BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00015798
         (587 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containi...   310   9e-83
ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|2...   310   1e-82
ref|XP_002511467.1| pentatricopeptide repeat-containing protein,...   304   6e-81
ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containi...   303   2e-80
sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-c...   278   4e-73

>ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Vitis vinifera]
          Length = 450

 Score =  310 bits (795), Expect = 9e-83
 Identities = 150/193 (77%), Positives = 171/193 (88%)
 Frame = -2

Query: 586 RKVFDEMIDAGVLPSVATYNAFIQILCKKDCVENAALVFEEMVKKGYVPNSTTYGVVIRG 407
           ++VF+EMI  GVLPSVATYNAFIQ+LCKKD VENA  VFEEM++KGY+PNSTTY VVIRG
Sbjct: 254 QRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRG 313

Query: 406 WCHVGKMDRAMEYMDRMKNDECEPNVQTYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPN 227
            CHVG+M++AME+M RMK+DECEPNVQ YNVVIRY+CD  EIEK L VFEKMG  DCLPN
Sbjct: 314 LCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKMGDADCLPN 373

Query: 226 LDSYNVLIGAMFVRKKADDLLVAGKMLIEMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKE 47
           LD+YN+LI AMFVRKK+D LL AGK+LIEMV+RGFLPRKFT+NRVL+GL LTG Q+FAKE
Sbjct: 374 LDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFLPRKFTFNRVLDGLLLTGNQDFAKE 433

Query: 46  ILRLHSRSGRLPR 8
           ILRL SR GRLPR
Sbjct: 434 ILRLQSRCGRLPR 446



 Score = 85.9 bits (211), Expect = 5e-15
 Identities = 53/181 (29%), Positives = 92/181 (50%)
 Frame = -2

Query: 583 KVFDEMIDAGVLPSVATYNAFIQILCKKDCVENAALVFEEMVKKGYVPNSTTYGVVIRGW 404
           K+F  M + G +  + ++N  + +LCK   VE A         K +      + ++++G+
Sbjct: 157 KIFFSMHEHGCVQDLNSFNTILDVLCKSKRVEMAD-------NKLFKVFRGRFRILLKGF 209

Query: 403 CHVGKMDRAMEYMDRMKNDECEPNVQTYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPNL 224
              G++  A E+  +MK  +CE +V TY  V+  +   GE+ KA  VF +M     LP++
Sbjct: 210 FRAGQLKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSV 269

Query: 223 DSYNVLIGAMFVRKKADDLLVAGKMLIEMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKEI 44
            +YN  I  +    K D++  A  +  EM+ +G++P   TYN V+ GL   G+ E A E 
Sbjct: 270 ATYNAFIQVLC---KKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEF 326

Query: 43  L 41
           +
Sbjct: 327 M 327


>ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|222868556|gb|EEF05687.1|
           predicted protein [Populus trichocarpa]
          Length = 491

 Score =  310 bits (794), Expect = 1e-82
 Identities = 148/193 (76%), Positives = 171/193 (88%)
 Frame = -2

Query: 586 RKVFDEMIDAGVLPSVATYNAFIQILCKKDCVENAALVFEEMVKKGYVPNSTTYGVVIRG 407
           RKVFD M+  GVLPSVATYNAFIQ+LCKKD V+NA ++FEEMV KGYVPNS TY +VIRG
Sbjct: 295 RKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRG 354

Query: 406 WCHVGKMDRAMEYMDRMKNDECEPNVQTYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPN 227
            CH G+M+RAME+M RMK+D CEPNVQTYN+VIRY+CD+GEI+KAL++F+KM  GDCLPN
Sbjct: 355 LCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPN 414

Query: 226 LDSYNVLIGAMFVRKKADDLLVAGKMLIEMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKE 47
           LD+YN+LI AMFVRKK+DDLLVAG +LIEMVDRGF+PRKFT+NRVLNGL LTG Q FAKE
Sbjct: 415 LDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLNGLLLTGNQGFAKE 474

Query: 46  ILRLHSRSGRLPR 8
           ILRL SR GRL R
Sbjct: 475 ILRLQSRCGRLTR 487



 Score =  102 bits (255), Expect = 4e-20
 Identities = 65/215 (30%), Positives = 105/215 (48%), Gaps = 34/215 (15%)
 Frame = -2

Query: 583 KVFDEMIDAGVLPSVATYNAFIQILCKK-------------------DCVE--------- 488
           KVF  M   G    + ++N  + +LCK                    DCV          
Sbjct: 157 KVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWC 216

Query: 487 -----NAAL-VFEEMVKKGYVPNSTTYGVVIRGWCHVGKMDRAMEYMDRMKNDECEPNVQ 326
                N AL + +EMVK+G  PN T+Y  +++G+   G+++ A ++   MK  +CE +V 
Sbjct: 217 LIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVI 276

Query: 325 TYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPNLDSYNVLIGAMFVRKKADDLLVAGKML 146
           TY  VI  +   GEI++A +VF+ M +   LP++ +YN  I  +  +   D+ +V   + 
Sbjct: 277 TYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIV---IF 333

Query: 145 IEMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKEIL 41
            EMV +G++P   TYN V+ GL   G+ E A E +
Sbjct: 334 EEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFM 368


>ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550582|gb|EEF52069.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 482

 Score =  304 bits (779), Expect = 6e-81
 Identities = 142/195 (72%), Positives = 170/195 (87%)
 Frame = -2

Query: 586 RKVFDEMIDAGVLPSVATYNAFIQILCKKDCVENAALVFEEMVKKGYVPNSTTYGVVIRG 407
           R VF++M+  GVLPSVAT+NA IQILCKKD VENA L+FEEMVK+GYVPNS TY +VIRG
Sbjct: 286 RNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNLVIRG 345

Query: 406 WCHVGKMDRAMEYMDRMKNDECEPNVQTYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPN 227
            CHVG+M RAME M+RM++D+CEPNVQTYN++IRY+CD GEIEK L++F+KMG GDCLPN
Sbjct: 346 LCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKMGNGDCLPN 405

Query: 226 LDSYNVLIGAMFVRKKADDLLVAGKMLIEMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKE 47
           LD+YN+LI +MFVRK +D+LLVAGK+L+EMVDRGFLPRK T+NRVL+GL LTG Q+FAKE
Sbjct: 406 LDTYNILINSMFVRKNSDNLLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFAKE 465

Query: 46  ILRLHSRSGRLPRHF 2
           IL L    GRLPR F
Sbjct: 466 ILSLQGGCGRLPRKF 480



 Score = 95.1 bits (235), Expect = 8e-18
 Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 34/214 (15%)
 Frame = -2

Query: 580 VFDEMIDAGVLPSVATYNAFIQILCKKDCVENAALVFE---------------------- 467
           VF  M + G    ++++N  + +LCK   VE A  +F+                      
Sbjct: 149 VFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCVSYNIIVNGWCL 208

Query: 466 ------------EMVKKGYVPNSTTYGVVIRGWCHVGKMDRAMEYMDRMKNDECEPNVQT 323
                       EMV++G  PN TTY +++ G+   G+ + A  +   MK  +C+ +V T
Sbjct: 209 IKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFFLEMKKRKCDIDVVT 268

Query: 322 YNVVIRYYCDDGEIEKALEVFEKMGRGDCLPNLDSYNVLIGAMFVRKKADDLLVAGKMLI 143
           Y  VI      GEI++A  VF +M +   LP++ ++N LI  +  +   ++ ++   +  
Sbjct: 269 YTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAIL---IFE 325

Query: 142 EMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKEIL 41
           EMV RG++P   TYN V+ GL   G+ + A E++
Sbjct: 326 EMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELM 359


>ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
           gi|449487784|ref|XP_004157799.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  303 bits (775), Expect = 2e-80
 Identities = 145/195 (74%), Positives = 168/195 (86%)
 Frame = -2

Query: 586 RKVFDEMIDAGVLPSVATYNAFIQILCKKDCVENAALVFEEMVKKGYVPNSTTYGVVIRG 407
           RKVF+EM+  G+LPS ATYNA IQ+LCKKD VENA L+FEEMVKKGYVPN TTY VVIRG
Sbjct: 307 RKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRG 366

Query: 406 WCHVGKMDRAMEYMDRMKNDECEPNVQTYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPN 227
             H G MD+AME+++RMK D CEPNVQTYNV IRY+CD G++EK L +FEKMG+G  LPN
Sbjct: 367 LFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQGS-LPN 425

Query: 226 LDSYNVLIGAMFVRKKADDLLVAGKMLIEMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKE 47
           LD+YNVLI AMFVRKK++DL+VAGK+L+EMVDRGF+PRKFT+NRVLNGL LTG Q FAKE
Sbjct: 426 LDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFAKE 485

Query: 46  ILRLHSRSGRLPRHF 2
           ILRL S+ GRLPR F
Sbjct: 486 ILRLQSKCGRLPRQF 500



 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 57/177 (32%), Positives = 89/177 (50%)
 Frame = -2

Query: 541 VATYNAFIQILCKKDCVENAALVFEEMVKKGYVPNSTTYGVVIRGWCHVGKMDRAMEYMD 362
           V +YN      C       A  V +EMV++G  P  TTY ++++G+   G++  A E+  
Sbjct: 217 VVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFL 276

Query: 361 RMKNDECEPNVQTYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPNLDSYNVLIGAMFVRK 182
           +MK  E E +V TY  ++  +   GEI++A +VF +M     LP+  +YN +I  +    
Sbjct: 277 QMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLC--- 333

Query: 181 KADDLLVAGKMLIEMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKEILRLHSRSGRLP 11
           K D +  A  M  EMV +G++P   TYN V+ GL   G  + A E +      G  P
Sbjct: 334 KKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEP 390



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 38/132 (28%), Positives = 65/132 (49%)
 Frame = -2

Query: 442 PNSTTYGVVIRGWCHVGKMDRAMEYMDRMKNDECEPNVQTYNVVIRYYCDDGEIEKALEV 263
           P+S T+ ++   +   GK DRA++    M+   C  ++ ++N ++   C    +E A   
Sbjct: 145 PSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNN 204

Query: 262 FEKMGRGDCLPNLDSYNVLIGAMFVRKKADDLLVAGKMLIEMVDRGFLPRKFTYNRVLNG 83
             K+ RG    ++ SYN++     + K+    L   ++L EMV+RG  P   TYN +L G
Sbjct: 205 LFKVLRGKFKADVVSYNIIANGWCLIKRTPKAL---EVLKEMVERGLTPTITTYNILLKG 261

Query: 82  LTLTGQQEFAKE 47
               GQ + A E
Sbjct: 262 YFRAGQLKEAWE 273


>sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor gi|5882733|gb|AAD55286.1|AC008263_17 Contains
           a PF|01535 DUF17 domain [Arabidopsis thaliana]
           gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical
           protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  278 bits (712), Expect = 4e-73
 Identities = 135/196 (68%), Positives = 162/196 (82%), Gaps = 1/196 (0%)
 Frame = -2

Query: 586 RKVFDEMIDAGVLPSVATYNAFIQILCKKDCVENAALVFEEMVKKGYVPNSTTYGVVIRG 407
           R VFDEMI  GVLPSVATYNA IQ+LCKKD VENA ++FEEMV++GY PN TTY V+IRG
Sbjct: 285 RNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRG 344

Query: 406 WCHVGKMDRAMEYMDRMKNDECEPNVQTYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPN 227
             H G+  R  E M RM+N+ CEPN QTYN++IRYY +  E+EKAL +FEKMG GDCLPN
Sbjct: 345 LFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPN 404

Query: 226 LDSYNVLIGAMFVRKKADDLLVAGKMLIEMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKE 47
           LD+YN+LI  MFVRK+++D++VAGK+L+EMV+RGF+PRKFT+NRVLNGL LTG Q FAKE
Sbjct: 405 LDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKE 464

Query: 46  ILRLHSRSG-RLPRHF 2
           ILRL S+SG RL R F
Sbjct: 465 ILRLQSKSGSRLLRKF 480



 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 34/225 (15%)
 Frame = -2

Query: 583 KVFDEMIDAGVLPSVATYNAFIQILCKKDCVENAALVF---------------------- 470
           K+F  M + G    +A++N  + +LCK   VE A  +F                      
Sbjct: 147 KLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWC 206

Query: 469 ------------EEMVKKGYVPNSTTYGVVIRGWCHVGKMDRAMEYMDRMKNDECEPNVQ 326
                       +EMV++G  PN TTY  +++G+   G++  A E+   MK  +CE +V 
Sbjct: 207 LIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVV 266

Query: 325 TYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPNLDSYNVLIGAMFVRKKADDLLVAGKML 146
           TY  V+  +   GEI++A  VF++M R   LP++ +YN +I  +  +   ++ +V   M 
Sbjct: 267 TYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVV---MF 323

Query: 145 IEMVDRGFLPRKFTYNRVLNGLTLTGQQEFAKEILRLHSRSGRLP 11
            EMV RG+ P   TYN ++ GL   G+    +E+++     G  P
Sbjct: 324 EEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEP 368



 Score = 85.1 bits (209), Expect = 8e-15
 Identities = 50/165 (30%), Positives = 85/165 (51%)
 Frame = -2

Query: 583 KVFDEMIDAGVLPSVATYNAFIQILCKKDCVENAALVFEEMVKKGYVPNSTTYGVVIRGW 404
           +V  EM++ G+ P++ TYN  ++   +   + +A   F EM K+    +  TY  V+ G+
Sbjct: 216 EVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGF 275

Query: 403 CHVGKMDRAMEYMDRMKNDECEPNVQTYNVVIRYYCDDGEIEKALEVFEKMGRGDCLPNL 224
              G++ RA    D M  +   P+V TYN +I+  C    +E A+ +FE+M R    PN+
Sbjct: 276 GVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNV 335

Query: 223 DSYNVLIGAMFVRKKADDLLVAGKMLIEMVDRGFLPRKFTYNRVL 89
            +YNVLI  +F    A +     +++  M + G  P   TYN ++
Sbjct: 336 TTYNVLIRGLF---HAGEFSRGEELMQRMENEGCEPNFQTYNMMI 377



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 39/132 (29%), Positives = 65/132 (49%)
 Frame = -2

Query: 442 PNSTTYGVVIRGWCHVGKMDRAMEYMDRMKNDECEPNVQTYNVVIRYYCDDGEIEKALEV 263
           P+  T+ +V   +   GK D+A++    M    C  ++ ++N ++   C    +EKA E+
Sbjct: 124 PSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYEL 183

Query: 262 FEKMGRGDCLPNLDSYNVLIGAMFVRKKADDLLVAGKMLIEMVDRGFLPRKFTYNRVLNG 83
           F  + RG    +  +YNV++    + K+    L   ++L EMV+RG  P   TYN +L G
Sbjct: 184 FRAL-RGRFSVDTVTYNVILNGWCLIKRTPKAL---EVLKEMVERGINPNLTTYNTMLKG 239

Query: 82  LTLTGQQEFAKE 47
               GQ   A E
Sbjct: 240 FFRAGQIRHAWE 251