BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00014012
         (1617 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...   256   9e-66
gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]         241   3e-61
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...   238   3e-60
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...   233   8e-59
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   224   7e-56

>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
            At1g65750-like [Vitis vinifera]
          Length = 820

 Score =  256 bits (655), Expect = 9e-66
 Identities = 149/527 (28%), Positives = 247/527 (46%), Gaps = 8/527 (1%)
 Frame = -1

Query: 1617 YWWKASGNNNKGVRWMGWDKMAMAKNKGGLGFRHLYGFNIALLGKHIWNFSRNPSSLVAR 1438
            ++W  S    + +RWM W KM   K  GGLGFR L  FN+ALL K  W F RNP SLV R
Sbjct: 293  FFWD-SNPQCRSIRWMSWGKMCKQKKDGGLGFRKLXDFNLALLAKQGWRFLRNPDSLVTR 351

Query: 1437 LYKARYFPDRHILQASKGTESSFIWTGLWEAKEKLRAGFRWILGDGKDIRIFKDPWLKGK 1258
            +++ARYF +   L A  G+  S++W  +  A+  L+ G  W +  G  ++++ D WL   
Sbjct: 352  IFQARYFRNSSFLNAELGSNPSYMWRSILAAQGLLKRGCYWSIASGTKVQVWGDSWLPDS 411

Query: 1257 NGFCVEDSHL----NVTRDDFVCSYFRPNSKDWDVNKVLQDFHHVDAQLICQTGIPQDGG 1090
            +   +    +     +  D+ +          W  + +   F   DA LI    +P    
Sbjct: 412  SNRLIITPPVAGFDGIKVDELITEGL------WREDFIRDKFMARDADLILSIPLPMSSR 465

Query: 1089 KDRVAWVSTNTGGYTVKSGYQ----FWDNNTMGSNGVPESKAWNKLWKLGLPHKVRTFLW 922
            +D+++W     G YT +SGY     F  +  + ++ V  +  W +LWK+  P K+  F W
Sbjct: 466  EDQISWSFDARGEYTARSGYGALRCFRQSTALVASDVDSNFVWAQLWKVTAPPKILNFAW 525

Query: 921  RFCQNNVPVRKLLRSRGVNLPISCSMCENDIEHLLHIFFDCGFAAECWRRMELDYNMESV 742
            R  +N +P R  L  R V+ P+ C +C +++E  LH   +C  A + W    L     + 
Sbjct: 526  RAARNCLPTRFALTIRHVDTPMCCPICRSELETTLHALVECVAARDVWDESGLAMLQGNF 585

Query: 741  EFAPSWLLERINTDKAEVVEKIATVLWGIWFARNQKLWEGKNITAAMAMEISRKQIVDWQ 562
                 WL          V  K   V WG+W+ RN  +W G+   +   +      +  W 
Sbjct: 586  GSFVDWLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRIWHSQQVVNGCFTMLESW- 644

Query: 561  TAMSRKANQKAKTSKTITAARITKWEPPDMGQMKLNVDASLFAGDKFFSVGMLIRKDDGS 382
                  AN+   T+ T+ +   +KW+ PD G +K+NVD ++F  DK  ++G + R   G 
Sbjct: 645  ----FHANETLATAVTVPSYS-SKWQKPDYGWIKINVDGAVFP-DK-GAIGAVFRDHQGR 697

Query: 381  FVRGKSMKFMGEVSVLEAEVRGIQEALKWVFELGLQGVVIESDSELAVKAMKNETSYYLE 202
            F+ G +  F  +      E  G++E L W+ E     +V+E+D    V+A+++++     
Sbjct: 698  FMGGFAKPFPHQTLPKVVEALGVREVLSWIHERSRSRIVVETDCLRVVQAIQHKSCPNTS 757

Query: 201  IRYCVDSCRRQLKHRADVSICHVKKQANKGAHLMARVPVSLNSFIVF 61
              + +  C   L+H  DV + + ++ AN  AH +A    S  S  ++
Sbjct: 758  FGFIIVDCLDVLQHLVDVQVVYARRSANSAAHCLANGACSFTSLHIW 804


>gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]
          Length = 593

 Score =  241 bits (616), Expect = 3e-61
 Identities = 151/521 (28%), Positives = 236/521 (45%), Gaps = 10/521 (1%)
 Frame = -1

Query: 1617 YWWKASGNNNKGVRWMGWDKMAMAKNKGGLGFRHLYGFNIALLGKHIWNFSRNPSSLVAR 1438
            ++W    N +K + W  W+K+  +K  GGLGFR L  FN A+L K  W     P+SL A 
Sbjct: 65   FYWGGDRNGSK-MHWRSWEKLCRSKRNGGLGFRRLKNFNRAMLAKQGWRLLTLPNSLAAT 123

Query: 1437 LYKARYFPDRHILQASKGTESSFIWTGLWEAKEKLRAGFRWILGDGKDIRIFKDPWLKGK 1258
            + +A+Y+P +  L+ S    SS+ W  + +  + L+ G  W +G G  +R + DPW+ G 
Sbjct: 124  ILRAKYYPRKSPLEISSSPYSSYTWRSILKGSQLLQKGIEWRIGQGNTVRTWSDPWIPGS 183

Query: 1257 N----GFCVEDSHLNVTRDDFVCSYFRPNSKDWDVNKVLQDFHHVDAQLICQTGIPQDGG 1090
            +     +    S L     DF+       +  W+ N +   F   D   I Q  +     
Sbjct: 184  DTGLPKYHSPGSDLYTHVSDFI------QNGGWNENLLRLCFEEEDVTRILQIRLSLRRP 237

Query: 1089 KDRVAWVSTNTGGYTVKSGYQ-----FWDNNTMGSNGVPESKAWNKLWKLGLPHKVRTFL 925
             D V W     G YTV+SGY      +W  N          + W   W L  P +++T L
Sbjct: 238  LDMVRWKFIKDGEYTVRSGYYIDFNCWWHENYATPLTHAGEERWKTCWGLRCPPRIKTLL 297

Query: 924  WRFCQNNVPVRKLLRSRGVNLPISCSMCENDIEHLLHIFFDCGFAAECWRRMELDYNMES 745
            WR   NN+ VR  L  RG+ +   C  C    E   H+FF C +  + W+ + +   +ES
Sbjct: 298  WRLIDNNLSVRTNLTRRGIQVDEVCPCCAGPSETAAHLFFCCPYTLDIWKEVNVQIQVES 357

Query: 744  VEFAPSWLLERINTDKAEVVEKIATVLWGIWFARNQKLWE-GKNITAAMAMEISRKQIVD 568
             E     +   +N        + A  LW IW  RN  ++  G+ I     +E   K    
Sbjct: 358  SENILLAIDSLLNIRDPVEQSRRAATLWIIWRVRNSIVFRTGEEIVICKELE---KGFRF 414

Query: 567  WQTAMSRKANQKAKTSKTITAARITKWEPPDMGQMKLNVDASLFAGDKFFSVGMLIRKDD 388
            WQ  M  + N   +      A R +KW  P  G  K+NVDA L A ++   VG+++R D 
Sbjct: 415  WQDFMDTEGNPTVR-----GAPRTSKWNAPTAGFYKINVDAGLRA-ERGGQVGIVVRDDT 468

Query: 387  GSFVRGKSMKFMGEVSVLEAEVRGIQEALKWVFELGLQGVVIESDSELAVKAMKNETSYY 208
            G+FV   +  F   V     E + +   L++   LGL+ V +ESD    V  +    +  
Sbjct: 469  GAFVMATTRSFPNLVHPTLLEGQAVYTGLEFANALGLERVELESDCLPVVMQLSKGYTDR 528

Query: 207  LEIRYCVDSCRRQLKHRADVSICHVKKQANKGAHLMARVPV 85
             ++   +D C+  L +   V I HV+++AN+ AH MA++ +
Sbjct: 529  SDLSNIIDDCKMLLSNFQQVRIAHVRREANQAAHEMAKMTI 569


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score =  238 bits (608), Expect = 3e-60
 Identities = 147/510 (28%), Positives = 243/510 (47%), Gaps = 1/510 (0%)
 Frame = -1

Query: 1617 YWWKASGNNNKGVRWMGWDKMAMAKNKGGLGFRHLYGFNIALLGKHIWNFSRNPSSLVAR 1438
            +WW   G+  K + W+ W+KM   K  GG+GF+ L  FN ALLGK +W    N  SL++R
Sbjct: 832  FWWGGKGDERK-MHWLSWEKMCKPKCMGGMGFKDLAVFNDALLGKQVWRLLHNKESLLSR 890

Query: 1437 LYKARYFPDRHILQASKGTESSFIWTGLWEAKEKLRAGFRWILGDGKDIRIFKDPWLKGK 1258
            +  A+Y+P   +  A  G   S+ W  +W AK  +  G  W +GDG  I I+  PW+  +
Sbjct: 891  VMSAKYYPHGDVRYARLGYSHSYSWRSIWGAKSLVLEGLIWRVGDGTKIDIWSAPWVGDE 950

Query: 1257 NGFCVEDSHLNVTRDDFVCSYFRPNSKDWDVNKVLQDFHHVDAQLICQTGIPQDGGKDRV 1078
             G  ++ +   V   + V        K+W+V  + + F+  D Q I    +     +D +
Sbjct: 951  EGRFIKSA--RVEGLEVVGDLMDVERKEWNVELIERHFNERDQQCILAIPLSTRCLQDEL 1008

Query: 1077 AWVSTNTGGYTVKSGYQFWDNNTMGSNGVPESKAWNKLWKLGLPHKVRTFLWRFCQNNVP 898
             W  +  G Y+VK+ Y        G N     + WN LW L +  KVR FLWR C +++P
Sbjct: 1009 TWAYSKDGTYSVKTAYML----GKGGNLDDFHRVWNILWSLNVSPKVRHFLWRACTSSLP 1064

Query: 897  VRKLLRSRGVNLPISCSMCENDIEHLLHIFFDCGFAAECWRRMELDYNMESVE-FAPSWL 721
            VRK+L+ R +     C  C  + E   H+F+ C  + + W  +     +  +E  A    
Sbjct: 1065 VRKVLQRRHLIDEAGCPCCAREDETQFHLFYRCPMSLKLWEELGSYILLPGIEDEAMCDT 1124

Query: 720  LERINTDKAEVVEKIATVLWGIWFARNQKLWEGKNITAAMAMEISRKQIVDWQTAMSRKA 541
            L R +   A+VV+K   +LW +W  RN++++E  +  A +  +   +Q+ D+    + K 
Sbjct: 1125 LVRWSQMDAKVVQKGCYILWNVWVERNRRVFEHTSQPATVVGQRIMRQVEDFNN-YAVKI 1183

Query: 540  NQKAKTSKTITAARITKWEPPDMGQMKLNVDASLFAGDKFFSVGMLIRKDDGSFVRGKSM 361
                ++S  ++ +R   W  P +G +KLN DASL A + +  +G++ R  +G      + 
Sbjct: 1184 YGGMRSSAALSPSR---WYAPPVGAIKLNTDASL-AEEGWVGLGVIARDSEGKVCFAATR 1239

Query: 360  KFMGEVSVLEAEVRGIQEALKWVFELGLQGVVIESDSELAVKAMKNETSYYLEIRYCVDS 181
            +         AE + I  A +     G   V+ ESDS +A K +     ++ ++   +  
Sbjct: 1240 RVRAYWPPEVAECKAIYMATRLAQAHGYGDVIFESDSLVATKRLTKAAIFFSDLDAILGD 1299

Query: 180  CRRQLKHRADVSICHVKKQANKGAHLMARV 91
                    + VS  HVK+  N  AH +ARV
Sbjct: 1300 ILSMCNAFSSVSFSHVKRDGNTVAHNLARV 1329


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score =  233 bits (595), Expect = 8e-59
 Identities = 153/519 (29%), Positives = 239/519 (46%), Gaps = 11/519 (2%)
 Frame = -1

Query: 1617 YWWKASGNNNKGVRWMGWDKMAMAKNKGGLGFRHLYGFNIALLGKHIWNFSRNPSSLVAR 1438
            +WW   G   KG+ W  W  +  +K  GGLGFR L  FN ALLGK  W     P SLVAR
Sbjct: 1113 FWWGKEGG--KGIHWRRWSDLCFSKKDGGLGFRDLSLFNQALLGKQGWRLMMYPDSLVAR 1170

Query: 1437 LYKARYFPDRHILQASKGTESSFIWTGLWEAKEKLRAGFRWILGDGKDIRIFKDPWLKGK 1258
            + KA+YFP    ++A  G+  S++W      +E LR G RW +GDGK++R+F DPW+ G 
Sbjct: 1171 MLKAKYFPWDDFMEAELGSSPSYLWRSFLWGRELLRKGVRWRIGDGKEVRVFIDPWVPGL 1230

Query: 1257 NGF---CVEDSHLNVTRDDFVCSYFRPNSKDWDVNKVLQDFHHVDAQLICQTGIPQDGGK 1087
              F     + + L +   D +      N+  W++  +   F   + + I    +      
Sbjct: 1231 PSFRPILRQGAPLFLRVSDLL-----HNNGGWNMEALNYWFTDDECEAISSITVGATRRP 1285

Query: 1086 DRVAWVSTNTGGYTVKSGYQFW----DNNTMGSNGV-PESKAWNKLWKLGLPHKVRTFLW 922
            D   W     G YTVKSGY  W    +N     N V      W  LWKL LP K+  FLW
Sbjct: 1286 DVYMWNYCKNGRYTVKSGY--WLACEENREEAINIVLAPRNFWKHLWKLKLPPKINHFLW 1343

Query: 921  RFCQNNVPVRKLLRSRGVNLPISCSMCENDIEHLLHIFFDCGFAAECWRRMELDYNMESV 742
            R     +P  ++L  + +    SC  C+   E  +H  + C      + R      + S 
Sbjct: 1344 RCSMGFIPCMEVLLWKHIAHSASCFRCQQGRESPVHATWGCSCCVAVFERAGFYSKLSSG 1403

Query: 741  EFAPSW---LLERINTDKAEVVEKIATVLWGIWFARNQKLWEGKNITAAMAMEISRKQIV 571
            +F PS+   L    +T   E ++  A +LW  W  RN    +G  + + +  E   K + 
Sbjct: 1404 QF-PSFIHLLHHAFSTLDKEELQLFAVLLWLNWHERNNCYHKGAVVPSDIIYENGVKFLK 1462

Query: 570  DWQTAMSRKANQKAKTSKTITAARITKWEPPDMGQMKLNVDASLFAGDKFFSVGMLIRKD 391
             ++ A+  +A  + K  + +    + +W+ P  GQ+K+N D +    D+ F  G +IR +
Sbjct: 1463 CFKEALGCRAGVEVKAVEEVVPGSLRRWQAPSSGQLKVNCDGAANFKDRCFGGGTIIRDE 1522

Query: 390  DGSFVRGKSMKFMGEVSVLEAEVRGIQEALKWVFELGLQGVVIESDSELAVKAMKNETSY 211
             GS +      F   VS L AE+  I+  L  V E  L+ +++ESD   A+  + ++   
Sbjct: 1523 FGSLIVAGGKNFQHPVSSLVAELLAIKVGLDLVVERRLRNIMVESDCLEAIHLLNSKERC 1582

Query: 210  YLEIRYCVDSCRRQLKHRADVSICHVKKQANKGAHLMAR 94
                   V+  +  +      SI HV+++ N  AH +A+
Sbjct: 1583 LAPEGGLVEDIQNTMALVNISSIYHVRREGNTAAHAIAK 1621


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  224 bits (570), Expect = 7e-56
 Identities = 144/532 (27%), Positives = 248/532 (46%), Gaps = 13/532 (2%)
 Frame = -1

Query: 1617 YWWKASGNNNKGVRWMGWDKMAMAKNKGGLGFRHLYGFNIALLGKHIWNFSRNPSSLVAR 1438
            +WW +S  N K + W  WD +   K+ GGLGFR L+ FN +LL K  W       +L+ R
Sbjct: 828  FWWGSSDTNRK-MHWHSWDTLCYPKSMGGLGFRDLHCFNQSLLAKQAWRLCTGDQTLLYR 886

Query: 1437 LYKARYFPDRHILQASKGTESSFIWTGLWEAKEKLRAGFRWILGDGKDIRIFKDPWLKGK 1258
            L +ARYF    +L+A +G   SF W  +W +K  L  G +W +G G+ IR+++D W+ G+
Sbjct: 887  LLQARYFKSSELLEARRGYNPSFTWRSIWGSKSLLLEGLKWCVGSGERIRVWEDAWILGE 946

Query: 1257 NGFCVEDSHLNVTRDDFVCSYFRPNSKDWDVNKVLQDFHHVDAQLICQTGIPQDGGKDRV 1078
                V     +   D  VC         W++  V Q F   + +L+    + +    D  
Sbjct: 947  GAHMVPTPQADSNLDLKVCDLIDVARGAWNIESVQQTFVEEEWELVLSIPLSRFLPDDHR 1006

Query: 1077 AWVSTNTGGYTVKSGYQFWDNNTMGS----NGVPESKAWNKLWKLGLPHKVRTFLWRFCQ 910
             W  +  G ++V+S Y       + +    +G  E++ W ++W+L  P K+  FLWR C+
Sbjct: 1007 YWWPSRNGIFSVRSCYWLGRLGPVRTWQLQHGERETELWRRVWQLQGPPKLSHFLWRACK 1066

Query: 909  NNVPVRKLLRSRGVNLPISCSMCENDIEHLLHIFFDCGFAAECWR-----RMELDYNMES 745
             ++ V+  L SR +++  +CS+C +  E + H  FDC FA   W+      + ++  + S
Sbjct: 1067 GSLAVKGRLFSRHISVDATCSVCGDPDESINHALFDCTFARAIWQVSGFASLMMNAPLSS 1126

Query: 744  VEFAPSWLLERINTDKAEVVEKIATVLWGIWFARNQKLWEGKNITAAMAMEISRKQIVD- 568
                  WL +       E    + + +W  WF RN+ ++E +   A +  +   K + D 
Sbjct: 1127 FSERLEWLAKHAT---KEEFRTMCSFMWAGWFCRNKLIFENELSDAPLVAKRFSKLVADY 1183

Query: 567  --WQTAMSRKANQKAKTSKTITAARITKWEPPDMGQMKLNVDASLFAGDKFFSVGMLIRK 394
              +  ++ R +     +S          W PP  G  K+N DA L    +   +G++IR 
Sbjct: 1184 CEYAGSVFRGSGGGCGSS--------ALWSPPPTGMFKVNFDAHLSPNGE-VGLGVVIRA 1234

Query: 393  DDGSFVRGKSMKFMGEVSVLEAEVRGIQEALKWVFELGLQGVVIESDSELAVKAMKNETS 214
            +DG        +     + + AE      A++    LG   +V+E D+ + + A+K++  
Sbjct: 1235 NDGGIKMLGVKRVAARWTAVMAEAMAALFAVEVAHRLGFGRIVLEGDAMMVINAVKHKCE 1294

Query: 213  YYLEIRYCVDSCRRQLKHRADV-SICHVKKQANKGAHLMARVPVSLNSFIVF 61
                + + + +    L    DV S+ HV++  N  AHL+AR     NS IV+
Sbjct: 1295 GVAPM-FRIFNDISSLGACLDVFSVSHVRRAGNTVAHLLARWCCDCNSEIVW 1345