BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00016940
         (1319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containi...   401   e-128
ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containi...   365   e-118
ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containi...   369   e-116
ref|XP_003608637.1| Pentatricopeptide repeat-containing protein ...   362   e-116
ref|XP_002863397.1| pentatricopeptide repeat-containing protein ...   364   e-115

>ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic [Vitis vinifera]
          Length = 723

 Score =  401 bits (1031), Expect(2) = e-128
 Identities = 197/292 (67%), Positives = 233/292 (79%), Gaps = 1/292 (0%)
 Frame = +1

Query: 445  KTLTALVRIYGRARWAKDALELWNKMRSNEWQVDYILYNTLLSMCADLGLEEEAKILFQD 624
            KTLTALV+IYG+ARWA+DALELW +MRSN W +D+ILYNTLLSMCADLGLEEEA+ LF+D
Sbjct: 375  KTLTALVKIYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADLGLEEEAEKLFED 434

Query: 625  MKKSEKCKPDSWSYTAMLNIYGSGGDAEKAMHLFDEMSELNVELNVMGCTCLIQCLGKVR 804
            MKKSE C+PDSWSYTAMLNIYGSGG+ ++AM LFDEMSEL V++NVMGCTCL QCLG+ R
Sbjct: 435  MKKSEHCRPDSWSYTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCLGRAR 494

Query: 805  RIDDLVKVFRVSIIDRQIKPDDRLCGCLLSVVSYCEG-EHLDKVLTCLQEAXXXXXXXXX 981
            RIDDLVKVF VS ++R +KPDDRLCGCLLSVVS+CEG E  +KVL CLQ+A         
Sbjct: 495  RIDDLVKVFEVS-LERGVKPDDRLCGCLLSVVSFCEGAEDANKVLACLQQA-NPKLVAFV 552

Query: 982  XXXNDKTDINTLDTEFREILSDTSVDSRRPFCNCLIDICRNRNLHKRSHXXXXXXXXXXX 1161
                +K     L  EFR IL+DT+V++RRPFCNCLIDICRNR+LH+R+H           
Sbjct: 553  NLLEEKISFEALKEEFRGILTDTAVEARRPFCNCLIDICRNRSLHERAHELLYLGTLYGL 612

Query: 1162 XSGVHTKTAEEWRLNVRSLSVGAAHTALEDWMSKLIKLVRDEETLPELFSAN 1317
              G+H +TA+EW L+VRSLSVGAAHTALE+WM  L K+V+ EE LPE FSAN
Sbjct: 613  YPGLHNRTADEWCLDVRSLSVGAAHTALEEWMGTLSKIVQREEALPEAFSAN 664



 Score = 85.1 bits (209), Expect(2) = e-128
 Identities = 38/60 (63%), Positives = 48/60 (80%)
 Frame = +2

Query: 254 GKLFAQAGDYDGIRYVFQEMKAAAVEPDLFLYNTLFEALIKANKPGLAKGLFGSMISSGI 433
           GK+F +AGDYDGIRYV QEMK+  V+P+L +YNTL EA+ KA KPGLA+ LF  M+ SG+
Sbjct: 311 GKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGV 370



 Score = 63.9 bits (154), Expect = 9e-08
 Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
 Frame = +1

Query: 7   PSVLTLQRHKCSSSSFSPHIKHLRCL---INNLNISAQSHFFQILENYPCSITRDDALLF 177
           PSVL+LQRHK  + S++P I+ L+     IN    S +S F  +LE  P   TRD+ALL 
Sbjct: 113 PSVLSLQRHKRHNYSYNPQIRDLKLFAKKINESESSDESEFLAVLEQIPHPPTRDNALLL 172

Query: 178 LNSLKSWQKT 207
           LNSLK W KT
Sbjct: 173 LNSLKPWPKT 182


>ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic-like [Glycine max]
          Length = 712

 Score =  365 bits (937), Expect(2) = e-118
 Identities = 180/293 (61%), Positives = 223/293 (76%), Gaps = 1/293 (0%)
 Frame = +1

Query: 439  NEKTLTALVRIYGRARWAKDALELWNKMRSNEWQVDYILYNTLLSMCADLGLEEEAKILF 618
            NEKTLTA+++IYG+ARW++DALELW +M+ N W +D+ILYNTLL+MCAD+GL EEA+ LF
Sbjct: 363  NEKTLTAVIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLF 422

Query: 619  QDMKKSEKCKPDSWSYTAMLNIYGSGGDAEKAMHLFDEMSELNVELNVMGCTCLIQCLGK 798
            +DMK+S  CKPDSWSYTAMLNIYGS GD +KAM LFDEM +L VELNVMG TCLIQCLG+
Sbjct: 423  RDMKQSVHCKPDSWSYTAMLNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCLIQCLGR 482

Query: 799  VRRIDDLVKVFRVSIIDRQIKPDDRLCGCLLSVVSYCEGEH-LDKVLTCLQEAXXXXXXX 975
                DDLV+VF +S ++R IKPDDRLCGCLLSVVS  +G +  +KVL CLQ+A       
Sbjct: 483  AMEFDDLVRVFDIS-VERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQQANPKLVAF 541

Query: 976  XXXXXNDKTDINTLDTEFREILSDTSVDSRRPFCNCLIDICRNRNLHKRSHXXXXXXXXX 1155
                 ++KT   T+  EF+ I+S+ +V+ RRPFCNCLIDICRN++L +R+H         
Sbjct: 542  IHLIEDEKTSFETVKEEFKGIMSNAAVEVRRPFCNCLIDICRNKDLLERAHELLYLGTLY 601

Query: 1156 XXXSGVHTKTAEEWRLNVRSLSVGAAHTALEDWMSKLIKLVRDEETLPELFSA 1314
                G+H KT EEW L+VRSLSVGAA TALE+WM  L K+V+ EETLPELF A
Sbjct: 602  GLYPGLHNKTVEEWCLDVRSLSVGAALTALEEWMWTLTKIVKREETLPELFLA 654



 Score = 87.8 bits (216), Expect(2) = e-118
 Identities = 40/60 (66%), Positives = 49/60 (81%)
 Frame = +2

Query: 254 GKLFAQAGDYDGIRYVFQEMKAAAVEPDLFLYNTLFEALIKANKPGLAKGLFGSMISSGI 433
           GK+F +AGDYDGIRYVFQEM++  V+P+L +YNTL EA+ KA KPG A+GLF  MI SGI
Sbjct: 301 GKMFGEAGDYDGIRYVFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGI 360


>ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic-like [Cucumis sativus]
            gi|449521148|ref|XP_004167592.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g46580,
            chloroplastic-like [Cucumis sativus]
          Length = 710

 Score =  369 bits (946), Expect(2) = e-116
 Identities = 182/297 (61%), Positives = 223/297 (75%), Gaps = 1/297 (0%)
 Frame = +1

Query: 427  GDSTNEKTLTALVRIYGRARWAKDALELWNKMRSNEWQVDYILYNTLLSMCADLGLEEEA 606
            G + NEKTLTALV+IYG+ARWA+DAL+LW +MRSN W +D+ILYNTLL+MCADLGLEEEA
Sbjct: 355  GITPNEKTLTALVKIYGKARWARDALDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEA 414

Query: 607  KILFQDMKKSEKCKPDSWSYTAMLNIYGSGGDAEKAMHLFDEMSELNVELNVMGCTCLIQ 786
            + LF++MKKS+  +PDSWSYTAMLNIYGSGG+ +++M LF+EM EL VE+NVM CTCLIQ
Sbjct: 415  ETLFEEMKKSKHSRPDSWSYTAMLNIYGSGGNVKRSMELFEEMLELGVEINVMCCTCLIQ 474

Query: 787  CLGKVRRIDDLVKVFRVSIIDRQIKPDDRLCGCLLSVVSYC-EGEHLDKVLTCLQEAXXX 963
            CLGK  RIDDLV+VF VS + + IKPDDRLCGCLLSV+S C   E ++KV TCLQ+A   
Sbjct: 475  CLGKSGRIDDLVRVFNVS-VQKGIKPDDRLCGCLLSVLSLCYNSEDINKVFTCLQQANPK 533

Query: 964  XXXXXXXXXNDKTDINTLDTEFREILSDTSVDSRRPFCNCLIDICRNRNLHKRSHXXXXX 1143
                      +      +  EFR IL +T+ ++RRPFCNCLIDICRN+NL +R+H     
Sbjct: 534  LVSFINLLQQNDITFEVVKNEFRNILGETAPEARRPFCNCLIDICRNQNLRERAHELLYL 593

Query: 1144 XXXXXXXSGVHTKTAEEWRLNVRSLSVGAAHTALEDWMSKLIKLVRDEETLPELFSA 1314
                    G+H KT  EW L+VRSLSVGAA TALE+WM  L K+V+ EE LPEL SA
Sbjct: 594  GSLYGLYPGLHNKTETEWCLDVRSLSVGAAQTALEEWMITLSKIVQREEALPELLSA 650



 Score = 79.3 bits (194), Expect(2) = e-116
 Identities = 35/60 (58%), Positives = 46/60 (76%)
 Frame = +2

Query: 254 GKLFAQAGDYDGIRYVFQEMKAAAVEPDLFLYNTLFEALIKANKPGLAKGLFGSMISSGI 433
           GK+F +AGDYDGI YV QEMK+  ++P+L +YNTL +A+ KA KPG A+ LF  M+ SGI
Sbjct: 297 GKMFGEAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGI 356


>ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355509692|gb|AES90834.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 715

 Score =  362 bits (928), Expect(2) = e-116
 Identities = 177/297 (59%), Positives = 223/297 (75%), Gaps = 1/297 (0%)
 Frame = +1

Query: 427  GDSTNEKTLTALVRIYGRARWAKDALELWNKMRSNEWQVDYILYNTLLSMCADLGLEEEA 606
            G + NEKTLTA+++IYG+ARW+KDALELW +M+ N W +D+ILYNTLL+MCAD+GL EEA
Sbjct: 360  GIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADVGLIEEA 419

Query: 607  KILFQDMKKSEKCKPDSWSYTAMLNIYGSGGDAEKAMHLFDEMSELNVELNVMGCTCLIQ 786
            + LF+DMK+SE CKPDSWSYTAMLNIYGS G  +KAM LF+EMS+  +ELNVMGCTCLIQ
Sbjct: 420  ETLFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQ 479

Query: 787  CLGKVRRIDDLVKVFRVSIIDRQIKPDDRLCGCLLSVVSYCEG-EHLDKVLTCLQEAXXX 963
            CLGK   IDDLVKVF +S ++R +KPDDRLCGCLLSVVS  +G +  +KVL CLQ A   
Sbjct: 480  CLGKAMEIDDLVKVFDIS-VERGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPK 538

Query: 964  XXXXXXXXXNDKTDINTLDTEFREILSDTSVDSRRPFCNCLIDICRNRNLHKRSHXXXXX 1143
                     +++T   T+  EF+ I+S+  V+ RRPFCNCLIDICRN++L +R+H     
Sbjct: 539  LVAFIQLIVDEETSFETVKEEFKAIMSNAVVEVRRPFCNCLIDICRNKDLVERAHELLYL 598

Query: 1144 XXXXXXXSGVHTKTAEEWRLNVRSLSVGAAHTALEDWMSKLIKLVRDEETLPELFSA 1314
                     +H KT  EW L+VR+LSVGAA TALE+WM+ L K+V+ EE LP+LF A
Sbjct: 599  GTLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEWMTTLTKIVKREEALPDLFLA 655



 Score = 84.3 bits (207), Expect(2) = e-116
 Identities = 39/60 (65%), Positives = 47/60 (78%)
 Frame = +2

Query: 254 GKLFAQAGDYDGIRYVFQEMKAAAVEPDLFLYNTLFEALIKANKPGLAKGLFGSMISSGI 433
           GK+F +AGDYDGIRYV QEMK+  V+P+L +YNTL EA+ KA KPG A+ LF  MI SGI
Sbjct: 302 GKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGI 361



 Score = 57.8 bits (138), Expect = 6e-06
 Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
 Frame = +1

Query: 1   TTPSVLTLQRHKCSSSSFSPHIKHLRCL---INNLNISAQSHFFQI-LENYPCSITRDDA 168
           T   VL+ QRHK SS S++P ++  +     +NN ++S+    F + LE  P S+TR +A
Sbjct: 101 TKRPVLSHQRHKRSSVSYNPQLREFQRFAQRLNNCDVSSSDEEFMVCLEEIPSSLTRGNA 160

Query: 169 LLFLNSLKSWQKT 207
           LL LNSL+ WQKT
Sbjct: 161 LLVLNSLRPWQKT 173


>ref|XP_002863397.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297309232|gb|EFH39656.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 711

 Score =  364 bits (935), Expect(2) = e-115
 Identities = 175/297 (58%), Positives = 225/297 (75%), Gaps = 1/297 (0%)
 Frame = +1

Query: 427  GDSTNEKTLTALVRIYGRARWAKDALELWNKMRSNEWQVDYILYNTLLSMCADLGLEEEA 606
            G + NEKTLTALV+IYG+ARWAKDAL+LW +M++ +W +D+ILYNTLL+MCAD+GLEEEA
Sbjct: 356  GLTPNEKTLTALVKIYGKARWAKDALQLWEEMKAKKWPMDFILYNTLLNMCADIGLEEEA 415

Query: 607  KILFQDMKKSEKCKPDSWSYTAMLNIYGSGGDAEKAMHLFDEMSELNVELNVMGCTCLIQ 786
            + LF DMK+S +CKPD++SYTAMLNIYGSGG AEKAM LF+EM E  V++NVMGCTCL+Q
Sbjct: 416  ERLFNDMKESVQCKPDNFSYTAMLNIYGSGGKAEKAMKLFEEMLEAGVQVNVMGCTCLVQ 475

Query: 787  CLGKVRRIDDLVKVFRVSIIDRQIKPDDRLCGCLLSVVSYCE-GEHLDKVLTCLQEAXXX 963
            CLGK +RIDDLV VF +S I R +KPDDRLCGCLLSV++ CE  E  +KV+ CL+ A   
Sbjct: 476  CLGKAKRIDDLVYVFDLS-IQRGVKPDDRLCGCLLSVMALCESSEDAEKVMACLERANRK 534

Query: 964  XXXXXXXXXNDKTDINTLDTEFREILSDTSVDSRRPFCNCLIDICRNRNLHKRSHXXXXX 1143
                     ++KT+  T+  EF+ +++ T V++RRPFCNCLIDICR +  H+R+H     
Sbjct: 535  LVTFVNLIVDEKTEFETVKEEFKLVINATQVEARRPFCNCLIDICRGKKRHERAHELLYL 594

Query: 1144 XXXXXXXSGVHTKTAEEWRLNVRSLSVGAAHTALEDWMSKLIKLVRDEETLPELFSA 1314
                    G+H KT +EW L+VRSLSVGAA TALE+WM  L  +++ +E LPELF A
Sbjct: 595  GTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIKRQEDLPELFLA 651



 Score = 80.5 bits (197), Expect(2) = e-115
 Identities = 35/60 (58%), Positives = 48/60 (80%)
 Frame = +2

Query: 254 GKLFAQAGDYDGIRYVFQEMKAAAVEPDLFLYNTLFEALIKANKPGLAKGLFGSMISSGI 433
           GK+F +AGDYDGIRYV QEMK+  V+P++ +YNTL EA+ +A KPGLA+ LF  M+ +G+
Sbjct: 298 GKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGL 357



 Score = 62.0 bits (149), Expect = 3e-07
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
 Frame = +1

Query: 10  SVLTLQRHKCSSSSFSPHIKHLRCL---INNLNISAQSHFFQILENYPCSITRDDALLFL 180
           SVL+LQR K S+ S++P IK LR     +N+ N + +S F  +L+  P    RD+ALL L
Sbjct: 101 SVLSLQRQKRSAYSYNPQIKDLRAFAQKLNSSNFTEKSEFLSLLDEIPHPPDRDNALLVL 160

Query: 181 NSLKSWQKT 207
           NSL+ WQKT
Sbjct: 161 NSLREWQKT 169



 Score = 60.1 bits (144), Expect = 1e-06
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
 Frame = +1

Query: 388 WFSKRVVWKHD*F--GDSTNEKTLTALVRIYGRARWAKDALELWNKMRSNEWQVDYILYN 561
           ++ K + W    +  G   +E T +A++ +Y + R  ++ L L+ +  +  W+ D I ++
Sbjct: 236 FYDKAIEWFERMYKTGLMPDEVTYSAILDVYSKLRKVEEVLSLYERAVATGWKPDAIAFS 295

Query: 562 TLLSMCADLGLEEEAKILFQDMKKSEKCKPDSWSYTAMLNIYGSGGDAEKAMHLFDEMSE 741
            L  M  + G  +  + + Q+MK  +  KP+   Y  +L   G  G    A  LF+EM E
Sbjct: 296 VLGKMFGEAGDYDGIRYVLQEMKSMD-VKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLE 354

Query: 742 LNVELNVMGCTCLIQCLGKVRRIDDLVKVF 831
             +  N    T L++  GK R   D ++++
Sbjct: 355 AGLTPNEKTLTALVKIYGKARWAKDALQLW 384