BLASTX nr result
ID: Bupleurum21_contig00015591
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00015591
(534 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002303899.1| predicted protein [Populus trichocarpa] gi|2... 259 2e-67
ref|XP_002531100.1| pentatricopeptide repeat-containing protein,... 256 2e-66
emb|CBI16200.3| unnamed protein product [Vitis vinifera] 246 1e-63
ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containi... 246 1e-63
ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containi... 244 6e-63
>ref|XP_002303899.1| predicted protein [Populus trichocarpa] gi|222841331|gb|EEE78878.1|
predicted protein [Populus trichocarpa]
Length = 427
Score = 259 bits (661), Expect = 2e-67
Identities = 123/178 (69%), Positives = 148/178 (83%)
Frame = +1
Query: 1 LVDNERFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPS 180
LVDN F +AN +F +MGF NSV+FN+MIKGWLEKGEWE+A KVFDEML R+VEPS
Sbjct: 143 LVDNGWFLEANELFDKGYEMGFRLNSVAFNVMIKGWLEKGEWEQASKVFDEMLERKVEPS 202
Query: 181 VVTYNCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMF 360
VVTYN IG+LC+ GE DKAKGL E+M KKGK PNA+T+ALLMEG C +G+ +AKK+MF
Sbjct: 203 VVTYNSLIGYLCRNGELDKAKGLLEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMF 262
Query: 361 DMEYQGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMCK 534
DMEY+GCKP +VN+GVLMSD+ + GK DEAK++L EMKKR +KPDVV YNILINY+CK
Sbjct: 263 DMEYRGCKPTVVNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCK 320
Score = 94.0 bits (232), Expect = 1e-17
Identities = 54/173 (31%), Positives = 89/173 (51%)
Frame = +1
Query: 1 LVDNERFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPS 180
L N D A + K G PN+++F ++++G GE EA+K+ +M R +P+
Sbjct: 213 LCRNGELDKAKGLLEDMIKKGKRPNAITFALLMEGSCLIGEHNEAKKMMFDMEYRGCKPT 272
Query: 181 VVTYNCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMF 360
VV + + L KRG+ D+AK + EM K+ P+ VTY +L+ LC G+ DA +++F
Sbjct: 273 VVNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDVVTYNILINYLCKEGRAADAYEVLF 332
Query: 361 DMEYQGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILI 519
+M+ GC+ Y +L+ R G F+ +L M P V + L+
Sbjct: 333 EMQVGGCEANAATYRMLVDGFCRVGDFEGGLKVLNAMLTSGHFPRVETFRSLV 385
Score = 92.8 bits (229), Expect = 3e-17
Identities = 52/155 (33%), Positives = 84/155 (54%)
Frame = +1
Query: 22 DDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPSVVTYNCQ 201
++A M G P V+F +++ ++G+ +EA+ V EM R ++P VVTYN
Sbjct: 255 NEAKKMMFDMEYRGCKPTVVNFGVLMSDLGKRGKIDEAKSVLHEMKKRHMKPDVVTYNIL 314
Query: 202 IGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMFDMEYQGC 381
I +LCK G A + EM G NA TY +L++G C +G F+ K++ M G
Sbjct: 315 INYLCKEGRAADAYEVLFEMQVGGCEANAATYRMLVDGFCRVGDFEGGLKVLNAMLTSGH 374
Query: 382 KPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRI 486
PR+ + L+ +V++G D A +L EM+KR++
Sbjct: 375 FPRVETFRSLVVGLVKSGNLDGACFVLEEMEKRQM 409
>ref|XP_002531100.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529296|gb|EEF31265.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 483
Score = 256 bits (653), Expect = 2e-66
Identities = 120/178 (67%), Positives = 151/178 (84%)
Frame = +1
Query: 1 LVDNERFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPS 180
LVDN+R DA +F + +MGF NSV FNI+IKGWL+KGEW +A KVFDEML R+VEPS
Sbjct: 160 LVDNDRLFDAKQLFDRSSEMGFRLNSVPFNILIKGWLKKGEWYQAGKVFDEMLERKVEPS 219
Query: 181 VVTYNCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMF 360
VVTYN IG+LC+ GE KAKGLF++M KKGK PNAVTYALLMEGLC +G++K+AKK++F
Sbjct: 220 VVTYNSLIGYLCRNGELGKAKGLFKDMIKKGKRPNAVTYALLMEGLCSMGEYKEAKKMLF 279
Query: 361 DMEYQGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMCK 534
DMEY+GCKP+ +N+GVLM+D+ + GK +EAK LL+EMKKRR +PDVV+YNILIN++CK
Sbjct: 280 DMEYRGCKPKNLNFGVLMNDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNILINHLCK 337
Score = 91.7 bits (226), Expect = 6e-17
Identities = 51/173 (29%), Positives = 89/173 (51%)
Frame = +1
Query: 1 LVDNERFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPS 180
L N A +F K G PN+V++ ++++G GE++EA+K+ +M R +P
Sbjct: 230 LCRNGELGKAKGLFKDMIKKGKRPNAVTYALLMEGLCSMGEYKEAKKMLFDMEYRGCKPK 289
Query: 181 VVTYNCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMF 360
+ + + L K+G+ ++AK L EM K+ P+ V Y +L+ LC GK +A K +F
Sbjct: 290 NLNFGVLMNDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNILINHLCKEGKVAEAYKTLF 349
Query: 361 DMEYQGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILI 519
+M+ GC+ Y +L + G+F+E +L M R P + +N +
Sbjct: 350 EMQIGGCEANAATYRMLADGFCQVGEFEEGLKVLNAMLVSRHAPRIETFNCFV 402
Score = 89.7 bits (221), Expect = 2e-16
Identities = 51/171 (29%), Positives = 86/171 (50%)
Frame = +1
Query: 19 FDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPSVVTYNC 198
+ +A M G P +++F +++ +KG+ EEA+ + EM R P VV YN
Sbjct: 271 YKEAKKMLFDMEYRGCKPKNLNFGVLMNDLGKKGKIEEAKLLLLEMKKRRFRPDVVIYNI 330
Query: 199 QIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMFDMEYQG 378
I LCK G+ +A EM G NA TY +L +G C +G+F++ K++ M
Sbjct: 331 LINHLCKEGKVAEAYKTLFEMQIGGCEANAATYRMLADGFCQVGEFEEGLKVLNAMLVSR 390
Query: 379 CKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMC 531
PR+ + + ++++G D A +L EM+KR++ D + L+ C
Sbjct: 391 HAPRIETFNCFVVGLMKSGSIDGAFFVLEEMEKRKMALDSDGWEALVRCCC 441
Score = 62.4 bits (150), Expect = 4e-08
Identities = 36/134 (26%), Positives = 71/134 (52%)
Frame = +1
Query: 130 EARKVFDEMLLREVEPSVVTYNCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLM 309
+A ++F+EM ++ ++N + L AK LF+ ++ G N+V + +L+
Sbjct: 133 KAIRLFNEMTGFNCIRTLQSFNALLNVLVDNDRLFDAKQLFDRSSEMGFRLNSVPFNILI 192
Query: 310 EGLCYLGKFKDAKKLMFDMEYQGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIK 489
+G G++ A K+ +M + +P +V Y L+ + RNG+ +AK L +M K+ +
Sbjct: 193 KGWLKKGEWYQAGKVFDEMLERKVEPSVVTYNSLIGYLCRNGELGKAKGLFKDMIKKGKR 252
Query: 490 PDVVMYNILINYMC 531
P+ V Y +L+ +C
Sbjct: 253 PNAVTYALLMEGLC 266
>emb|CBI16200.3| unnamed protein product [Vitis vinifera]
Length = 1093
Score = 246 bits (629), Expect = 1e-63
Identities = 116/178 (65%), Positives = 149/178 (83%)
Frame = +1
Query: 1 LVDNERFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPS 180
LV+N+RF DA +F + KMGF NS+SFNI+IKGWL KGEW++A +VF+EM+ +EV+P+
Sbjct: 564 LVENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPT 623
Query: 181 VVTYNCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMF 360
VVT+N IGFLC +G+ D A GL E+M +K PNAVTYALLMEGLC LGK+K+AKK+MF
Sbjct: 624 VVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMF 683
Query: 361 DMEYQGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMCK 534
DM+YQGCKPRL+N+GVLMSD+ R G+ D++K LL+EMK+RR KPDVV YNILIN++CK
Sbjct: 684 DMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCK 741
Score = 90.9 bits (224), Expect = 1e-16
Identities = 51/172 (29%), Positives = 90/172 (52%)
Frame = +1
Query: 16 RFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPSVVTYN 195
++ +A M G P ++F +++ +G ++++ + EM R +P VVTYN
Sbjct: 674 KYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYN 733
Query: 196 CQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMFDMEYQ 375
I LCK G +A + EM G PNA TY ++++G C + F+ K++ M
Sbjct: 734 ILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMC 793
Query: 376 GCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMC 531
G PRL ++ L+ +++NGK D A +L EM+KR+++ + + L+ C
Sbjct: 794 GHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMRFHLEAWEALVKDAC 845
Score = 55.8 bits (133), Expect = 4e-06
Identities = 38/170 (22%), Positives = 76/170 (44%)
Frame = +1
Query: 22 DDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPSVVTYNCQ 201
DDA +F+ ++MGF + S++ ++ +E + D + + +
Sbjct: 466 DDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIAL 525
Query: 202 IGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMFDMEYQGC 381
I K +KA LF+ M H V++ L+ L +F DA + G
Sbjct: 526 IQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGF 585
Query: 382 KPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMC 531
+ +++ +++ + G++D+A + EM + +KP VV +N LI ++C
Sbjct: 586 RRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLC 635
>ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Vitis vinifera]
Length = 501
Score = 246 bits (629), Expect = 1e-63
Identities = 116/178 (65%), Positives = 149/178 (83%)
Frame = +1
Query: 1 LVDNERFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPS 180
LV+N+RF DA +F + KMGF NS+SFNI+IKGWL KGEW++A +VF+EM+ +EV+P+
Sbjct: 202 LVENDRFLDAIGIFDRSTKMGFRRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPT 261
Query: 181 VVTYNCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMF 360
VVT+N IGFLC +G+ D A GL E+M +K PNAVTYALLMEGLC LGK+K+AKK+MF
Sbjct: 262 VVTFNSLIGFLCGKGDLDGAMGLLEDMIQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMF 321
Query: 361 DMEYQGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMCK 534
DM+YQGCKPRL+N+GVLMSD+ R G+ D++K LL+EMK+RR KPDVV YNILIN++CK
Sbjct: 322 DMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCK 379
Score = 90.9 bits (224), Expect = 1e-16
Identities = 51/172 (29%), Positives = 90/172 (52%)
Frame = +1
Query: 16 RFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPSVVTYN 195
++ +A M G P ++F +++ +G ++++ + EM R +P VVTYN
Sbjct: 312 KYKEAKKMMFDMDYQGCKPRLLNFGVLMSDLGRRGRIDDSKTLLLEMKRRRFKPDVVTYN 371
Query: 196 CQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMFDMEYQ 375
I LCK G +A + EM G PNA TY ++++G C + F+ K++ M
Sbjct: 372 ILINHLCKEGRALEAYKVLVEMQVGGCEPNAATYRMMVDGFCQVEDFEGGLKVLSAMLMC 431
Query: 376 GCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMC 531
G PRL ++ L+ +++NGK D A +L EM+KR+++ + + L+ C
Sbjct: 432 GHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEKRKMRFHLEAWEALVKDAC 483
Score = 55.8 bits (133), Expect = 4e-06
Identities = 38/170 (22%), Positives = 76/170 (44%)
Frame = +1
Query: 22 DDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPSVVTYNCQ 201
DDA +F+ ++MGF + S++ ++ +E + D + + +
Sbjct: 104 DDALSLFNQYQQMGFKHDYPSYSALVYKLARSRNFEAVETLLDYLQNINIRCRETLFIAL 163
Query: 202 IGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMFDMEYQGC 381
I K +KA LF+ M H V++ L+ L +F DA + G
Sbjct: 164 IQHYGKSQMPEKAVELFQRMPSFNCHRTLVSFNTLLNVLVENDRFLDAIGIFDRSTKMGF 223
Query: 382 KPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMC 531
+ +++ +++ + G++D+A + EM + +KP VV +N LI ++C
Sbjct: 224 RRNSISFNIIIKGWLGKGEWDKAWQVFEEMIDKEVKPTVVTFNSLIGFLC 273
>ref|XP_003540737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Glycine max]
Length = 449
Score = 244 bits (623), Expect = 6e-63
Identities = 116/178 (65%), Positives = 147/178 (82%)
Frame = +1
Query: 1 LVDNERFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPS 180
L+DN+RFD+AN +F + +MGF PN+V+FNIM+KG L KGEW +A +VFDEML + V+PS
Sbjct: 150 LIDNDRFDEANDIFGKSYEMGFRPNTVTFNIMVKGRLAKGEWGKACEVFDEMLQKRVQPS 209
Query: 181 VVTYNCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMF 360
VVTYN IGFLC++G+ DKA L E+M +KGKH N VTYALLMEGLC + K ++AKKLMF
Sbjct: 210 VVTYNSLIGFLCRKGDLDKAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMF 269
Query: 361 DMEYQGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMCK 534
DM Y+GCK + VN+GVLM+D+ + GK +EAK+LL EMKKRR+KPDVV YNILINY+CK
Sbjct: 270 DMAYRGCKAQPVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCK 327
Score = 93.2 bits (230), Expect = 2e-17
Identities = 51/173 (29%), Positives = 94/173 (54%)
Frame = +1
Query: 13 ERFDDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPSVVTY 192
E+ ++A + G V+F +++ ++G+ EEA+ + EM R ++P VVTY
Sbjct: 259 EKTEEAKKLMFDMAYRGCKAQPVNFGVLMNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTY 318
Query: 193 NCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMFDMEY 372
N I +LCK G+ +A + EM G PNA TY ++++GLC +G F+ A ++ M
Sbjct: 319 NILINYLCKEGKAMEAYKVLLEMQIGGCVPNAATYRMVVDGLCQIGDFEVALSVLNAMLT 378
Query: 373 QGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILINYMC 531
PR + ++ ++++G D + +L EM+KR+++ D+ + +I C
Sbjct: 379 SRHCPRSETFNCMVVGLLKSGNIDGSCFVLEEMEKRKLEFDLESWETIIKSAC 431
Score = 83.6 bits (205), Expect = 2e-14
Identities = 47/166 (28%), Positives = 85/166 (51%)
Frame = +1
Query: 22 DDANVMFHGARKMGFWPNSVSFNIMIKGWLEKGEWEEARKVFDEMLLREVEPSVVTYNCQ 201
D A + + G N V++ ++++G + EEA+K+ +M R + V +
Sbjct: 227 DKAMALLEDMGQKGKHANEVTYALLMEGLCSVEKTEEAKKLMFDMAYRGCKAQPVNFGVL 286
Query: 202 IGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALLMEGLCYLGKFKDAKKLMFDMEYQGC 381
+ L KRG+ ++AK L EM K+ P+ VTY +L+ LC GK +A K++ +M+ GC
Sbjct: 287 MNDLGKRGKVEEAKSLLHEMKKRRLKPDVVTYNILINYLCKEGKAMEAYKVLLEMQIGGC 346
Query: 382 KPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRIKPDVVMYNILI 519
P Y +++ + + G F+ A ++L M R P +N ++
Sbjct: 347 VPNAATYRMVVDGLCQIGDFEVALSVLNAMLTSRHCPRSETFNCMV 392
Score = 60.5 bits (145), Expect = 2e-07
Identities = 34/135 (25%), Positives = 70/135 (51%)
Frame = +1
Query: 127 EEARKVFDEMLLREVEPSVVTYNCQIGFLCKRGEFDKAKGLFEEMNKKGKHPNAVTYALL 306
E+A ++F+ M ++ ++N + L FD+A +F + + G PN VT+ ++
Sbjct: 122 EKAVELFNRMPQFNCTRTIQSFNALLNVLIDNDRFDEANDIFGKSYEMGFRPNTVTFNIM 181
Query: 307 MEGLCYLGKFKDAKKLMFDMEYQGCKPRLVNYGVLMSDIVRNGKFDEAKNLLVEMKKRRI 486
++G G++ A ++ +M + +P +V Y L+ + R G D+A LL +M ++
Sbjct: 182 VKGRLAKGEWGKACEVFDEMLQKRVQPSVVTYNSLIGFLCRKGDLDKAMALLEDMGQKGK 241
Query: 487 KPDVVMYNILINYMC 531
+ V Y +L+ +C
Sbjct: 242 HANEVTYALLMEGLC 256