BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00014327
         (941 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              273   3e-71
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   265   9e-69
ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   236   6e-60
ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polyme...   233   4e-59
ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arab...   233   6e-59

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  273 bits (699), Expect = 3e-71
 Identities = 150/297 (50%), Positives = 199/297 (67%), Gaps = 1/297 (0%)
 Frame = +3

Query: 6   ELEFRKIFLLLNYIGRKKLEDVVSIGDAYKILEMKDYPMENFELQVWNMYGRICHVDNEA 185
           ELEFRK FL+L+YIG K+ ED++S   A +IL++K+ PM  FE +VWN  GR    +   
Sbjct: 107 ELEFRKAFLILSYIGDKRPEDLLS---AEEILKLKNLPMGVFETEVWNNLGRKFIKEE-- 161

Query: 186 TDRRKYLDWECGKTHHYHCHVWRDGSFSFKGPYXXXXXXXXXXXXGDENIMIVKFEEHAN 365
            DR++  DW+  KTH YHCHV  DGS+ FKGPY            GDENI++VKF E   
Sbjct: 162 -DRQRSFDWDSDKTHIYHCHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVT 220

Query: 366 GGSTV-FSGNHNNLYAKIAKEGILVGQRRYRFFVFKDGDRKGKKKSPITSDVKCYFIRME 542
             S++  S + N  Y KIA+EGI VG R+YRFFVFKDG ++ KKK+P TS VKCYF+ ME
Sbjct: 221 DRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNP-TSSVKCYFVFME 279

Query: 543 LISPCGVKDHYDLSNKTMHQARCLFMHLHTTPSMAKYASRCSLILSQTMKVEVNLDTVHV 722
             +         LS KT+H+ARC+FMH H   S+AKY +R SLILS+T+K++V+L TV++
Sbjct: 280 SSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNI 330

Query: 723 ERIEDIPCRNEKGISVCNEDGEILIHTDGTAYISEDLAMKCPRALQSAKYLRNKKSE 893
           +RI+D P R+E G  V +ED + LI TDGT +ISEDLA++CP  L   KY+ N  S+
Sbjct: 331 QRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSD 387


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
           vinifera]
          Length = 943

 Score =  265 bits (678), Expect = 9e-69
 Identities = 150/308 (48%), Positives = 200/308 (64%), Gaps = 9/308 (2%)
 Frame = +3

Query: 6   ELEFRKIFLLLNYIGRKKLEDVVSIGDAYKILEMKDYPMENFELQVWNMYGRICHVDNEA 185
           ELEFRK FL+L+YIG  + ED++S   A +IL++K+ PM  FE +VWN  GR    +   
Sbjct: 107 ELEFRKAFLILSYIGELRPEDLLS---AEEILKLKNLPMGVFETEVWNNLGRKFIKEE-- 161

Query: 186 TDRRKYLDWECGKTHHYHCHVWRDGSFSFK--------GPYXXXXXXXXXXXXGDENIMI 341
            DR++  DW+  KTH YHCHV  DGS+ FK        GPY            GDENI++
Sbjct: 162 -DRQRSFDWDSDKTHIYHCHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENILL 220

Query: 342 VKFEEHANGGSTV-FSGNHNNLYAKIAKEGILVGQRRYRFFVFKDGDRKGKKKSPITSDV 518
           VKF E     S++  S + N  Y KIA+EGI VG R+YRFFVFKDG ++ KKK+P TS V
Sbjct: 221 VKFAEDVTDRSSLNCSTDSNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNP-TSSV 279

Query: 519 KCYFIRMELISPCGVKDHYDLSNKTMHQARCLFMHLHTTPSMAKYASRCSLILSQTMKVE 698
           KCYF+ ME  +         LS KT+H+ARC+FMH H   S+AKY +R SLILS+T+K++
Sbjct: 280 KCYFVFMESSA---------LSGKTVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLD 330

Query: 699 VNLDTVHVERIEDIPCRNEKGISVCNEDGEILIHTDGTAYISEDLAMKCPRALQSAKYLR 878
           V+L TV+++RI+D P R+E G  V +ED + LI TDGT +ISEDLA++CP  L   KY+ 
Sbjct: 331 VDLSTVNIQRIDDEPGRDEDGHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYMN 390

Query: 879 NKKSELED 902
           N  S++ D
Sbjct: 391 NGNSDVCD 398


>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  236 bits (602), Expect = 6e-60
 Identities = 129/294 (43%), Positives = 182/294 (61%), Gaps = 1/294 (0%)
 Frame = +3

Query: 6    ELEFRKIFLLLNYIGRKKLEDVVSIGDAYKILEMKDYPMENFELQVWNMYGR-ICHVDNE 182
            ELEF+K FLLL+YI  ++L  V +   A +I   KD PM  +E  VW+  GR  C     
Sbjct: 146  ELEFKKAFLLLSYIPGQQLGQVTT---ADEIRLWKDLPMVAYEAAVWDRLGRRYC----P 198

Query: 183  ATDRRKYLDWECGKTHHYHCHVWRDGSFSFKGPYXXXXXXXXXXXXGDENIMIVKFEEHA 362
             TDRR  L W+ GKTH+Y CHV  DGS++FKGP             GDEN++ VKF +  
Sbjct: 199  QTDRRM-LQWDSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGDENVLTVKFADVP 257

Query: 363  NGGSTVFSGNHNNLYAKIAKEGILVGQRRYRFFVFKDGDRKGKKKSPITSDVKCYFIRME 542
               ST +S +    Y +IAK GI++G RRY+FFVFKDG ++ KKK   T  VKCYFIR +
Sbjct: 258  KNSST-YSNDRYFTYKEIAKNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYFIRTD 316

Query: 543  LISPCGVKDHYDLSNKTMHQARCLFMHLHTTPSMAKYASRCSLILSQTMKVEVNLDTVHV 722
              + C +++ Y  + K++H+AR  FMH+H  P++A Y +R SLILS+T  +EV++  +  
Sbjct: 317  STASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTKTLEVDMTGITF 376

Query: 723  ERIEDIPCRNEKGISVCNEDGEILIHTDGTAYISEDLAMKCPRALQSAKYLRNK 884
            + I+DI C ++ G  V +++ +  IH+DGT YISEDLA  CP  +   K LR++
Sbjct: 377  DPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSE 430


>ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
           max]
          Length = 953

 Score =  233 bits (595), Expect = 4e-59
 Identities = 135/297 (45%), Positives = 180/297 (60%), Gaps = 5/297 (1%)
 Frame = +3

Query: 6   ELEFRKIFLLLNYIGRKKLEDVVSIGDAYKILEMKDYPMENFELQVWNMYGRICHVDNEA 185
           ELEFRK FL+L+YIGR+ LE+ ++  DA KI  +KD PM  FE  +W  +G  C  D   
Sbjct: 94  ELEFRKAFLILSYIGRESLENCIT--DA-KIRSLKDLPMAKFEKTIWEDFGEKCIYDQSD 150

Query: 186 TDRRKYLDWECGKTHHYHCHVWRDGSFSFKGPYXXXXXXXXXXXXGDENIMIVKFEEHAN 365
              R+ ++W  G+TH Y C V+ DG+  FKGP             GD+N+++VKF E  +
Sbjct: 151 ---RQLVNWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTHLQKTLGDDNVLLVKFAEDGS 207

Query: 366 GGS-TVFSGNHNNLYAKIAKEGILVGQRRYRFFVFKDGDRKGKKKSPITSDVKCYFIRME 542
           G +    +   N LY K  KEGI VG R YRFFVFKDG  + K+K P +S VKCYF+RM+
Sbjct: 208 GKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGNEEKQKDPTSSTVKCYFVRMQ 267

Query: 543 LISPCGVKD--HYDLSNKTMHQARCLFMHLH-TTPSMAKYASRCSLILSQTMKVEVNLDT 713
             S C   +   Y LSNKT+ +AR LFMH H   P++ KY +R SLILS+T+K+ ++L T
Sbjct: 268 --SGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMARFSLILSKTLKLNIDLTT 325

Query: 714 VHVERIEDIPCRNEKG-ISVCNEDGEILIHTDGTAYISEDLAMKCPRALQSAKYLRN 881
           V V++I D  C++  G I V NE   IL  TDGT +IS DLA+ CP  +     L N
Sbjct: 326 VSVQKIPDEYCKDANGNIMVDNEKPRIL--TDGTGFISRDLALLCPNNVYKGSNLEN 380


>ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| RNA-dependent RNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 992

 Score =  233 bits (593), Expect = 6e-59
 Identities = 128/305 (41%), Positives = 185/305 (60%), Gaps = 1/305 (0%)
 Frame = +3

Query: 6    ELEFRKIFLLLNYIGRKKLEDVVSIGDAYKILEMKDYPMENFELQVWNMYG-RICHVDNE 182
            ELEF+K FLLL+YIG + L + V  GD  +I + KD PM ++E  VWN  G R C     
Sbjct: 145  ELEFKKAFLLLSYIGGESLVEEVISGD--QIRKWKDLPMVSYEAAVWNRLGQRYC----S 198

Query: 183  ATDRRKYLDWECGKTHHYHCHVWRDGSFSFKGPYXXXXXXXXXXXXGDENIMIVKFEEHA 362
              +RR+ L+ + G TH+Y CHV  DGS+ FKG              GD+N++ VKF++  
Sbjct: 199  PKERRRPLEGDSGMTHYYQCHVATDGSYKFKGHLLENTGTHLHKVLGDDNVLTVKFDKVL 258

Query: 363  NGGSTVFSGNHNNLYAKIAKEGILVGQRRYRFFVFKDGDRKGKKKSPITSDVKCYFIRME 542
              G   +  +  + Y  IAK GI+VG RRYRFFVFKDG ++ KKK   T  VKCYFIR +
Sbjct: 259  --GVETYCNDLYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTD 316

Query: 543  LISPCGVKDHYDLSNKTMHQARCLFMHLHTTPSMAKYASRCSLILSQTMKVEVNLDTVHV 722
              +   +++ Y  + K+MH+AR  FMH++T  S+  Y SR SLILS+T  +EV++  +  
Sbjct: 317  STASIDMQNPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTKTLEVDMTGITF 376

Query: 723  ERIEDIPCRNEKGISVCNEDGEILIHTDGTAYISEDLAMKCPRALQSAKYLRNKKSELED 902
            E+I+DI C ++    V +++G+  IH+DGT YISEDLA  CP  +   K +R+   + ++
Sbjct: 377  EQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKN 436

Query: 903  ESLEG 917
             + EG
Sbjct: 437  LNFEG 441