BLASTX nr result
ID: Bupleurum21_contig00017697
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00017697
(665 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002314129.1| predicted protein [Populus trichocarpa] gi|2... 100 3e-19
ref|XP_002314127.1| predicted protein [Populus trichocarpa] gi|2... 100 3e-19
ref|NP_001059374.1| Os07g0281000 [Oryza sativa Japonica Group] g... 99 1e-18
ref|XP_004144722.1| PREDICTED: zinc finger CCCH domain-containin... 98 1e-18
gb|ABC01900.1| RRM-containing RNA-binding protein-like protein [... 97 3e-18
>ref|XP_002314129.1| predicted protein [Populus trichocarpa] gi|222850537|gb|EEE88084.1|
predicted protein [Populus trichocarpa]
Length = 531
Score = 100 bits (248), Expect = 3e-19
Identities = 68/157 (43%), Positives = 84/157 (53%), Gaps = 25/157 (15%)
Frame = -2
Query: 664 GDDCPYRHEGPVMIDPMEAIKKWEYM----------------MLPLEPQDDKSNRTLIVG 533
G +CPYRHE P+ + + K Y M LEP +D+S +TL VG
Sbjct: 174 GAECPYRHEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGDMPSLEPPEDESIKTLYVG 233
Query: 532 --DLRFNEQDIRDVILAHGEIETIKMGPTPGCVVVTYTTREGAEKAMKELFNKLV-NGMR 362
D R NEQD+RD AHGEIE+IKM P VTYTTREGAEKA EL N+LV G+R
Sbjct: 234 GLDARINEQDLRDQFYAHGEIESIKMVPQRAIAFVTYTTREGAEKAAAELSNRLVIKGLR 293
Query: 361 LGVMWYTIAQTGSPYQPIQSENEYR------HYEMLP 269
L +MW + +P +S +E R H MLP
Sbjct: 294 LKLMW---GRPQAPKPESESSDEARQQAAMAHSGMLP 327
Score = 85.5 bits (210), Expect = 8e-15
Identities = 48/85 (56%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Frame = -2
Query: 280 EMLPLEPLDDKSIRTLCVG--DPRFNQQDLRDVILAHGEVETIEMGGPSSGCVVVTYTTR 107
+M LEP +D+SI+TL VG D R N+QDLRD AHGE+E+I+M P VTYTTR
Sbjct: 215 DMPSLEPPEDESIKTLYVGGLDARINEQDLRDQFYAHGEIESIKMV-PQRAIAFVTYTTR 273
Query: 106 EGAEKAMKELLNKLV-KGMRPRVIW 35
EGAEKA EL N+LV KG+R +++W
Sbjct: 274 EGAEKAAAELSNRLVIKGLRLKLMW 298
>ref|XP_002314127.1| predicted protein [Populus trichocarpa] gi|222850535|gb|EEE88082.1|
predicted protein [Populus trichocarpa]
Length = 531
Score = 100 bits (248), Expect = 3e-19
Identities = 68/157 (43%), Positives = 84/157 (53%), Gaps = 25/157 (15%)
Frame = -2
Query: 664 GDDCPYRHEGPVMIDPMEAIKKWEYM----------------MLPLEPQDDKSNRTLIVG 533
G +CPYRHE P+ + + K Y M LEP +D+S +TL VG
Sbjct: 174 GAECPYRHEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGDMPSLEPPEDESIKTLYVG 233
Query: 532 --DLRFNEQDIRDVILAHGEIETIKMGPTPGCVVVTYTTREGAEKAMKELFNKLV-NGMR 362
D R NEQD+RD AHGEIE+IKM P VTYTTREGAEKA EL N+LV G+R
Sbjct: 234 GLDARINEQDLRDQFYAHGEIESIKMVPQRAIAFVTYTTREGAEKAAAELSNRLVIKGLR 293
Query: 361 LGVMWYTIAQTGSPYQPIQSENEYR------HYEMLP 269
L +MW + +P +S +E R H MLP
Sbjct: 294 LKLMW---GRPQAPKPESESSDEARQQAAMAHSGMLP 327
Score = 85.5 bits (210), Expect = 8e-15
Identities = 48/85 (56%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Frame = -2
Query: 280 EMLPLEPLDDKSIRTLCVG--DPRFNQQDLRDVILAHGEVETIEMGGPSSGCVVVTYTTR 107
+M LEP +D+SI+TL VG D R N+QDLRD AHGE+E+I+M P VTYTTR
Sbjct: 215 DMPSLEPPEDESIKTLYVGGLDARINEQDLRDQFYAHGEIESIKMV-PQRAIAFVTYTTR 273
Query: 106 EGAEKAMKELLNKLV-KGMRPRVIW 35
EGAEKA EL N+LV KG+R +++W
Sbjct: 274 EGAEKAAAELSNRLVIKGLRLKLMW 298
>ref|NP_001059374.1| Os07g0281000 [Oryza sativa Japonica Group]
gi|75325391|sp|Q6Z358.1|C3H49_ORYSJ RecName: Full=Zinc
finger CCCH domain-containing protein 49; Short=OsC3H49
gi|34394813|dbj|BAC84225.1| RRM-containing RNA-binding
protein-like [Oryza sativa Japonica Group]
gi|113610910|dbj|BAF21288.1| Os07g0281000 [Oryza sativa
Japonica Group] gi|222636833|gb|EEE66965.1| hypothetical
protein OsJ_23846 [Oryza sativa Japonica Group]
Length = 486
Score = 98.6 bits (244), Expect = 1e-18
Identities = 65/143 (45%), Positives = 76/143 (53%), Gaps = 19/143 (13%)
Frame = -2
Query: 664 GDDCPYRHEGPVMIDPMEAIKKWEYM----------------MLPLEPQDDKSNRTLIVG 533
G +CPYRHE P + + K Y M L P DD+S RTL +G
Sbjct: 174 GAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDESIRTLYIG 233
Query: 532 --DLRFNEQDIRDVILAHGEIETIKMGPTPGCVVVTYTTREGAEKAMKELFNKLV-NGMR 362
D R EQD+RD AHGEIETI+M C VTYTTREGAEKA +EL NKLV G+R
Sbjct: 234 GLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEELANKLVIKGVR 293
Query: 361 LGVMWYTIAQTGSPYQPIQSENE 293
L +MW G P P E+E
Sbjct: 294 LKLMW------GKPQAPKPEEDE 310
Score = 88.2 bits (217), Expect = 1e-15
Identities = 53/96 (55%), Positives = 63/96 (65%), Gaps = 7/96 (7%)
Frame = -2
Query: 280 EMLPLEPLDDKSIRTLCVG--DPRFNQQDLRDVILAHGEVETIEMGGPSSGCVVVTYTTR 107
EM L P DD+SIRTL +G D R +QDLRD AHGE+ETI M C VTYTTR
Sbjct: 215 EMPSLTPPDDESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMV-LQRACAFVTYTTR 273
Query: 106 EGAEKAMKELLNKLV-KGMRPRVIW----LPIPQHD 14
EGAEKA +EL NKLV KG+R +++W P P+ D
Sbjct: 274 EGAEKAAEELANKLVIKGVRLKLMWGKPQAPKPEED 309
>ref|XP_004144722.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
[Cucumis sativus] gi|449525922|ref|XP_004169965.1|
PREDICTED: zinc finger CCCH domain-containing protein
40-like [Cucumis sativus]
Length = 517
Score = 98.2 bits (243), Expect = 1e-18
Identities = 67/156 (42%), Positives = 84/156 (53%), Gaps = 24/156 (15%)
Frame = -2
Query: 664 GDDCPYRHEGPVMIDPMEAIKKWEYM----------------MLPLEPQDDKSNRTLIVG 533
G +CPYRHE P + + K Y M LEP +D+S RTL VG
Sbjct: 174 GSECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPEDESIRTLYVG 233
Query: 532 --DLRFNEQDIRDVILAHGEIETIKMGPTPGCVVVTYTTREGAEKAMKELFNKLV-NGMR 362
D R +EQD+RD AHGEIE+I+M C VTYTTREGAEKA +EL NKLV G+R
Sbjct: 234 GLDARVSEQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLR 293
Query: 361 LGVMWYTIAQTGSPYQPIQSENEYR-----HYEMLP 269
L +MW + +P I+ +E + H MLP
Sbjct: 294 LKLMW---GRPQAPKAEIEGSDEAKQAAVAHSGMLP 326
Score = 85.5 bits (210), Expect = 8e-15
Identities = 49/85 (57%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Frame = -2
Query: 280 EMLPLEPLDDKSIRTLCVG--DPRFNQQDLRDVILAHGEVETIEMGGPSSGCVVVTYTTR 107
EM LEP +D+SIRTL VG D R ++QDLRD AHGE+E+I M C VTYTTR
Sbjct: 215 EMPSLEPPEDESIRTLYVGGLDARVSEQDLRDNFYAHGEIESIRMV-LQRACAFVTYTTR 273
Query: 106 EGAEKAMKELLNKLV-KGMRPRVIW 35
EGAEKA +EL NKLV +G+R +++W
Sbjct: 274 EGAEKAAEELSNKLVIRGLRLKLMW 298
>gb|ABC01900.1| RRM-containing RNA-binding protein-like protein [Solanum tuberosum]
Length = 487
Score = 97.1 bits (240), Expect = 3e-18
Identities = 61/125 (48%), Positives = 72/125 (57%), Gaps = 19/125 (15%)
Frame = -2
Query: 664 GDDCPYRHEGPVMIDPMEAIKKWEYM----------------MLPLEPQDDKSNRTLIVG 533
G +CPYRHE P + + K Y M LEP DD+S RTL VG
Sbjct: 174 GLECPYRHEMPETGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIRTLYVG 233
Query: 532 --DLRFNEQDIRDVILAHGEIETIKMGPTPGCVVVTYTTREGAEKAMKELFNKLV-NGMR 362
D R +EQD+RD AHGEIE+IKM GC VTYTTREGA KA +EL NKLV G+R
Sbjct: 234 GVDARISEQDLRDQFYAHGEIESIKMVLQRGCAFVTYTTREGAVKAAEELANKLVIKGLR 293
Query: 361 LGVMW 347
L ++W
Sbjct: 294 LKLLW 298
Score = 89.7 bits (221), Expect = 4e-16
Identities = 51/85 (60%), Positives = 62/85 (72%), Gaps = 3/85 (3%)
Frame = -2
Query: 280 EMLPLEPLDDKSIRTLCVG--DPRFNQQDLRDVILAHGEVETIEMGGPSSGCVVVTYTTR 107
EM LEP DD+SIRTL VG D R ++QDLRD AHGE+E+I+M GC VTYTTR
Sbjct: 215 EMPSLEPPDDESIRTLYVGGVDARISEQDLRDQFYAHGEIESIKMV-LQRGCAFVTYTTR 273
Query: 106 EGAEKAMKELLNKLV-KGMRPRVIW 35
EGA KA +EL NKLV KG+R +++W
Sbjct: 274 EGAVKAAEELANKLVIKGLRLKLLW 298