BLASTX nr result
ID: Bupleurum21_contig00017932
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00017932
(406 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containi... 148 5e-34
emb|CBI18516.3| unnamed protein product [Vitis vinifera] 148 5e-34
emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera] 148 5e-34
ref|XP_002864412.1| pentatricopeptide repeat-containing protein ... 116 7e-31
ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containi... 107 1e-28
>ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
[Vitis vinifera]
Length = 2037
Score = 148 bits (373), Expect = 5e-34
Identities = 72/132 (54%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
Frame = -3
Query: 395 SLYIWGSTKRAVQRR-KLQRGNGIFSKIQHIPGAVDIFAYNTLVAETCRFGNLRVALMLM 219
S + +GS + + + L +++ +IPGAVD YNTL+AETC+ GNL A+ L
Sbjct: 1368 SFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALF 1427
Query: 218 DEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRVFEDLIKRGTFFPNQVMYTCLIDGLFK 39
D+MV+NNVLPDSYTY+S+L GLCRKG+ VTA+ +F + RGT FPN VMYTCL+DGL K
Sbjct: 1428 DKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSK 1487
Query: 38 AGQPKAAAYYIE 3
AG PKAA Y+ E
Sbjct: 1488 AGHPKAAFYFFE 1499
Score = 48.5 bits (114), Expect(2) = 2e-06
Identities = 25/88 (28%), Positives = 48/88 (54%)
Frame = -3
Query: 281 YNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRVFEDLI 102
Y TL+ C+ +A L++ M N+++ YT ++ GLC+ G + A+++ ++
Sbjct: 1162 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 1221
Query: 101 KRGTFFPNQVMYTCLIDGLFKAGQPKAA 18
K G P+ + Y+ LI+G + G K+A
Sbjct: 1222 KDGV-NPDVITYSSLINGFCRVGNIKSA 1248
Score = 27.7 bits (60), Expect(2) = 2e-06
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 400 PSLYTYGALLKGLCRGGNFKEAM 332
P+ TY AL+ G C G+F+EA+
Sbjct: 1122 PNCVTYNALIGGHCHVGDFEEAL 1144
Score = 49.7 bits (117), Expect(2) = 1e-05
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = -3
Query: 284 AYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRVFEDL 105
AY L+ C+ G L A+ L+ M ++ V PD TY+S++ G CR G + +A + +
Sbjct: 1196 AYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRM 1255
Query: 104 IKRGTFFPNQVMYTCLI 54
+ G N+++Y+ LI
Sbjct: 1256 YRSGLVL-NKIIYSTLI 1271
Score = 24.3 bits (51), Expect(2) = 1e-05
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 388 TYGALLKGLCRGGNFKEA 335
TYG LL GLC+ F+ A
Sbjct: 1161 TYGTLLNGLCKHEKFELA 1178
>emb|CBI18516.3| unnamed protein product [Vitis vinifera]
Length = 967
Score = 148 bits (373), Expect = 5e-34
Identities = 72/132 (54%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
Frame = -3
Query: 395 SLYIWGSTKRAVQRR-KLQRGNGIFSKIQHIPGAVDIFAYNTLVAETCRFGNLRVALMLM 219
S + +GS + + + L +++ +IPGAVD YNTL+AETC+ GNL A+ L
Sbjct: 500 SFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALF 559
Query: 218 DEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRVFEDLIKRGTFFPNQVMYTCLIDGLFK 39
D+MV+NNVLPDSYTY+S+L GLCRKG+ VTA+ +F + RGT FPN VMYTCL+DGL K
Sbjct: 560 DKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSK 619
Query: 38 AGQPKAAAYYIE 3
AG PKAA Y+ E
Sbjct: 620 AGHPKAAFYFFE 631
Score = 50.4 bits (119), Expect(2) = 6e-07
Identities = 32/87 (36%), Positives = 43/87 (49%)
Frame = -3
Query: 293 DIFAYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRVF 114
D F N LV+ CR G L A + M R ++P+S TY I+ G G + A F
Sbjct: 430 DHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFF 489
Query: 113 EDLIKRGTFFPNQVMYTCLIDGLFKAG 33
+D+IK G P+ Y L+ GL K G
Sbjct: 490 DDMIKCGQ-HPSFFTYGSLLKGLCKGG 515
Score = 27.7 bits (60), Expect(2) = 6e-07
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 400 PSLYTYGALLKGLCRGGNFKEAM 332
P+ TY AL+ G C G+F+EA+
Sbjct: 371 PNCVTYNALIGGHCHVGDFEEAL 393
>emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
Length = 1356
Score = 148 bits (373), Expect = 5e-34
Identities = 72/132 (54%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
Frame = -3
Query: 395 SLYIWGSTKRAVQRR-KLQRGNGIFSKIQHIPGAVDIFAYNTLVAETCRFGNLRVALMLM 219
S + +GS + + + L +++ +IPGAVD YNTL+AETC+ GNL A+ L
Sbjct: 617 SFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALF 676
Query: 218 DEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRVFEDLIKRGTFFPNQVMYTCLIDGLFK 39
D+MV+NNVLPDSYTY+S+L GLCRKG+ VTA+ +F + RGT FPN VMYTCL+DGL K
Sbjct: 677 DKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSK 736
Query: 38 AGQPKAAAYYIE 3
AG PKAA Y+ E
Sbjct: 737 AGHPKAAFYFFE 748
Score = 48.5 bits (114), Expect(2) = 2e-06
Identities = 25/88 (28%), Positives = 48/88 (54%)
Frame = -3
Query: 281 YNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRVFEDLI 102
Y TL+ C+ +A L++ M N+++ YT ++ GLC+ G + A+++ ++
Sbjct: 411 YGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMY 470
Query: 101 KRGTFFPNQVMYTCLIDGLFKAGQPKAA 18
K G P+ + Y+ LI+G + G K+A
Sbjct: 471 KDGV-NPDVITYSSLINGFCRVGNIKSA 497
Score = 27.7 bits (60), Expect(2) = 2e-06
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 400 PSLYTYGALLKGLCRGGNFKEAM 332
P+ TY AL+ G C G+F+EA+
Sbjct: 371 PNCVTYNALIGGHCHVGDFEEAL 393
>ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297310247|gb|EFH40671.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1245
Score = 116 bits (290), Expect(2) = 7e-31
Identities = 53/103 (51%), Positives = 72/103 (69%)
Frame = -3
Query: 317 IQHIPGAVDIFAYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGLCRKGR 138
+Q++P AVD NTL+ C+ GNL A+ L EMV+ ++LPDS+TYTS++ GLCRKG+
Sbjct: 604 LQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGK 663
Query: 137 VVTAIRVFEDLIKRGTFFPNQVMYTCLIDGLFKAGQPKAAAYY 9
V AI ++ RG PN+VMYTC +DG+FKAGQ KA Y+
Sbjct: 664 TVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYF 706
Score = 42.7 bits (99), Expect(2) = 7e-31
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = -1
Query: 406 HHPSLYTYGALLKGLCRGGNFKEAMEFSLKS 314
HHP+ +TYG+LLKGLC+GG+ A +F LKS
Sbjct: 574 HHPTFFTYGSLLKGLCKGGHLIAAEKF-LKS 603
Score = 54.3 bits (129), Expect(2) = 1e-08
Identities = 28/107 (26%), Positives = 52/107 (48%)
Frame = -3
Query: 350 KLQRGNGIFSKIQHIPGAVDIFAYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYT 171
+L+ I +I + + + Y+TL+ CR G L+ + + + M+ PD +T+
Sbjct: 453 RLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFN 512
Query: 170 SILGGLCRKGRVVTAIRVFEDLIKRGTFFPNQVMYTCLIDGLFKAGQ 30
++ LC+ G+V A + G PN V + CLI+G +G+
Sbjct: 513 VLVTSLCKAGKVAEAEEFMRCMTSDG-ILPNAVSFDCLINGYGSSGE 558
Score = 29.6 bits (65), Expect(2) = 1e-08
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 400 PSLYTYGALLKGLCRGGNFKEAME 329
P + TY AL+ G CR G K A E
Sbjct: 436 PDIVTYSALINGFCRVGRLKTAKE 459
Score = 53.5 bits (127), Expect(2) = 2e-07
Identities = 27/92 (29%), Positives = 47/92 (51%)
Frame = -3
Query: 293 DIFAYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRVF 114
D+ YN L+ + CR +L+ +M + + P+ TY ++L G +G+V+ A ++
Sbjct: 262 DVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLL 321
Query: 113 EDLIKRGTFFPNQVMYTCLIDGLFKAGQPKAA 18
+++ G PN V + LIDG G K A
Sbjct: 322 NEMLTFG-LSPNHVTFNALIDGHISEGNFKEA 352
Score = 26.6 bits (57), Expect(2) = 2e-07
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 400 PSLYTYGALLKGLCRGGNFKEAME 329
P++ TY +L C+ G FK A+E
Sbjct: 226 PTIVTYNTVLHWYCKKGRFKAAIE 249
Score = 51.6 bits (122), Expect(2) = 1e-06
Identities = 27/100 (27%), Positives = 54/100 (54%)
Frame = -3
Query: 332 GIFSKIQHIPGAVDIFAYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGL 153
G + +++ V Y ++ C+ G L A+++++EM ++ + PD TY++++ G
Sbjct: 389 GFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGF 448
Query: 152 CRKGRVVTAIRVFEDLIKRGTFFPNQVMYTCLIDGLFKAG 33
CR GR+ TA + + + G PN ++Y+ LI + G
Sbjct: 449 CRVGRLKTAKEIVCRIYRVG-LSPNGIIYSTLIYNCCRMG 487
Score = 25.8 bits (55), Expect(2) = 1e-06
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 400 PSLYTYGALLKGLCRGGNFKEAME 329
P+ T+ AL+ G GNFKEA++
Sbjct: 331 PNHVTFNALIDGHISEGNFKEALK 354
>ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Glycine max]
Length = 1078
Score = 107 bits (267), Expect(2) = 1e-28
Identities = 49/108 (45%), Positives = 73/108 (67%)
Frame = -3
Query: 326 FSKIQHIPGAVDIFAYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGLCR 147
F +++ IP AVD +NT + TCR GNL A+ L++EMV N+ LPD++TYT+++ GLC+
Sbjct: 583 FHRLRCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCK 642
Query: 146 KGRVVTAIRVFEDLIKRGTFFPNQVMYTCLIDGLFKAGQPKAAAYYIE 3
KG++V A+ + I++G PN +YT L+DGL K G +AA Y E
Sbjct: 643 KGKIVAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFE 690
Score = 44.3 bits (103), Expect(2) = 1e-28
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = -1
Query: 406 HHPSLYTYGALLKGLCRGGNFKEAMEF 326
H PSL+TYG LLKGLC GG+ EA++F
Sbjct: 556 HFPSLFTYGGLLKGLCIGGHINEALKF 582
Score = 64.7 bits (156), Expect = 8e-09
Identities = 31/81 (38%), Positives = 50/81 (61%)
Frame = -3
Query: 281 YNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRVFEDLI 102
YNTL++ R G + VA + DEM N+LP+S TY +++ G C G + A+R+ + ++
Sbjct: 283 YNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMV 342
Query: 101 KRGTFFPNQVMYTCLIDGLFK 39
G PN+V Y L++GL+K
Sbjct: 343 SHG-LRPNEVTYGALLNGLYK 362
Score = 59.3 bits (142), Expect = 3e-07
Identities = 35/120 (29%), Positives = 59/120 (49%)
Frame = -3
Query: 362 VQRRKLQRGNGIFSKIQHIPGAVDIFAYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDS 183
V+ K++ +F ++ + YNTL+A C GN+ AL LMD MV + + P+
Sbjct: 291 VREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNE 350
Query: 182 YTYTSILGGLCRKGRVVTAIRVFEDLIKRGTFFPNQVMYTCLIDGLFKAGQPKAAAYYIE 3
TY ++L GL + + E + + G + + YT +IDGL K G + A ++
Sbjct: 351 VTYGALLNGLYKNAEFGMVSSILERM-RMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLD 409
Score = 55.1 bits (131), Expect = 6e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = -3
Query: 296 VDIFAYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSYTYTSILGGLCRKGRVVTAIRV 117
VD+ YN + CR +L+ M RN V P+ TY +++ G R+G++ A +V
Sbjct: 243 VDVCTYNVFIDNLCRDSRSAKGYLLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKV 302
Query: 116 FEDLIKRGTFFPNQVMYTCLIDG 48
F+++ PN + Y LI G
Sbjct: 303 FDEM-SLFNLLPNSITYNTLIAG 324
Score = 49.7 bits (117), Expect(2) = 6e-06
Identities = 29/114 (25%), Positives = 50/114 (43%)
Frame = -3
Query: 359 QRRKLQRGNGIFSKIQHIPGAVDIFAYNTLVAETCRFGNLRVALMLMDEMVRNNVLPDSY 180
+R K + + K++ YNTL+ C+ G + A L+D M + D
Sbjct: 187 ERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVC 246
Query: 179 TYTSILGGLCRKGRVVTAIRVFEDLIKRGTFFPNQVMYTCLIDGLFKAGQPKAA 18
TY + LCR R + + + +R +PN++ Y LI G + G+ + A
Sbjct: 247 TYNVFIDNLCRDSRSAKGYLLLKRM-RRNMVYPNEITYNTLISGFVREGKIEVA 299
Score = 25.0 bits (53), Expect(2) = 6e-06
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 400 PSLYTYGALLKGLCRGGNFKEA 335
P + T+ LL LC G FK A
Sbjct: 173 PDVATFNILLNALCERGKFKNA 194