BLASTX nr result
ID: Bupleurum21_contig00015797
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00015797
(607 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containi... 323 2e-86
sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-c... 315 3e-84
ref|NP_177628.2| pentatricopeptide repeat-containing protein [Ar... 315 3e-84
dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana] 314 9e-84
ref|XP_003601293.1| Pentatricopeptide repeat-containing protein,... 311 6e-83
>ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 323 bits (827), Expect = 2e-86
Identities = 150/201 (74%), Positives = 180/201 (89%), Gaps = 1/201 (0%)
Frame = +2
Query: 2 AFDHAIDIAGRIREYSTLWTLVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSM 181
+FDHAIDIAGR+R+Y T+W LV RM+ RRIGP+ KTFAII ER VAAGKPDRA+KVF+SM
Sbjct: 114 SFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSM 173
Query: 182 HEHGCCQNLNSFNTFLDVLCKSRRAEMAYN-LFKVFRGRFKVDTITYNILANGFCLIKRT 358
EHGC Q+L+SFNT LD+LCKS+R EMAYN LFKV RG+FK D ++YNI+ANG+CLIKRT
Sbjct: 174 REHGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRT 233
Query: 359 PRALEIMREMVERGLEPNLNTYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTV 538
P+ALE+++EMVERGL P + TYN +LKGYFRAGQLKEAWEFFL+MK+R+ EIDVVTYTT+
Sbjct: 234 PKALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTM 293
Query: 539 VHGFGVAGEVKRARKVFDEMI 601
VHGFGV GE+KRARKVF+EM+
Sbjct: 294 VHGFGVVGEIKRARKVFNEMV 314
Score = 82.8 bits (203), Expect = 4e-14
Identities = 54/191 (28%), Positives = 84/191 (43%)
Frame = +2
Query: 26 AGRIREYSTLWTLVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSMHEHGCCQN 205
AG+++E W +MK R + + T+ + G+ RA KVF M G +
Sbjct: 265 AGQLKE---AWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPS 321
Query: 206 LNSFNTFLDVLCKSRRAEMAYNLFKVFRGRFKVDTITYNILANGFCLIKRTPRALEIMRE 385
++N + VLCK E A +F+ E
Sbjct: 322 TATYNAMIQVLCKKDSVENAVLMFE----------------------------------E 347
Query: 386 MVERGLEPNLNTYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVVHGFGVAGE 565
MV++G PNL TYN +++G F AG + +A EF MK CE +V TY + F AG+
Sbjct: 348 MVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGD 407
Query: 566 VKRARKVFDEM 598
V++ +F++M
Sbjct: 408 VEKGLSMFEKM 418
Score = 55.5 bits (132), Expect = 7e-06
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Frame = +2
Query: 95 PNPKTFAIITERLVAAGKPDRAVKVFVSMHEHGCCQNLNSFNTFLDVLCKSRRAEMAYNL 274
PN T+ ++ L AG D+A++ M GC N+ ++N + C + E ++
Sbjct: 355 PNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSM 414
Query: 275 FKVFRGRFKVDTITYNILANGFCLIKRTPRAL---EIMREMVERGLEPNLNTYNTMLKGY 445
F+ + TYN+L + + K++ + +++ EMV+RG P T+N +L G
Sbjct: 415 FEKMGQGSLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGL 474
Query: 446 FRAG 457
G
Sbjct: 475 LLTG 478
>sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor gi|5882733|gb|AAD55286.1|AC008263_17 Contains
a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical
protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 315 bits (808), Expect = 3e-84
Identities = 144/200 (72%), Positives = 175/200 (87%)
Frame = +2
Query: 2 AFDHAIDIAGRIREYSTLWTLVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSM 181
+FD AIDIA R+ + T+W+L+ RM++ RIGP+PKTFAI+ ER +AGKPD+AVK+F++M
Sbjct: 93 SFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNM 152
Query: 182 HEHGCCQNLNSFNTFLDVLCKSRRAEMAYNLFKVFRGRFKVDTITYNILANGFCLIKRTP 361
HEHGC Q+L SFNT LDVLCKS+R E AY LF+ RGRF VDT+TYN++ NG+CLIKRTP
Sbjct: 153 HEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTP 212
Query: 362 RALEIMREMVERGLEPNLNTYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVV 541
+ALE+++EMVERG+ PNL TYNTMLKG+FRAGQ++ AWEFFLEMKKR CEIDVVTYTTVV
Sbjct: 213 KALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVV 272
Query: 542 HGFGVAGEVKRARKVFDEMI 601
HGFGVAGE+KRAR VFDEMI
Sbjct: 273 HGFGVAGEIKRARNVFDEMI 292
Score = 82.8 bits (203), Expect = 4e-14
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 4/197 (2%)
Frame = +2
Query: 26 AGRIREYSTLWTLVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSMHEHGCCQN 205
AG+IR W MK R + T+ + AG+ RA VF M G +
Sbjct: 243 AGQIRH---AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPS 299
Query: 206 LNSFNTFLDVLCKSRRAEMAYNLFK-VFRGRFKVDTITYNILANGFCLIKRTPRALEIMR 382
+ ++N + VLCK E A +F+ + R ++ + TYN+L G R E+M+
Sbjct: 300 VATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQ 359
Query: 383 EMVERGLEPNLNTYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVVHGFGV-- 556
M G EPN TYN M++ Y ++++A F +M C ++ TY ++ G V
Sbjct: 360 RMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRK 419
Query: 557 -AGEVKRARKVFDEMID 604
+ ++ A K+ EM++
Sbjct: 420 RSEDMVVAGKLLLEMVE 436
Score = 82.4 bits (202), Expect = 6e-14
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Frame = +2
Query: 62 LVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSMHEHGCCQNLNSFNTFLDVLC 241
++ M R I PN T+ + + AG+ A + F+ M + C ++ ++ T +
Sbjct: 217 VLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFG 276
Query: 242 KSRRAEMAYNLF-KVFRGRFKVDTITYNILANGFCLIKRTPRALEIMREMVERGLEPNLN 418
+ + A N+F ++ R TYN + C A+ + EMV RG EPN+
Sbjct: 277 VAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 336
Query: 419 TYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVVHGFGVAGEVKRARKVFDEM 598
TYN +++G F AG+ E M+ CE + TY ++ + EV++A +F++M
Sbjct: 337 TYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 396
Score = 58.2 bits (139), Expect = 1e-06
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Frame = +2
Query: 74 MKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSMHEHGCCQNLNSFNTFLDVLCKSRR 253
M R PN T+ ++ L AG+ R ++ M GC N ++N + +
Sbjct: 326 MVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSE 385
Query: 254 AEMAYNLF-KVFRGRFKVDTITYNILANGFCLIKRTPRAL---EIMREMVERGLEPNLNT 421
E A LF K+ G + TYNIL +G + KR+ + +++ EMVERG P T
Sbjct: 386 VEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFT 445
Query: 422 YNTMLKGYFRAG 457
+N +L G G
Sbjct: 446 FNRVLNGLLLTG 457
>ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis
thaliana] gi|332197524|gb|AEE35645.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 315 bits (808), Expect = 3e-84
Identities = 144/200 (72%), Positives = 175/200 (87%)
Frame = +2
Query: 2 AFDHAIDIAGRIREYSTLWTLVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSM 181
+FD AIDIA R+ + T+W+L+ RM++ RIGP+PKTFAI+ ER +AGKPD+AVK+F++M
Sbjct: 93 SFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNM 152
Query: 182 HEHGCCQNLNSFNTFLDVLCKSRRAEMAYNLFKVFRGRFKVDTITYNILANGFCLIKRTP 361
HEHGC Q+L SFNT LDVLCKS+R E AY LF+ RGRF VDT+TYN++ NG+CLIKRTP
Sbjct: 153 HEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTP 212
Query: 362 RALEIMREMVERGLEPNLNTYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVV 541
+ALE+++EMVERG+ PNL TYNTMLKG+FRAGQ++ AWEFFLEMKKR CEIDVVTYTTVV
Sbjct: 213 KALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVV 272
Query: 542 HGFGVAGEVKRARKVFDEMI 601
HGFGVAGE+KRAR VFDEMI
Sbjct: 273 HGFGVAGEIKRARNVFDEMI 292
Score = 82.4 bits (202), Expect = 6e-14
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Frame = +2
Query: 62 LVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSMHEHGCCQNLNSFNTFLDVLC 241
++ M R I PN T+ + + AG+ A + F+ M + C ++ ++ T +
Sbjct: 217 VLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFG 276
Query: 242 KSRRAEMAYNLF-KVFRGRFKVDTITYNILANGFCLIKRTPRALEIMREMVERGLEPNLN 418
+ + A N+F ++ R TYN + C A+ + EMV RG EPN+
Sbjct: 277 VAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 336
Query: 419 TYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVVHGFGVAGEVKRARKVFDEM 598
TYN +++G F AG+ E M+ CE + TY ++ + EV++A +F++M
Sbjct: 337 TYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 396
Score = 82.0 bits (201), Expect = 7e-14
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 1/178 (0%)
Frame = +2
Query: 26 AGRIREYSTLWTLVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSMHEHGCCQN 205
AG+IR W MK R + T+ + AG+ RA VF M G +
Sbjct: 243 AGQIRH---AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPS 299
Query: 206 LNSFNTFLDVLCKSRRAEMAYNLFK-VFRGRFKVDTITYNILANGFCLIKRTPRALEIMR 382
+ ++N + VLCK E A +F+ + R ++ + TYN+L G R E+M+
Sbjct: 300 VATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQ 359
Query: 383 EMVERGLEPNLNTYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVVHGFGV 556
M G EPN TYN M++ Y ++++A F +M C ++ TY ++ G V
Sbjct: 360 RMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFV 417
>dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 314 bits (804), Expect = 9e-84
Identities = 143/200 (71%), Positives = 174/200 (87%)
Frame = +2
Query: 2 AFDHAIDIAGRIREYSTLWTLVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSM 181
+FD AIDIA R+ + T+W+L+ RM++ RIGP+PKTFAI+ ER +AGKPD+AVK+F++M
Sbjct: 87 SFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNM 146
Query: 182 HEHGCCQNLNSFNTFLDVLCKSRRAEMAYNLFKVFRGRFKVDTITYNILANGFCLIKRTP 361
HEHGC Q+L SFNT LDVLCKS+R E AY LF+ RGRF VDT+TYN++ NG+CLIKRTP
Sbjct: 147 HEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTP 206
Query: 362 RALEIMREMVERGLEPNLNTYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVV 541
+ LE+++EMVERG+ PNL TYNTMLKG+FRAGQ++ AWEFFLEMKKR CEIDVVTYTTVV
Sbjct: 207 KTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVV 266
Query: 542 HGFGVAGEVKRARKVFDEMI 601
HGFGVAGE+KRAR VFDEMI
Sbjct: 267 HGFGVAGEIKRARNVFDEMI 286
Score = 82.4 bits (202), Expect = 6e-14
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Frame = +2
Query: 62 LVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSMHEHGCCQNLNSFNTFLDVLC 241
++ M R I PN T+ + + AG+ A + F+ M + C ++ ++ T +
Sbjct: 211 VLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFG 270
Query: 242 KSRRAEMAYNLF-KVFRGRFKVDTITYNILANGFCLIKRTPRALEIMREMVERGLEPNLN 418
+ + A N+F ++ R TYN + C A+ + EMV RG EPN+
Sbjct: 271 VAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVT 330
Query: 419 TYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVVHGFGVAGEVKRARKVFDEM 598
TYN +++G F AG+ E M+ CE + TY ++ + EV++A +F++M
Sbjct: 331 TYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKM 390
Score = 82.0 bits (201), Expect = 7e-14
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 1/178 (0%)
Frame = +2
Query: 26 AGRIREYSTLWTLVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSMHEHGCCQN 205
AG+IR W MK R + T+ + AG+ RA VF M G +
Sbjct: 237 AGQIRH---AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPS 293
Query: 206 LNSFNTFLDVLCKSRRAEMAYNLFK-VFRGRFKVDTITYNILANGFCLIKRTPRALEIMR 382
+ ++N + VLCK E A +F+ + R ++ + TYN+L G R E+M+
Sbjct: 294 VATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQ 353
Query: 383 EMVERGLEPNLNTYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVVHGFGV 556
M G EPN TYN M++ Y ++++A F +M C ++ TY ++ G V
Sbjct: 354 RMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFV 411
>ref|XP_003601293.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula] gi|355490341|gb|AES71544.1|
Pentatricopeptide repeat-containing protein, partial
[Medicago truncatula]
Length = 317
Score = 311 bits (797), Expect = 6e-83
Identities = 141/200 (70%), Positives = 173/200 (86%)
Frame = +2
Query: 2 AFDHAIDIAGRIREYSTLWTLVTRMKTRRIGPNPKTFAIITERLVAAGKPDRAVKVFVSM 181
+F+HA+DIA R+REY+T W L+ RM+ R+GP PKTFAI+ ER GK +AVKVF+SM
Sbjct: 102 SFEHAVDIAARLREYNTAWALMGRMRALRLGPTPKTFAILAERYATGGKAHKAVKVFLSM 161
Query: 182 HEHGCCQNLNSFNTFLDVLCKSRRAEMAYNLFKVFRGRFKVDTITYNILANGFCLIKRTP 361
HEHGC Q+LNSFNT LDVLCK++R EMA NLFK RGRFK D+++YNI+ANG+CLIKRTP
Sbjct: 162 HEHGCHQDLNSFNTILDVLCKTKRVEMANNLFKTLRGRFKCDSVSYNIMANGWCLIKRTP 221
Query: 362 RALEIMREMVERGLEPNLNTYNTMLKGYFRAGQLKEAWEFFLEMKKRKCEIDVVTYTTVV 541
AL++++EMVERG++P + TYNT+LKGYFR GQL EAWEFFLEMKKRKCEIDVVTYTT+V
Sbjct: 222 MALQVLKEMVERGVDPTMVTYNTLLKGYFRCGQLNEAWEFFLEMKKRKCEIDVVTYTTMV 281
Query: 542 HGFGVAGEVKRARKVFDEMI 601
HGFGVAGEVKR+++VFD M+
Sbjct: 282 HGFGVAGEVKRSKRVFDAMV 301