BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00015969
         (1353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III s...   322   1e-85
emb|CBI17549.3| unnamed protein product [Vitis vinifera]              315   2e-83
gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]       310   7e-82
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2...   301   3e-79
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...   300   4e-79

>ref|XP_002268044.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC5 [Vitis
            vinifera]
          Length = 672

 Score =  322 bits (826), Expect = 1e-85
 Identities = 194/417 (46%), Positives = 261/417 (62%), Gaps = 29/417 (6%)
 Frame = -1

Query: 1170 MDLDEFDGVSHAPSGH-SRFAPKNSRFXXXXXXXXXKL----ELNSSSILPTAKEDSAVP 1006
            MDLD+ DG + AP    SRFAPK+S+                +L+  +++   +EDS  P
Sbjct: 1    MDLDDLDGPNRAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEEDSQPP 60

Query: 1005 LIVASDSGEIANVEMQSLCTYASNRDN-IVKMDTDLKIEDNQTKGDLMKEGNHKDEDPVV 829
            L+  +D              +AS+  N +++M+ + K E      D M+E + +DEDPVV
Sbjct: 61   LVKKADE------------PFASSTQNGVIEMEVEAKAEVE----DAMEEDD-RDEDPVV 103

Query: 828  RDIDVFFTPS-VGPNTLLYVMQYPLKPIWRPYELDGQCEEVRVKPASSEVAIDLLV---- 664
            R+IDVFFTP     NT +YV+QYPL+P WRPYEL  +C+EVRVKPAS+EV +DL +    
Sbjct: 104  REIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDS 163

Query: 663  ----PDSESGERMTKQVLSSSWVPYRS-GYAIGLLIGNKLYLNPVHAAAQFRPSMQHFVS 499
                PD+ + +RM KQ LS+SW P ++ GY +G+L+GNKL+LNP+HA  Q RPSM++  S
Sbjct: 164  KNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSS 223

Query: 498  EELGKKNILSHDGG------VLAEEKSCGA-SNQEWIHLKYHSSNSNASDKYLHKMVAEE 340
                +KN ++ D        V  EE+S G+   Q W+ LKYHSS S+ S +YL KMVAE+
Sbjct: 224  GGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQSWVPLKYHSSESDFSARYLQKMVAED 283

Query: 339  GSEIEFAMSSSDYIDSLCP----GPTDRPGGPSRRYLLSLPLEDRLKMYLCKVAPVHRFD 172
             S I+F MS  +Y++SLCP       +R  G SRR+LLS+PLE+R K  LC+  PVHRF 
Sbjct: 284  NSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEERFKTLLCEGPPVHRFS 343

Query: 171  VLKYLAPSDSVADLLEVLKKLCYLVQGLWVPKSSLL--KLQGLEALARDYTLYLFSK 7
             LK+ AP +SV D+L VL K  +LVQGLWVPKSSLL    QG+  LARDY L LFSK
Sbjct: 344  ALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVAPLARDYILLLFSK 400


>emb|CBI17549.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  315 bits (806), Expect = 2e-83
 Identities = 193/433 (44%), Positives = 262/433 (60%), Gaps = 45/433 (10%)
 Frame = -1

Query: 1170 MDLDEFDGVSHAPSGH-SRFAPKNSRFXXXXXXXXXKL----ELNSSSILPTAKEDSAVP 1006
            MDLD+ DG + AP    SRFAPK+S+                +L+  +++   +EDS  P
Sbjct: 1    MDLDDLDGPNRAPVRRPSRFAPKSSKPKLIPKPEPSSQPEPSKLDDVTLINKKEEDSQPP 60

Query: 1005 LIVASDSGEIANVEMQSLCTYASNRDN-IVKMDTDLKIEDNQTKGDLMKEGNHKDEDPVV 829
            L+  +D              +AS+  N +++M+ + K E      D M+E + +DEDPVV
Sbjct: 61   LVKKADE------------PFASSTQNGVIEMEVEAKAEVE----DAMEEDD-RDEDPVV 103

Query: 828  RDIDVFFTPS-VGPNTLLYVMQYPLKPIWRPYELDGQCEEVRVKPASSEVAIDLLV---- 664
            R+IDVFFTP     NT +YV+QYPL+P WRPYEL  +C+EVRVKPAS+EV +DL +    
Sbjct: 104  REIDVFFTPPPTDDNTKIYVLQYPLRPYWRPYELGERCDEVRVKPASAEVEVDLSIDVDS 163

Query: 663  ----PDSESGERMTKQVLSSSWVPYRS-GYAIGLLIGNKLYLNPVHAAAQFRPSMQHFVS 499
                PD+ + +RM KQ LS+SW P ++ GY +G+L+GNKL+LNP+HA  Q RPSM++  S
Sbjct: 164  KNYDPDAPNAQRMKKQTLSTSWKPPQTTGYVVGVLMGNKLHLNPIHAVVQLRPSMEYLSS 223

Query: 498  EELGKKNILSHDGG------VLAEEKSCGASNQE-----------------WIHLKYHSS 388
                +KN ++ D        V  EE+S G+  ++                 W+ LKYHSS
Sbjct: 224  GGAKRKNNVTGDTNSAVKLEVSNEEESVGSLKKQNKIMGILDEQNTDAAESWVPLKYHSS 283

Query: 387  NSNASDKYLHKMVAEEGSEIEFAMSSSDYIDSLCP----GPTDRPGGPSRRYLLSLPLED 220
             S+ S +YL KMVAE+ S I+F MS  +Y++SLCP       +R  G SRR+LLS+PLE+
Sbjct: 284  ESDFSARYLQKMVAEDNSPIQFLMSPYEYVNSLCPPGVSNDDNRSKGLSRRFLLSMPLEE 343

Query: 219  RLKMYLCKVAPVHRFDVLKYLAPSDSVADLLEVLKKLCYLVQGLWVPKSSLL--KLQGLE 46
            R K  LC+  PVHRF  LK+ AP +SV D+L VL K  +LVQGLWVPKSSLL    QG+ 
Sbjct: 344  RFKTLLCEGPPVHRFSALKHFAPDNSVEDVLGVLTKHAHLVQGLWVPKSSLLFPGGQGVA 403

Query: 45   ALARDYTLYLFSK 7
             LARDY L LFSK
Sbjct: 404  PLARDYILLLFSK 416


>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
          Length = 643

 Score =  310 bits (793), Expect = 7e-82
 Identities = 185/423 (43%), Positives = 257/423 (60%), Gaps = 34/423 (8%)
 Frame = -1

Query: 1170 MDLDEFDGVSHAPSGHSRFAPKNSRFXXXXXXXXXKLELNSSSILPTAKEDSAVPLIVAS 991
            MD D+ D  S AP+  SRFAPK S+F          +   S+SI    + DS  P+   +
Sbjct: 1    MDFDDLDEPSQAPTRPSRFAPKGSKFKPRTEP----VAATSNSIAKKEELDSK-PVSPIN 55

Query: 990  DSGEIANVEMQSLCTYASNRDNIVKMDTDLKIEDN--QTKGDLMKEGNHKDEDPVVRDID 817
             S   A  + +   + + ++   V MD D K+E+   Q K + M E   + ED +VR+ID
Sbjct: 56   SSTTAAAGKAEDAASASVSQS--VAMDVDAKVEEEAEQPKDEPM-ESREEGEDEIVREID 112

Query: 816  VFFTPSVGPNTLLYVMQYPLKPIWRPYELDGQCEEVRVKPASSEVAIDLLVP------DS 655
            V+ TPS+ PNT LYV+QYPL+P+WRPYELD +CEEVRVK  S+EV +DL V       DS
Sbjct: 113  VYLTPSIDPNTKLYVLQYPLRPLWRPYELDDRCEEVRVKCKSAEVEVDLAVDVDSKNYDS 172

Query: 654  ESGER--MTKQVLSSSW-VPYRSGYAIGLLIGNKLYLNPVHAAAQFRPSMQHFVSEELGK 484
            ++  R  MTKQ L+SSW  P  +GYA+G+L+GNKL+LNP+HA  Q RPSMQH+  E   +
Sbjct: 173  DADPRVSMTKQTLTSSWKPPVTAGYAVGVLVGNKLHLNPIHAVVQLRPSMQHYKPESSKR 232

Query: 483  KNILSH--DGGVLAEEKSCGA-----------------SNQEWIHLKYHSSNSNASDKYL 361
            +   S   +     EE + G+                 + ++WI L YH + S+ S  Y+
Sbjct: 233  RTTASSNLEDNTKGEEVTTGSLKKQGKPSGPVIEQNKDTREDWIPLNYHGARSDISMSYV 292

Query: 360  HKMVAEEGSEIEFAMSSSDYIDSLCPGPTDRPGGPS--RRYLLSLPLEDRLKMYLCKVAP 187
             KMV  + S I+F+M + DY+++LCPG ++   G +   R LLSLPLE+R + +L +  P
Sbjct: 293  RKMVEHDSSHIQFSM-NHDYVNTLCPGTSNENNGSNGPSRVLLSLPLEERFRTWLLQGPP 351

Query: 186  VHRFDVLKYLAPSDSVADLLEVLKKLCYLVQGLWVPKSSLL--KLQGLEALARDYTLYLF 13
            +HRFD LK+LAP  SV D+L VL +   LVQGLW+PKSSLL  K QG++ALARDY L LF
Sbjct: 352  IHRFDALKHLAPDASVEDILAVLSQHAQLVQGLWIPKSSLLYGKDQGIDALARDYVLLLF 411

Query: 12   SKS 4
            S++
Sbjct: 412  SRT 414


>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
            predicted protein [Populus trichocarpa]
          Length = 667

 Score =  301 bits (770), Expect = 3e-79
 Identities = 194/424 (45%), Positives = 247/424 (58%), Gaps = 35/424 (8%)
 Frame = -1

Query: 1170 MDLDEFDGVSHAPSGHSRFAPKNSRFXXXXXXXXXKLELNSSSILPTAKEDSAVPLIVAS 991
            MDLD  D  S      SRFAP + +               S  + P  K D +V    A 
Sbjct: 1    MDLDGLDEPSKVRKPPSRFAPTSKKPQPKSKPKPKPEPQESVPVAP--KPDPSVSN-TAE 57

Query: 990  DSGEIANVEMQSLCTYASNRDNIVKMDTDLKIEDNQT--KGDLMKEGNHKDEDPVV-RDI 820
            D+    +  +    T  SN +  VKM+ D K E      + DLM     +DED VV R+I
Sbjct: 58   DAKPKIDDTLSKTETGVSNGN--VKMEIDAKEERGAAVKENDLMDVDKEEDEDDVVVREI 115

Query: 819  DVFFTPSVGPNTLLYVMQYPLKPIWRPYELDGQCEEVRVKPASSEVAIDLLV-------P 661
            DV++TPSV PNT LYVMQYPL+P WRPYELD +C+EVRVKP S+EV +DL +       P
Sbjct: 116  DVYYTPSVDPNTQLYVMQYPLRPCWRPYELDERCKEVRVKPESTEVEVDLSIDDTKNYDP 175

Query: 660  DSESGERMTKQVLSSSW-VPYRSGYAIGLLIGNKLYLNPVHAAAQFRPSMQHFVS-EELG 487
            D  S   M KQ LSSSW  P  +GYA+G+LIGNKL+LNP+HA  Q RPSM +  S    G
Sbjct: 176  DIASRLNMKKQTLSSSWSPPPATGYAVGVLIGNKLHLNPIHAVVQLRPSMDYLSSGNSKG 235

Query: 486  KKNIL----SHDGGVLA----EEKSCGASNQE-------WIHLKYHSSNSNASDKYLHKM 352
            KKN      S++G  L     + K   + N++       WI LKYH S S+ S +YL  M
Sbjct: 236  KKNATSGEDSNEGKPLGLPKKQSKQMSSGNEQKPDVEESWIPLKYHGSKSDLSSRYLQNM 295

Query: 351  VAEEGSEIEFAMSSSDYIDSLCPGPTD---RPGGPSRRYLLSLPLEDRLKMYLCKVAPVH 181
            VA E S IEFAM+  DY+ SLCPG ++   +  GPSRR LLSLPLE+R+K    +  P+H
Sbjct: 296  VAPESSTIEFAMNPYDYMSSLCPGISNNNIKLNGPSRRVLLSLPLEERIKRLFLEGPPIH 355

Query: 180  RFDVLKYLAPSDSVADLLEVLKKLCYLVQGLWVPKSSLL-----KLQGLEALARDYTLYL 16
            RF  L++L P+DS+ DLL VL++   LVQGLWVPK+SLL       + ++  ARDY L L
Sbjct: 356  RFAALRHLIPNDSIEDLLIVLQEYGQLVQGLWVPKTSLLFPNPKPTEKVKLAARDYILLL 415

Query: 15   FSKS 4
            FSKS
Sbjct: 416  FSKS 419


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
            gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
            putative [Ricinus communis]
          Length = 677

 Score =  300 bits (769), Expect = 4e-79
 Identities = 182/416 (43%), Positives = 257/416 (61%), Gaps = 29/416 (6%)
 Frame = -1

Query: 1164 LDEFDGVSHAPSGHSRFAPKNSRFXXXXXXXXXKL---ELNSSSILPTAKEDSAVPLIVA 994
            LD+ D  S  PS  S++APK+++F              +L SS+     +E    PL   
Sbjct: 4    LDDLDKPSQVPSRPSKYAPKSAKFKPQPKTKPNPKPDPQLPSSN--SELQEPQNAPLSKK 61

Query: 993  SDSGEIANVEMQSLCTYAS----NRDNIVKMDTDLKI-EDNQTKGDLMKEGNHKDEDPVV 829
            ++  E   ++ + + T  +    + +  VKM+ D  + ED + +G+  +E   ++ED +V
Sbjct: 62   NEDDEEEEIKPKIISTPKNEAWLSNNGAVKMEIDDSMDEDKREEGENEEE---EEEDMIV 118

Query: 828  RDIDVFFTPSVGPNTLLYVMQYPLKPIWRPYELDGQCEEVRVKPASSEVAIDLLVPDSES 649
            R+IDVFFTPS+   T LYVMQYPL+P WRPYELD +CEEVRVKP S+EV +DL + DS +
Sbjct: 119  REIDVFFTPSIDSATQLYVMQYPLRPCWRPYELDERCEEVRVKPQSTEVEVDLTIDDSSN 178

Query: 648  GE-------RMTKQVLSSSWVPYR-SGYAIGLLIGNKLYLNPVHAAAQFRPSMQHFVSEE 493
             +          KQ LS+S++P R +GYA+G+LIGNKL+LNP+HA  Q RPS++H  S +
Sbjct: 179  WDPAQASKYNFKKQTLSTSFMPPRVTGYAVGVLIGNKLHLNPIHAVVQLRPSLEHVNSND 238

Query: 492  LGKKNILSHDGGVLAEE----KSCGASNQE-WIHLKYHSSNSNASDKYLHKMVAEEGSEI 328
              +KN  + +  V  E+    K  G+S ++ WI LKYH S S+ S +YL KM+A+E S +
Sbjct: 239  SKRKNSATLNPEVKLEDSNEGKPIGSSKKQCWISLKYHGSKSDFSSRYLEKMIAQESSPM 298

Query: 327  EFAMSSSDYIDSLCPGPTD---RPGGPSRRYLLSLPLEDRLKMYLCKVAPVHRFDVLKYL 157
            EF M+  DY+ SLCP  ++   +  GP RR+LLSLPL +RLK  + +  PV RF VLK+ 
Sbjct: 299  EFTMTPYDYMSSLCPVASNEKTKSKGPPRRFLLSLPLAERLKKLILEGPPVQRFSVLKHF 358

Query: 156  APSDSVADLLEVLKKLCYLVQGLWVPKSSLL-----KLQGLEALARDYTLYLFSKS 4
            AP DSV D+L+VL++   LVQGLW PKSSLL       QG+    RDY L LFSK+
Sbjct: 359  APDDSVEDVLKVLQEYGQLVQGLWAPKSSLLFPDANSKQGI----RDYVLLLFSKN 410