BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00017911
         (1019 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI32743.3| unnamed protein product [Vitis vinifera]              414   e-113
ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containi...   414   e-113
ref|XP_002530985.1| pentatricopeptide repeat-containing protein,...   384   e-104
ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   380   e-103
ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containi...   380   e-103

>emb|CBI32743.3| unnamed protein product [Vitis vinifera]
          Length = 772

 Score =  414 bits (1063), Expect = e-113
 Identities = 208/312 (66%), Positives = 248/312 (79%), Gaps = 5/312 (1%)
 Frame = -3

Query: 921 SICNLYNQEKMYHITASKSPHFKLYKASSVIPLKSLSFCSVALSSPD---PPLQNVQISG 751
           S+  L+  +    I+ + +P       SS+  ++S S    ++S+ D    P+    +SG
Sbjct: 5   SVTKLHQWKPRLFISGASNP-------SSLNFIQSFSSVDESISAGDLTSSPIPETPVSG 57

Query: 750 DPIP--NLDSQSTQRTANRRALRGKHENPEKLEDLICRMMANRAWTTRLQNSIRSLVPEF 577
            P    NL +      A+ R  RGK  NPEK+ED+ICRMMANRAWTTRLQNSIRSLVP+F
Sbjct: 58  SPSEPGNLTAAEAGEKASPRTPRGKLRNPEKIEDIICRMMANRAWTTRLQNSIRSLVPQF 117

Query: 576 DNHLVYNVLHSARNSEHALQFFRWVERSGLFKHDRESHYKIIEILGRASKLNHARCILLD 397
           D+ LV+NVLH +RNS+HALQFFRWVER+GLF+HDR++H KIIEILGRASKLNHARCILLD
Sbjct: 118 DHSLVWNVLHGSRNSDHALQFFRWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLD 177

Query: 396 MPKKGLEWDEDLFVLLIESYGKAGIVQESVKLFQNMGELGVERTIKSYNILFKVIMRRGR 217
           MPKKG+EWDEDLFVLLI+SYGKAGIVQESVK+FQ M ELGVERTIKSY+ LFKVI+RRGR
Sbjct: 178 MPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGR 237

Query: 216 YFMAKRYFNKMLSEGIVPTVHTYNLMIWGFFLSKKVETANRFFEDMKTREILPDVVTYNS 37
           Y MAKRYFN ML+EG++PT HTYN+MIWGFFLS KVETANRFFE+MK R I PDVVTYN+
Sbjct: 238 YMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNT 297

Query: 36  MINGYYRVNKVE 1
           MINGYYR+ K+E
Sbjct: 298 MINGYYRIKKME 309


>ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
           [Vitis vinifera]
          Length = 763

 Score =  414 bits (1063), Expect = e-113
 Identities = 208/312 (66%), Positives = 248/312 (79%), Gaps = 5/312 (1%)
 Frame = -3

Query: 921 SICNLYNQEKMYHITASKSPHFKLYKASSVIPLKSLSFCSVALSSPD---PPLQNVQISG 751
           S+  L+  +    I+ + +P       SS+  ++S S    ++S+ D    P+    +SG
Sbjct: 5   SVTKLHQWKPRLFISGASNP-------SSLNFIQSFSSVDESISAGDLTSSPIPETPVSG 57

Query: 750 DPIP--NLDSQSTQRTANRRALRGKHENPEKLEDLICRMMANRAWTTRLQNSIRSLVPEF 577
            P    NL +      A+ R  RGK  NPEK+ED+ICRMMANRAWTTRLQNSIRSLVP+F
Sbjct: 58  SPSEPGNLTAAEAGEKASPRTPRGKLRNPEKIEDIICRMMANRAWTTRLQNSIRSLVPQF 117

Query: 576 DNHLVYNVLHSARNSEHALQFFRWVERSGLFKHDRESHYKIIEILGRASKLNHARCILLD 397
           D+ LV+NVLH +RNS+HALQFFRWVER+GLF+HDR++H KIIEILGRASKLNHARCILLD
Sbjct: 118 DHSLVWNVLHGSRNSDHALQFFRWVERAGLFRHDRDTHLKIIEILGRASKLNHARCILLD 177

Query: 396 MPKKGLEWDEDLFVLLIESYGKAGIVQESVKLFQNMGELGVERTIKSYNILFKVIMRRGR 217
           MPKKG+EWDEDLFVLLI+SYGKAGIVQESVK+FQ M ELGVERTIKSY+ LFKVI+RRGR
Sbjct: 178 MPKKGVEWDEDLFVLLIDSYGKAGIVQESVKVFQKMKELGVERTIKSYDALFKVILRRGR 237

Query: 216 YFMAKRYFNKMLSEGIVPTVHTYNLMIWGFFLSKKVETANRFFEDMKTREILPDVVTYNS 37
           Y MAKRYFN ML+EG++PT HTYN+MIWGFFLS KVETANRFFE+MK R I PDVVTYN+
Sbjct: 238 YMMAKRYFNAMLNEGVMPTCHTYNIMIWGFFLSLKVETANRFFEEMKERRISPDVVTYNT 297

Query: 36  MINGYYRVNKVE 1
           MINGYYR+ K+E
Sbjct: 298 MINGYYRIKKME 309


>ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529437|gb|EEF31397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 753

 Score =  384 bits (986), Expect = e-104
 Identities = 197/305 (64%), Positives = 236/305 (77%), Gaps = 8/305 (2%)
 Frame = -3

Query: 891 MYHITASKSPHFKLYKASSVIPLKSLSFCSVALSSPDPPLQNVQISGDPIPNLD------ 730
           M +++ SK    ++Y     IP  SL FC++   + DP     QIS      L+      
Sbjct: 1   MAYLSLSKPYKSRVYHT---IPRLSLHFCTL---TQDPIPSVTQISNPQSETLNDAAAAA 54

Query: 729 --SQSTQRTANRRALRGKHENPEKLEDLICRMMANRAWTTRLQNSIRSLVPEFDNHLVYN 556
             +Q  Q    +R  RGK  +PEK+ED I RMMANR WTTRLQNSIR+LVP FD+ LVYN
Sbjct: 55  AATQENQTQTYQRIPRGKRPDPEKVEDTISRMMANRPWTTRLQNSIRNLVPHFDHSLVYN 114

Query: 555 VLHSARNSEHALQFFRWVERSGLFKHDRESHYKIIEILGRASKLNHARCILLDMPKKGLE 376
           VLH+ARNSEHALQFFRWVER+GLFK+DR++H KIIEILGRASKLNHARCILLDMPKKG+E
Sbjct: 115 VLHAARNSEHALQFFRWVERAGLFKNDRDTHMKIIEILGRASKLNHARCILLDMPKKGVE 174

Query: 375 WDEDLFVLLIESYGKAGIVQESVKLFQNMGELGVERTIKSYNILFKVIMRRGRYFMAKRY 196
           WDE +FV+LIESYGKAGIVQE+VK+F  M ELGVER+IKSY+ LFKVI+RRGRY MAKR 
Sbjct: 175 WDEYMFVVLIESYGKAGIVQEAVKIFNKMNELGVERSIKSYDALFKVILRRGRYMMAKRV 234

Query: 195 FNKMLSEGIVPTVHTYNLMIWGFFLSKKVETANRFFEDMKTREILPDVVTYNSMINGYYR 16
           FNKML++GI PT HTYN+M+WGFFLS ++ETA RF++DMK R I PDVVTYN+MING+YR
Sbjct: 235 FNKMLNDGIQPTRHTYNIMLWGFFLSLRLETAMRFYDDMKNRGISPDVVTYNTMINGFYR 294

Query: 15  VNKVE 1
             K+E
Sbjct: 295 FKKME 299



 Score = 59.7 bits (143), Expect = 1e-06
 Identities = 38/189 (20%), Positives = 94/189 (49%), Gaps = 3/189 (1%)
 Frame = -3

Query: 582 EFDNHLVYNVLHSARNS---EHALQFFRWVERSGLFKHDRESHYKIIEILGRASKLNHAR 412
           E+D ++   ++ S   +   + A++ F  +   G+ +   +S+  + +++ R  +   A+
Sbjct: 174 EWDEYMFVVLIESYGKAGIVQEAVKIFNKMNELGV-ERSIKSYDALFKVILRRGRYMMAK 232

Query: 411 CILLDMPKKGLEWDEDLFVLLIESYGKAGIVQESVKLFQNMGELGVERTIKSYNILFKVI 232
            +   M   G++     + +++  +  +  ++ +++ + +M   G+   + +YN +    
Sbjct: 233 RVFNKMLNDGIQPTRHTYNIMLWGFFLSLRLETAMRFYDDMKNRGISPDVVTYNTMINGF 292

Query: 231 MRRGRYFMAKRYFNKMLSEGIVPTVHTYNLMIWGFFLSKKVETANRFFEDMKTREILPDV 52
            R  +   A++ F +M  + I PTV +Y  MI G+    +V+   R  E+MK+  I P+V
Sbjct: 293 YRFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKGYVAVDRVDDGLRLLEEMKSFNIKPNV 352

Query: 51  VTYNSMING 25
            TY++++ G
Sbjct: 353 HTYSTLLPG 361


>ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  380 bits (977), Expect = e-103
 Identities = 197/315 (62%), Positives = 238/315 (75%), Gaps = 18/315 (5%)
 Frame = -3

Query: 891 MYHITASKS--PHFKLYKASSV---IPLKSLSFCSVALSSPDPPLQNVQISG---DPIPN 736
           M HI+ SK    H+++  +SS+     L SL F     SS   P+     +G   DP  +
Sbjct: 1   MAHISVSKLHFTHYRVLSSSSISKPTALNSLHF----FSSTQEPISTATQNGSPNDPSAS 56

Query: 735 LDSQSTQ----------RTANRRALRGKHENPEKLEDLICRMMANRAWTTRLQNSIRSLV 586
            D+   Q          +    R  RG+  +PEKLE +IC+MMANR WTTRLQNSIRSLV
Sbjct: 57  SDAALPQTGESAAVNGVQQVKGRIPRGRPRDPEKLEXIICKMMANREWTTRLQNSIRSLV 116

Query: 585 PEFDNHLVYNVLHSARNSEHALQFFRWVERSGLFKHDRESHYKIIEILGRASKLNHARCI 406
           P+FD++LVYNVLH+A+ SEHAL FFRWVER+GLF+HDRE+H+KIIEILGRASKLNHARCI
Sbjct: 117 PQFDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQHDRETHFKIIEILGRASKLNHARCI 176

Query: 405 LLDMPKKGLEWDEDLFVLLIESYGKAGIVQESVKLFQNMGELGVERTIKSYNILFKVIMR 226
           LLDMP KG++WDEDLFV+LIESYGKAGIVQE+VK+FQ M ELGVER++KSY+ LFK IMR
Sbjct: 177 LLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMR 236

Query: 225 RGRYFMAKRYFNKMLSEGIVPTVHTYNLMIWGFFLSKKVETANRFFEDMKTREILPDVVT 46
           RGRY MAKRYFN ML+EGI P  HTYN+M+WGFFLS ++ETA RF+EDMK+R I PDVVT
Sbjct: 237 RGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISPDVVT 296

Query: 45  YNSMINGYYRVNKVE 1
           YN+MINGY R   +E
Sbjct: 297 YNTMINGYCRFKMME 311


>ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Cucumis sativus]
          Length = 760

 Score =  380 bits (977), Expect = e-103
 Identities = 197/315 (62%), Positives = 238/315 (75%), Gaps = 18/315 (5%)
 Frame = -3

Query: 891 MYHITASKS--PHFKLYKASSV---IPLKSLSFCSVALSSPDPPLQNVQISG---DPIPN 736
           M HI+ SK    H+++  +SS+     L SL F     SS   P+     +G   DP  +
Sbjct: 1   MAHISVSKLHFTHYRVLSSSSISKPTALNSLHF----FSSTQEPISTATQNGSPNDPSAS 56

Query: 735 LDSQSTQ----------RTANRRALRGKHENPEKLEDLICRMMANRAWTTRLQNSIRSLV 586
            D+   Q          +    R  RG+  +PEKLE +IC+MMANR WTTRLQNSIRSLV
Sbjct: 57  SDAALPQTGESAAVNGVQQVKGRIPRGRPRDPEKLEKIICKMMANREWTTRLQNSIRSLV 116

Query: 585 PEFDNHLVYNVLHSARNSEHALQFFRWVERSGLFKHDRESHYKIIEILGRASKLNHARCI 406
           P+FD++LVYNVLH+A+ SEHAL FFRWVER+GLF+HDRE+H+KIIEILGRASKLNHARCI
Sbjct: 117 PQFDHNLVYNVLHAAKKSEHALNFFRWVERAGLFQHDRETHFKIIEILGRASKLNHARCI 176

Query: 405 LLDMPKKGLEWDEDLFVLLIESYGKAGIVQESVKLFQNMGELGVERTIKSYNILFKVIMR 226
           LLDMP KG++WDEDLFV+LIESYGKAGIVQE+VK+FQ M ELGVER++KSY+ LFK IMR
Sbjct: 177 LLDMPNKGVQWDEDLFVVLIESYGKAGIVQEAVKIFQKMKELGVERSVKSYDALFKEIMR 236

Query: 225 RGRYFMAKRYFNKMLSEGIVPTVHTYNLMIWGFFLSKKVETANRFFEDMKTREILPDVVT 46
           RGRY MAKRYFN ML+EGI P  HTYN+M+WGFFLS ++ETA RF+EDMK+R I PDVVT
Sbjct: 237 RGRYMMAKRYFNAMLNEGIEPIRHTYNVMLWGFFLSLRLETAKRFYEDMKSRGISPDVVT 296

Query: 45  YNSMINGYYRVNKVE 1
           YN+MINGY R   +E
Sbjct: 297 YNTMINGYCRFKMME 311