BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00013456
         (752 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib...   240   2e-61
emb|CAN76892.1| hypothetical protein VITISV_005356 [Vitis vinifera]   237   2e-60
gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptas...   222   6e-56
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   218   8e-55
gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago t...   211   2e-52

>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
           At1g65750-like [Vitis vinifera]
          Length = 820

 Score =  240 bits (613), Expect = 2e-61
 Identities = 116/250 (46%), Positives = 160/250 (64%)
 Frame = +2

Query: 2   LIHGCKVARGAPSVSHLLFADDCYFFFRASQTEAGVMKDILNRYERISGQAVNYAKSTIV 181
           ++HGC VARGA +V HL FADD Y FF+A+++E+  +K IL RY+ +SGQ +N  KS + 
Sbjct: 131 VLHGCSVARGASTVLHLFFADDLYLFFKATESESRSLKQILLRYQNLSGQEINLNKSALT 190

Query: 182 FSPNTNPEDKSLVCDRLGVSEVSTPGKYLGMPMHVGRNKGEVFGFLSDRIRQKLQGWMNK 361
           FS NT+   K  +C  L V E + PG YLGMP  VG+NK ++F F+  ++  ++Q W  +
Sbjct: 191 FSRNTDDVVKRGICSILQVEEXADPGIYLGMPAVVGKNKRQLFEFVRRKVWNRIQNWNGR 250

Query: 362 ELSKSGKITLLKSAAQTIPNFWMSLFLIPSGITEAIERLMNGFFWGRDSNRGGISWLAWE 541
            LS++GK   LK+ AQ+IP + M L L+P  +   IE +MNGFFW  +     I W++W 
Sbjct: 251 RLSRAGKEICLKTVAQSIPTYVMQLLLLPKDLCRDIESMMNGFFWDSNPQCRSIRWMSWG 310

Query: 542 KLCIPXXXXXXXXXXXXFFNTSMLAKQGWRILNNINPLVTSIMKGRYFPNTDFLNVELGK 721
           K+C               FN ++LAKQGWR L N + LVT I + RYF N+ FLN ELG 
Sbjct: 311 KMCKQKKDGGLGFRKLXDFNLALLAKQGWRFLRNPDSLVTRIFQARYFRNSSFLNAELGS 370

Query: 722 NPSYVWRSII 751
           NPSY+WRSI+
Sbjct: 371 NPSYMWRSIL 380


>emb|CAN76892.1| hypothetical protein VITISV_005356 [Vitis vinifera]
          Length = 1793

 Score =  237 bits (605), Expect = 2e-60
 Identities = 113/250 (45%), Positives = 158/250 (63%)
 Frame = +2

Query: 2    LIHGCKVARGAPSVSHLLFADDCYFFFRASQTEAGVMKDILNRYERISGQAVNYAKSTIV 181
            ++HGC VARGAP VSHL FAD+ Y FF+A+++E+  +K IL RY+ +SGQ +N  K  + 
Sbjct: 1218 VLHGCSVARGAPXVSHLFFADBSYLFFKATESESRSLKQILLRYQNLSGQEINLNKXALT 1277

Query: 182  FSPNTNPEDKSLVCDRLGVSEVSTPGKYLGMPMHVGRNKGEVFGFLSDRIRQKLQGWMNK 361
            FS NT+   K  +C  L V E + PG YLGMP  VG+NK ++F F+  ++  ++Q W  +
Sbjct: 1278 FSRNTDDVVKRGICSILQVEEQADPGIYLGMPAVVGKNKRQLFEFVRRKVWNRIQNWNGR 1337

Query: 362  ELSKSGKITLLKSAAQTIPNFWMSLFLIPSGITEAIERLMNGFFWGRDSNRGGISWLAWE 541
             LS++GK   LK+ AQ+IP + M L L+P  +   IE +MN FFW  +     I W++W 
Sbjct: 1338 RLSRAGKEICLKTVAQSIPTYVMQLLLLPKDLCRDIESMMNXFFWDSNPQXRSIRWMSWX 1397

Query: 542  KLCIPXXXXXXXXXXXXFFNTSMLAKQGWRILNNINPLVTSIMKGRYFPNTDFLNVELGK 721
            K+C               FN ++LAKQG R L N++ LVT I + RYF N+ FLN ELG 
Sbjct: 1398 KMCKQKKDGGLGFRKLEDFNLALLAKQGXRFLQNLDSLVTIIFQARYFRNSSFLNAELGS 1457

Query: 722  NPSYVWRSII 751
            NPSY+WRSI+
Sbjct: 1458 NPSYMWRSIL 1467


>gb|ABD33126.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 653

 Score =  222 bits (566), Expect = 6e-56
 Identities = 110/250 (44%), Positives = 157/250 (62%), Gaps = 1/250 (0%)
 Frame = +2

Query: 2    LIHGCKVARGAPSVSHLLFADDCYFFFRASQTEAGVMKDILNRYERISGQAVNYAKSTIV 181
            ++HG KV + AP+VSHLLFADD + FFRA++ E   +KDIL+ Y   S Q +N  KS I 
Sbjct: 255  ILHGVKVCKRAPTVSHLLFADDSFLFFRANENETRALKDILDTYANASDQLINMQKSEIY 314

Query: 182  FSPNTNPEDKSLVCDRLGVSEVSTPGKYLGMPMHVGRNKGEVFGFLSDRIRQKLQGWMNK 361
            FS N     K+ + + L VSE     KYLG+P  +GR+K  +F ++ DRI  ++ G  +K
Sbjct: 315  FSRNVPVTKKNTLSNMLWVSEGIGIRKYLGLPSMIGRSKKSIFNYIKDRIWNRISGLSSK 374

Query: 362  ELSKSGKITLLKSAAQTIPNFWMSLFLIPSGITEAIERLMNGFFWG-RDSNRGGISWLAW 538
             LS++GK  L+KS AQ IP++ MS+FL+P  I + IE+++N F+WG ++  RGGI W++W
Sbjct: 375  MLSQAGKEVLIKSVAQAIPSYCMSVFLLPHSIADDIEKMLNSFWWGMKNEGRGGIRWMSW 434

Query: 539  EKLCIPXXXXXXXXXXXXFFNTSMLAKQGWRILNNINPLVTSIMKGRYFPNTDFLNVELG 718
            E+L +              F+ +M  KQ W  L N + +V+ I K +YF N +FL   LG
Sbjct: 435  ERLTMRKEWGGMGFRHIHGFDLAMSGKQCWNFLTNPDAMVSRIFKAKYFTNENFLGASLG 494

Query: 719  KNPSYVWRSI 748
             NPSYVWRSI
Sbjct: 495  HNPSYVWRSI 504


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  218 bits (556), Expect = 8e-55
 Identities = 106/248 (42%), Positives = 150/248 (60%)
 Frame = +2

Query: 5    IHGCKVARGAPSVSHLLFADDCYFFFRASQTEAGVMKDILNRYERISGQAVNYAKSTIVF 184
            IHG ++ RGAP VSHL FADD   F +AS  E  ++ DI+++YER SGQ VN +K+ +VF
Sbjct: 667  IHGAQICRGAPVVSHLFFADDSILFTKASVQECSMVADIISKYERASGQQVNLSKTEVVF 726

Query: 185  SPNTNPEDKSLVCDRLGVSEVSTPGKYLGMPMHVGRNKGEVFGFLSDRIRQKLQGWMNKE 364
            S + + E +S + + LGV EV    KYLG+P  +GR+K   F  + +RI +KLQGW  K 
Sbjct: 727  SRSVDRERRSAIVNVLGVKEVDRQEKYLGLPTIIGRSKKVTFACIKERIWKKLQGWKEKL 786

Query: 365  LSKSGKITLLKSAAQTIPNFWMSLFLIPSGITEAIERLMNGFFWGRDSNRGGISWLAWEK 544
            LS+ GK  L+KS AQ IP + MS+F +PSG+ + I  L+  F+WG       + W +W+ 
Sbjct: 787  LSRPGKEVLIKSVAQAIPTYMMSVFSLPSGLIDEIHSLLARFWWGSSDTNRKMHWHSWDT 846

Query: 545  LCIPXXXXXXXXXXXXFFNTSMLAKQGWRILNNINPLVTSIMKGRYFPNTDFLNVELGKN 724
            LC P             FN S+LAKQ WR+      L+  +++ RYF +++ L    G N
Sbjct: 847  LCYPKSMGGLGFRDLHCFNQSLLAKQAWRLCTGDQTLLYRLLQARYFKSSELLEARRGYN 906

Query: 725  PSYVWRSI 748
            PS+ WRSI
Sbjct: 907  PSFTWRSI 914


>gb|ABO80476.1| RNA-directed DNA polymerase , related [Medicago truncatula]
          Length = 405

 Score =  211 bits (536), Expect = 2e-52
 Identities = 104/244 (42%), Positives = 147/244 (60%)
 Frame = +2

Query: 5   IHGCKVARGAPSVSHLLFADDCYFFFRASQTEAGVMKDILNRYERISGQAVNYAKSTIVF 184
           IHG KV RGAP VSHLLFAD+C+ F RA+  EA  +  IL  YE  SGQ +N +KS + F
Sbjct: 52  IHGVKVCRGAPVVSHLLFADNCFLFCRANVVEAQRLLTILKTYEAASGQEINLSKSEVFF 111

Query: 185 SPNTNPEDKSLVCDRLGVSEVSTPGKYLGMPMHVGRNKGEVFGFLSDRIRQKLQGWMNKE 364
           S N +   +  +   +GV  V   GKYLG+P  + R+K  VF F+ D I +++  W  + 
Sbjct: 112 SRNMSGAAQEDLSRIIGVRHVMGTGKYLGLPSMIDRDKWSVFSFIKDSIWKRINVWRGRA 171

Query: 365 LSKSGKITLLKSAAQTIPNFWMSLFLIPSGITEAIERLMNGFFWGRDSNRGGISWLAWEK 544
           LSK+GK  ++KS  Q+IP++ MS++L+PS + + IE+++N F+WG  SN  GI W+AWE 
Sbjct: 172 LSKAGKEVMIKSVLQSIPSYIMSIYLLPSSVIDDIEKMVNAFWWGGRSNNRGIKWMAWEH 231

Query: 545 LCIPXXXXXXXXXXXXFFNTSMLAKQGWRILNNINPLVTSIMKGRYFPNTDFLNVELGKN 724
           +  P             FN +M+AKQGW +L+    LV  + K RYFP + FL  +L  N
Sbjct: 232 MACPKEFGGMGFRNFKAFNIAMVAKQGWSLLSTPESLVARVFKSRYFPRSSFLGAKLVGN 291

Query: 725 PSYV 736
              V
Sbjct: 292 GQQV 295