLRIWEEMLNDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEM 361
AYTAMV+VL S+ NL+GCLR+W+EM D+V PD MAY TLI+GLCK R KGYELF+EM
Sbjct: 299 AYTAMVKVLASKDNLEGCLRVWDEMRADRVEPDVMAYGTLIIGLCKVGRAQKGYELFQEM 358
Query: 362 KEKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIKGLCCAKHI 541
K K+ LIDR IYG+LIEAFV + K+GLACDL KDL+DSGYRADL IY+SLIKGLC +
Sbjct: 359 KGKRILIDRAIYGTLIEAFVQDEKVGLACDLFKDLVDSGYRADLGIYHSLIKGLCNVNQV 418
Query: 542 EKAYKLFQVTVQEDLQPDFVTVNPMLVYYAESKRMGDFYKMLVELQKLGFSVIDDLRRFF 721
+KAYKLFQ+T++EDL+PDF TV P+++ Y E+ RM DF+K++ LQKL FSV D L +F
Sbjct: 419 DKAYKLFQLTIREDLKPDFETVKPIMMMYVETGRMDDFWKLVSLLQKLEFSVDDVLSKFL 478
Query: 722 SYMVKKENRVMI 757
S+MV++E+++ +
Sbjct: 479 SFMVEEEDKISV 490
>ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20740-like [Glycine max]
Length = 733
Score = 338 bits (868), Expect = 6e-91
Identities = 159/251 (63%), Positives = 206/251 (82%)
Frame = +2
Query: 2 KTGHVDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVF 181
+TGH+DLA+SVYDD +++GLVEES+T+M+L+KG CK GR+DE+ E+L MRE+LCKPDVF
Sbjct: 247 RTGHLDLALSVYDDLKEDGLVEESVTFMVLVKGLCKCGRIDEMLEVLGRMRERLCKPDVF 306
Query: 182 AYTAMVRVLVSEGNLDGCLRIWEEMLNDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEM 361
AYTA+V++LV GNLD CLR+WEEM D+V PD AY+T+I+GL K RV +GYELF+EM
Sbjct: 307 AYTALVKILVPAGNLDACLRVWEEMKRDRVEPDVKAYATMIVGLAKGGRVQEGYELFREM 366
Query: 362 KEKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIKGLCCAKHI 541
K K L+DRVIYG+L+EAFV EGK+ LA DLLKDL+ SGYRADL IY LI+GLC +
Sbjct: 367 KGKGCLVDRVIYGALVEAFVAEGKVELAFDLLKDLVSSGYRADLGIYICLIEGLCNLNRV 426
Query: 542 EKAYKLFQVTVQEDLQPDFVTVNPMLVYYAESKRMGDFYKMLVELQKLGFSVIDDLRRFF 721
+KAYKLFQ+TV+E L+PDF+TV P+LV YAE+ RM +F K+L ++QKLGF VI DL +FF
Sbjct: 427 QKAYKLFQLTVREGLEPDFLTVKPLLVAYAEANRMEEFCKLLEQMQKLGFPVIADLSKFF 486
Query: 722 SYMVKKENRVM 754
S +V+K+ +M
Sbjct: 487 SVLVEKKGPIM 497
Score = 67.4 bits (163), Expect = 3e-09
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 3/174 (1%)
Frame = +2
Query: 2 KTGHVDLAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVF 181
K G V A+S++D+ + L +S TY I G + E N + E C P V
Sbjct: 525 KIGEVKKALSLFDEMKGLSLKPDSFTYCTAILCLVDLGEIKEACACHNRIIEMSCIPSVA 584
Query: 182 AYTAMVRVLVSEGNLDGCLRIWEEML-NDKVHPDAMAYSTLILGLCKWNRVLKGYELFKE 358
AY+++ + L G +D + + + L N P YS I+ CK N K ++ E
Sbjct: 585 AYSSLTKGLCQIGEIDEAMLLVRDCLGNVSDGPLEFKYSLTIIHACKSNVAEKVIDVLNE 644
Query: 359 MKEKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGY--RADLAIYNSLI 514
M E+ +D VIY S+I G I A + +L + + ++ +Y+ L+
Sbjct: 645 MIEQGCSLDNVIYCSIISGMCKHGTIEEARKVFSNLRERNFLTESNTIVYDELL 698
Score = 60.5 bits (145), Expect = 4e-07
Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 8/210 (3%)
Frame = +2
Query: 20 LAISVYDDFRDEGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVFAYTAMV 199
+A+ + +++G V I Y I + K G + + L + M+ KPD F Y +
Sbjct: 497 MALETFGQLKEKGHVSVEI-YNIFMDSLHKIGEVKKALSLFDEMKGLSLKPDSFTYCTAI 555
Query: 200 RVLVSEGNLDGCLRIWEEMLNDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEMK----- 364
LV G + ++ P AYS+L GLC+ + + L ++
Sbjct: 556 LCLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTKGLCQIGEIDEAMLLVRDCLGNVSD 615
Query: 365 ---EKKYLIDRVIYGSLIEAFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIKGLCCAK 535
E KY + + ++ V E I D+L ++++ G D IY S+I G+C
Sbjct: 616 GPLEFKYSLTII---HACKSNVAEKVI----DVLNEMIEQGCSLDNVIYCSIISGMCKHG 668
Query: 536 HIEKAYKLFQVTVQEDLQPDFVTVNPMLVY 625
IE+A K+F + +F+T + +VY
Sbjct: 669 TIEEARKVFSNLRER----NFLTESNTIVY 694
Score = 57.4 bits (137), Expect = 3e-06
Identities = 49/169 (28%), Positives = 75/169 (44%)
Frame = +2
Query: 53 EGLVEESITYMILIKGFCKEGRLDEVFELLNHMREKLCKPDVFAYTAMVRVLVSEGNLDG 232
EGL + +T L+ + + R++E +LL M +KL P + + VLV +
Sbjct: 439 EGLEPDFLTVKPLLVAYAEANRMEEFCKLLEQM-QKLGFPVIADLSKFFSVLVEKKGPIM 497
Query: 233 CLRIWEEMLNDKVHPDAMAYSTLILGLCKWNRVLKGYELFKEMKEKKYLIDRVIYGSLIE 412
L + + L +K H Y+ + L K V K LF EMK D Y + I
Sbjct: 498 ALETFGQ-LKEKGHVSVEIYNIFMDSLHKIGEVKKALSLFDEMKGLSLKPDSFTYCTAIL 556
Query: 413 AFVTEGKIGLACDLLKDLMDSGYRADLAIYNSLIKGLCCAKHIEKAYKL 559
V G+I AC +++ +A Y+SL KGLC I++A L
Sbjct: 557 CLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTKGLCQIGEIDEAMLL 605