BLASTX nr result
ID: Bupleurum21_contig00016681
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00016681
(706 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002523201.1| conserved hypothetical protein [Ricinus comm... 248 1e-72
ref|XP_004141524.1| PREDICTED: cleavage and polyadenylation spec... 243 1e-69
ref|XP_004156192.1| PREDICTED: cleavage and polyadenylation spec... 243 1e-69
ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation spec... 250 6e-69
ref|XP_002300333.1| predicted protein [Populus trichocarpa] gi|2... 237 1e-68
>ref|XP_002523201.1| conserved hypothetical protein [Ricinus communis]
gi|223537608|gb|EEF39232.1| conserved hypothetical
protein [Ricinus communis]
Length = 702
Score = 248 bits (632), Expect(2) = 1e-72
Identities = 107/131 (81%), Positives = 117/131 (89%)
Frame = +1
Query: 313 RSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIK 492
RS+RQTVCRHWLRSLCMKG+ACGFLHQYDKSRMP+CRFFRLYGECREQDCVYKHTNEDIK
Sbjct: 71 RSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIK 130
Query: 493 ECNMYKLGFCPNGPDCRYRHAKMPGPPPSVEEVLQKIQHLTSYNYNNSNRFYQNRNPNYT 672
ECNMYKLGFCPNGPDCRYRHAK+PGPPP VEEVLQKIQ L SYNY +SN+F+Q R +
Sbjct: 131 ECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLNSYNYGSSNKFFQQRGAGFQ 190
Query: 673 QPAERPQVPMG 705
Q A++ Q G
Sbjct: 191 QHADKSQFSQG 201
Score = 52.0 bits (123), Expect(2) = 1e-72
Identities = 24/31 (77%), Positives = 27/31 (87%), Gaps = 1/31 (3%)
Frame = +3
Query: 105 MDDGEGGLNFDFEGGLD-SGPTQPTASVPVI 194
MDD +GGL+FDFEGGLD SGPT PTAS+P I
Sbjct: 1 MDDTDGGLSFDFEGGLDSSGPTNPTASIPAI 31
>ref|XP_004141524.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Cucumis sativus]
Length = 707
Score = 243 bits (619), Expect(2) = 1e-69
Identities = 105/129 (81%), Positives = 114/129 (88%)
Frame = +1
Query: 313 RSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIK 492
RS+RQTVCRHWLRSLCMKG+ACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIK
Sbjct: 73 RSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIK 132
Query: 493 ECNMYKLGFCPNGPDCRYRHAKMPGPPPSVEEVLQKIQHLTSYNYNNSNRFYQNRNPNYT 672
ECNMYK GFCPNGPDCRYRHAK+PGPPP +EE+LQKIQHL SYNY SN+F+ R +
Sbjct: 133 ECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPSNKFFTQRGVGLS 192
Query: 673 QPAERPQVP 699
Q E+ Q P
Sbjct: 193 QQNEKSQFP 201
Score = 47.0 bits (110), Expect(2) = 1e-69
Identities = 21/33 (63%), Positives = 28/33 (84%), Gaps = 2/33 (6%)
Frame = +3
Query: 105 MDDGEGGLNFDFEGGLDSGPTQP--TASVPVIH 197
M+D EG L+FDFEGGLD+GPT P T+S+P+I+
Sbjct: 1 MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIIN 33
>ref|XP_004156192.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Cucumis sativus]
Length = 379
Score = 243 bits (619), Expect(2) = 1e-69
Identities = 105/129 (81%), Positives = 114/129 (88%)
Frame = +1
Query: 313 RSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIK 492
RS+RQTVCRHWLRSLCMKG+ACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIK
Sbjct: 73 RSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIK 132
Query: 493 ECNMYKLGFCPNGPDCRYRHAKMPGPPPSVEEVLQKIQHLTSYNYNNSNRFYQNRNPNYT 672
ECNMYK GFCPNGPDCRYRHAK+PGPPP +EE+LQKIQHL SYNY SN+F+ R +
Sbjct: 133 ECNMYKFGFCPNGPDCRYRHAKLPGPPPPLEEILQKIQHLGSYNYGPSNKFFPQRGVGLS 192
Query: 673 QPAERPQVP 699
Q E+ Q P
Sbjct: 193 QQNEKSQFP 201
Score = 47.0 bits (110), Expect(2) = 1e-69
Identities = 21/33 (63%), Positives = 28/33 (84%), Gaps = 2/33 (6%)
Frame = +3
Query: 105 MDDGEGGLNFDFEGGLDSGPTQP--TASVPVIH 197
M+D EG L+FDFEGGLD+GPT P T+S+P+I+
Sbjct: 1 MEDSEGVLSFDFEGGLDAGPTNPAATSSLPIIN 33
>ref|XP_002281594.1| PREDICTED: cleavage and polyadenylation specificity factor
CPSF30-like [Vitis vinifera]
Length = 673
Score = 250 bits (638), Expect(2) = 6e-69
Identities = 109/131 (83%), Positives = 120/131 (91%)
Frame = +1
Query: 313 RSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIK 492
RS+RQTVCRHWLRSLCMKG+ACGFLHQYDKSRMP+CRFFRLYGECREQDCVYKHTNEDIK
Sbjct: 58 RSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIK 117
Query: 493 ECNMYKLGFCPNGPDCRYRHAKMPGPPPSVEEVLQKIQHLTSYNYNNSNRFYQNRNPNYT 672
ECNMYKLGFCPNG DCRYRHAK+PGPPP++EEV QKIQ L+S+NY +SNRFYQNRNP Y
Sbjct: 118 ECNMYKLGFCPNGSDCRYRHAKLPGPPPTMEEVFQKIQQLSSFNYGSSNRFYQNRNP-YN 176
Query: 673 QPAERPQVPMG 705
Q E+ Q+ G
Sbjct: 177 QQTEKSQILQG 187
Score = 37.4 bits (85), Expect(2) = 6e-69
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 105 MDDGEGGLNFDFEGGLDSGPTQPTASVPVI 194
M+D EG L+FDFEGGLD+ P P+I
Sbjct: 1 MEDAEGVLSFDFEGGLDAAPGTAATVAPLI 30
>ref|XP_002300333.1| predicted protein [Populus trichocarpa] gi|222847591|gb|EEE85138.1|
predicted protein [Populus trichocarpa]
Length = 669
Score = 237 bits (605), Expect(2) = 1e-68
Identities = 103/125 (82%), Positives = 113/125 (90%)
Frame = +1
Query: 313 RSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPICRFFRLYGECREQDCVYKHTNEDIK 492
RS+RQTVCRHWLRSLCMKG+ACGFLHQYDKSRMP+CRFFRLYGECREQDCVYKHTNEDIK
Sbjct: 68 RSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIK 127
Query: 493 ECNMYKLGFCPNGPDCRYRHAKMPGPPPSVEEVLQKIQHLTSYNYNNSNRFYQNRNPNYT 672
ECNMYKLGFCPNGPDCRYRHAK+PGPPP VEEV+QKIQ L SYN SN+ +Q RN ++
Sbjct: 128 ECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVVQKIQQLNSYNGVTSNKNFQQRNAGFS 187
Query: 673 QPAER 687
Q E+
Sbjct: 188 QQIEK 192
Score = 49.3 bits (116), Expect(2) = 1e-68
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +3
Query: 105 MDDGEGGLNFDFEGGLDSGPTQPTASVPVI 194
M+D EG L+FDFEGGLDSGP P AS+P I
Sbjct: 1 MEDSEGVLSFDFEGGLDSGPANPIASIPAI 30