BLASTX nr result
ID: Bupleurum21_contig00016812
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00016812
(1351 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 231 4e-58
ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|2... 218 2e-54
ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2... 213 1e-52
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 197 7e-48
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 197 7e-48
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 231 bits (588), Expect = 4e-58
Identities = 150/450 (33%), Positives = 223/450 (49%), Gaps = 17/450 (3%)
Frame = +1
Query: 31 RSINSNF-SWKF--NYDFHYNGRLWFGWDPNSWCVNNTFCSA--QSMVCRVQRKNSSEFF 195
RS+ S+F WK NY+F GR+W WDP V T S Q++ C V+ + S F
Sbjct: 47 RSLLSSFPGWKSVCNYEFAALGRIWVVWDP---AVEVTVLSKSDQTISCTVKLPHISTEF 103
Query: 196 QLVGVYGTNTDLERRNLWAELSALDLTI-----PTIVCGDFNVRLDPSETLGGNIRWTNG 360
+ VY N RR LW+EL L P I+ GDFN LDP + G R T G
Sbjct: 104 VVTFVYAVNCRYGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRG 163
Query: 361 IREFKSCIEDMGLTDLNCSGEKLTWWNSCNANPIYRKLDRVLVSSTWLVSYPMSHAHFQV 540
+ EF+ C+ ++DL G TWWN+ NPI +K+DR+LV+ +WL++ P+S+ F
Sbjct: 164 MEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCA 223
Query: 541 RGLSDHCPALITMGVEWEKRRKPFQLFMHLMDNSNFMPLIREAWD-ISLTGDPWYVLTTK 717
SDHCP+ + + + R KPF+L LM + F+ IR WD ++ G + L+ K
Sbjct: 224 MEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKK 283
Query: 718 LRRVKIAMITLNKS-VGNVHSRVKAARDSLQNFQENLSPPHSESDICIERDLSFKYQKAL 894
+ +K + T N+ + RV A +L+ Q NL S +E++ + +
Sbjct: 284 SKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAELA 343
Query: 895 NNEECLQHQKSRIGWLNKGDSNNGFFYKQCINRWNSNKIVVLKXXXXXXXXXXSDIANVA 1074
EE QKSR+ WL GDSN FF++ R N+I L ++
Sbjct: 344 LAEERFLCQKSRVLWLKCGDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHC 403
Query: 1075 VNYFETKMGVSS---AIDVLPDDISLPIVPLDK--RQMLAADVSEVEILNTLKGMKKGKC 1239
V++F+ G SS + + + SL D+ RQ+L A+VSE +I + + K
Sbjct: 404 VDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKS 463
Query: 1240 PGPDGFQPEFYLATWSITGSDFVKGIKFFF 1329
PGPDG+ EF+ TWSI G + ++ FF
Sbjct: 464 PGPDGYTSEFFKKTWSIVGPSLIAAVQEFF 493
>ref|XP_002331746.1| predicted protein [Populus trichocarpa] gi|222874272|gb|EEF11403.1|
predicted protein [Populus trichocarpa]
Length = 503
Score = 218 bits (556), Expect = 2e-54
Identities = 135/457 (29%), Positives = 217/457 (47%), Gaps = 9/457 (1%)
Frame = +1
Query: 1 VPQNNATKIARSINSNFSWKFNYDFHYNGRLWFGWDPNSWCVNNTFCSAQSMVCRVQRKN 180
V N +++ + ++S+ +NYDF GR+W W+ ++ VN S Q++ V
Sbjct: 23 VKDKNKDNVSQLLLRSWSFLYNYDFSCRGRIWVCWNADTVKVNVFGMSDQAIHVSVTILA 82
Query: 181 SSEFFQLVGVYGTNTDLERRNLWAELSALD---LTIPTIVCGDFNVRLDPSETLGGNIRW 351
++ F +YG N R LW+++ + + P I+ GDFN + S LGG+ W
Sbjct: 83 TNISFNTSIIYGDNNASLREALWSDIVSRSDGWESTPWILMGDFNAIRNQSHRLGGSTTW 142
Query: 352 TNGIREFKSCIEDMGLTDLNCSGEKLTWWNSCNANPIYRKLDRVLVSSTWLVSYPMSHAH 531
+ +CI + + DL SG TW N C N I RKLDRVLV+ W +++P+S
Sbjct: 143 AGTMDRLDTCIREAKVDDLRYSGMHYTWSNQCPENLIMRKLDRVLVNEKWNLNFPLSEVR 202
Query: 532 FQVRGLSDHCPALITMGVEWEKRRKPFQLFMHLMDNSNFMPLIREAWDISLTGDPWYVLT 711
F G+SDH P ++ + + +KPF+ F MD ++ G P Y L
Sbjct: 203 FLPSGISDHSPMVVKVIGNDQNIKKPFRFFDMWMDQNS-------------GGCPMYQLC 249
Query: 712 TKLRRVKIAMITLNKS-VGNVHSRVKAARDSLQNFQENLSPPHSESDICI-ERDLSFKYQ 885
L+++K + N + N+ RVK A++ + Q+ L H +C+ ERD+ KY
Sbjct: 250 CNLKKLKQELKLFNMAHFSNISDRVKDAKNEMDKAQQALHTAHENPILCMRERDVVHKYA 309
Query: 886 KALNNEECLQHQKSRIGWLNKGDSNNGFFYKQCINRWNSNKIVVLKXXXXXXXXXXSDIA 1065
+ EE QK+RI WL+ GD N +F+K R N NK++ L +
Sbjct: 310 STVRAEESFFKQKARIQWLSLGDQNTSYFHKSVNGRHNRNKLLSLTREDGEVVEGHEAVK 369
Query: 1066 NVAVNYFETKMGVSSAIDVLPDDISLPIVPL----DKRQMLAADVSEVEILNTLKGMKKG 1233
+ + YF +GV VL +++ + L ++ +LA V+ EI + + +K
Sbjct: 370 SEVIAYFHRVLGVDQMPRVLNEEVMESAINLKLSSTQQHVLAQVVTRKEIKHAMFSLKNN 429
Query: 1234 KCPGPDGFQPEFYLATWSITGSDFVKGIKFFFDTLYM 1344
K PG DGF F+ W I G D + ++ F T M
Sbjct: 430 KAPGLDGFNAGFFKRMWHIVGEDVINAVRSLFQTRRM 466
>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
predicted protein [Populus trichocarpa]
Length = 819
Score = 213 bits (541), Expect = 1e-52
Identities = 123/384 (32%), Positives = 197/384 (51%), Gaps = 5/384 (1%)
Frame = +1
Query: 1 VPQNNATKIARSINSNFSWKFNYDFHYNGRLWFGWDPNSWCVNNTFCSAQSMVCRVQRKN 180
V N +++ + ++S+ +NYDF GR+W W+ ++ V+ S Q++ V
Sbjct: 416 VKDKNKDNVSQLLLRSWSFLYNYDFSCRGRIWVCWNADTVKVDVFGMSDQAIHVSVTILA 475
Query: 181 SSEFFQLVGVYGTNTDLERRNLWAEL-SALDLTIPT--IVCGDFNVRLDPSETLGGNIRW 351
++ F +YG N R LW+++ S D T I+ GDFN + S+ LGG+ W
Sbjct: 476 TNISFNTSIIYGDNNASLREALWSDIVSRSDGWESTLWILIGDFNAIRNQSDRLGGSTTW 535
Query: 352 TNGIREFKSCIEDMGLTDLNCSGEKLTWWNSCNANPIYRKLDRVLVSSTWLVSYPMSHAH 531
+ +CI + + DL SG TW N C N I RKLDRVLV+ W + +P+S A
Sbjct: 536 AGTMDRLDTCIREAKVDDLRYSGMHYTWSNQCPENLIMRKLDRVLVNEKWNLKFPLSEAR 595
Query: 532 FQVRGLSDHCPALITMGVEWEKRRKPFQLFMHLMDNSNFMPLIREAWDISLTGDPWYVLT 711
F G+SDH P ++ + + ++KPF+ F MD+ FMPL+++ WD + G P Y L
Sbjct: 596 FLPSGMSDHSPMVVKVIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQNSRGCPMYQLC 655
Query: 712 TKLRRVKIAMITLNKS-VGNVHSRVKAARDSLQNFQENLSPPHSESDICI-ERDLSFKYQ 885
KLR++K + N + N+ RV+ A++ + Q+ L H +C+ ERD+ KY
Sbjct: 656 CKLRKLKQELKLFNMAHFSNISDRVRDAKNKMDKAQQALHTAHENPILCMRERDVVHKYA 715
Query: 886 KALNNEECLQHQKSRIGWLNKGDSNNGFFYKQCINRWNSNKIVVLKXXXXXXXXXXSDIA 1065
+ EE QK+RI WL+ GD N +F+K R N NK++ L +
Sbjct: 716 STVRAEESFFKQKARIQWLSLGDQNTSYFHKSVNGRQNRNKLLSLTREDGEVVERQEAVK 775
Query: 1066 NVAVNYFETKMGVSSAIDVLPDDI 1137
+ ++YF +GV VL +++
Sbjct: 776 SEVISYFHRVLGVDQMPRVLNEEV 799
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 197 bits (500), Expect = 7e-48
Identities = 130/458 (28%), Positives = 218/458 (47%), Gaps = 15/458 (3%)
Frame = +1
Query: 1 VPQNNATKIARSINSNFSWKFNYDFHYNGRLWFGWDPNSWCVNNTFCSAQSMVCRVQRKN 180
V Q K ++ +S+ NY+F G++W WDP+ V S Q + C + +
Sbjct: 41 VKQPKEKKFISNLLPGWSFVENYEFSVLGKIWVLWDPSVKVVV-IGRSLQMITCELLLPD 99
Query: 181 SSEFFQLVGVYGTNTDLERRNLWAELSALDLTIPT-----IVCGDFNVRLDPSETLGGNI 345
S +F + VY +N + R+ LW EL L L+ IV GDFN L+P + NI
Sbjct: 100 SPSWFVVSIVYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAINANI 159
Query: 346 RWTNGIREFKSCIEDMGLTDLNCSGEKLTWWNSCNANPIYRKLDRVLVSSTWLVSYPMSH 525
IR F+SC+ D L DL G TWWN C++ P+ +K+DR+LV+ W +P ++
Sbjct: 160 G--RKIRAFRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAY 217
Query: 526 AHFQVRGLSDHCPALITMGVEWEKRRKPFQLFMHLMDNSNFMPLIREAW-DISLTGDPWY 702
A+F SDH + + K ++PF+ F + + N +F+ LIRE W +++G Y
Sbjct: 218 ANFGEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMY 277
Query: 703 VLTTKLRRVKIAMITLNK-SVGNVHSRVKAARDSLQNFQENLSPPHSESDICIERDLSFK 879
++ KL+ +K+ + ++ + ++ RV A + + Q S +E + + K
Sbjct: 278 RVSKKLKHLKLPICCFSRENYSDIEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATRK 337
Query: 880 YQKALNNEECLQHQKSRIGWLNKGDSNNGFFYKQCINRWNSNKIVVL----KXXXXXXXX 1047
+Q EE QKS I WL +GD+N +F+K R + N I L
Sbjct: 338 WQILAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQG 397
Query: 1048 XXSDIANVAVNYFETKM-GVSSAIDVLPDDISLPI---VPLDKRQMLAADVSEVEILNTL 1215
I + N+FE+ + GV + D++L + +D+ L S+++I
Sbjct: 398 IKEGIKEHSCNFFESLLCGVEGENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAF 457
Query: 1216 KGMKKGKCPGPDGFQPEFYLATWSITGSDFVKGIKFFF 1329
+ + K GPDG+ EF+ W + G + + ++ FF
Sbjct: 458 FSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFF 495
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 197 bits (500), Expect = 7e-48
Identities = 130/458 (28%), Positives = 218/458 (47%), Gaps = 15/458 (3%)
Frame = +1
Query: 1 VPQNNATKIARSINSNFSWKFNYDFHYNGRLWFGWDPNSWCVNNTFCSAQSMVCRVQRKN 180
V Q K ++ +S+ NY+F G++W WDP+ V S Q + C + +
Sbjct: 41 VKQPKEKKFISNLLPGWSFVENYEFSVLGKIWVLWDPSVKVVV-IGRSLQMITCELLLPD 99
Query: 181 SSEFFQLVGVYGTNTDLERRNLWAELSALDLTIPT-----IVCGDFNVRLDPSETLGGNI 345
S +F + VY +N + R+ LW EL L L+ IV GDFN L+P + NI
Sbjct: 100 SPSWFVVSIVYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNPESAINANI 159
Query: 346 RWTNGIREFKSCIEDMGLTDLNCSGEKLTWWNSCNANPIYRKLDRVLVSSTWLVSYPMSH 525
IR F+SC+ D L DL G TWWN C++ P+ +K+DR+LV+ W +P ++
Sbjct: 160 G--RKIRAFRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAY 217
Query: 526 AHFQVRGLSDHCPALITMGVEWEKRRKPFQLFMHLMDNSNFMPLIREAW-DISLTGDPWY 702
A+F SDH + + K ++PF+ F + + N +F+ LIRE W +++G Y
Sbjct: 218 ANFGEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHNPDFLQLIRENWYSCNVSGSAMY 277
Query: 703 VLTTKLRRVKIAMITLNK-SVGNVHSRVKAARDSLQNFQENLSPPHSESDICIERDLSFK 879
++ KL+ +K+ + ++ + ++ RV A + + Q S +E + + K
Sbjct: 278 RVSKKLKHLKLPICCFSRENYSDIEKRVSEAHAIVLHRQRITLTNPSVVHATLELEATRK 337
Query: 880 YQKALNNEECLQHQKSRIGWLNKGDSNNGFFYKQCINRWNSNKIVVL----KXXXXXXXX 1047
+Q EE QKS I WL +GD+N +F+K R + N I L
Sbjct: 338 WQILAKAEESFFCQKSSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQG 397
Query: 1048 XXSDIANVAVNYFETKM-GVSSAIDVLPDDISLPI---VPLDKRQMLAADVSEVEILNTL 1215
I + N+FE+ + GV + D++L + +D+ L S+++I
Sbjct: 398 IKEGIKEHSCNFFESLLCGVEGENSLAQSDMNLLLSFRCSVDQINDLERSFSDLDIQEAF 457
Query: 1216 KGMKKGKCPGPDGFQPEFYLATWSITGSDFVKGIKFFF 1329
+ + K GPDG+ EF+ W + G + + ++ FF
Sbjct: 458 FSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEFF 495