BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00013408
         (731 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512787.1| pentatricopeptide repeat-containing protein,...   303   3e-80
ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containi...   285   9e-75
ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containi...   276   2e-72
ref|XP_003624556.1| Pentatricopeptide repeat-containing protein ...   271   1e-70
ref|NP_189297.1| pentatricopeptide repeat-containing protein [Ar...   270   2e-70

>ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547798|gb|EEF49290.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 480

 Score =  303 bits (775), Expect = 3e-80
 Identities = 143/205 (69%), Positives = 172/205 (83%)
 Frame = -1

Query: 731 DVARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQLENVKPNEFTLVSLLIAC 552
           D AR  F++MP+RNVVSWT MI+GY +N +PQEAFELF RMQL NV+PN FTLV LL AC
Sbjct: 213 DTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANVRPNGFTLVGLLRAC 272

Query: 551 TELGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSKCGSLDDAKKVFREMEKKSLATWN 372
           TELGSL+LG  +H++AL++GFK+G +LGTALIDMYSKCGS++DAKKVF EM+KKSLATWN
Sbjct: 273 TELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSIEDAKKVFEEMQKKSLATWN 332

Query: 371 SMITSLGVHGCGEEALSLFTDMEMANVKPDAITFVGVLSACVHINNLEIGVKLFNYMNER 192
           SMITSLGVHG G+EAL+LF  ME ANV+PDAITFVGVL ACV+ NN+E G + F YM E 
Sbjct: 333 SMITSLGVHGFGKEALALFAQMEEANVRPDAITFVGVLFACVNTNNVEAGYRYFKYMTEH 392

Query: 191 YGIVPIREHYSCMLELHNRESMTEE 117
           YGI P+ EHY+CM+EL+ R +M  E
Sbjct: 393 YGITPMLEHYTCMIELYTRAAMLNE 417



 Score =  122 bits (306), Expect = 8e-26
 Identities = 69/212 (32%), Positives = 107/212 (50%), Gaps = 33/212 (15%)
 Frame = -1

Query: 731 DVARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQLENVKPNEFTLVSLLIAC 552
           D A ++F+Q+   +  +W  MI  Y  NG  Q+A  L+  M  E   P++FT   ++ AC
Sbjct: 81  DYATLIFDQIQNPHTFTWNFMIRAYNYNGNSQQALLLYNLMICEGFSPDKFTFPFVIKAC 140

Query: 551 TELGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSKCGSLDDAKKVFREMEKKSLATWN 372
            +  +L  G  VH FA+K+GF   T+L   L+D+Y KCG LD A+K+F +M  +S+ +W 
Sbjct: 141 LDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLFDKMAVRSVVSWT 200

Query: 371 SMITSLGVHGCGE---------------------------------EALSLFTDMEMANV 291
           + +   G+  CGE                                 EA  LF  M++ANV
Sbjct: 201 TFVA--GLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRMQLANV 258

Query: 290 KPDAITFVGVLSACVHINNLEIGVKLFNYMNE 195
           +P+  T VG+L AC  + +LE+G ++  Y  E
Sbjct: 259 RPNGFTLVGLLRACTELGSLELGRRIHEYALE 290


>ref|XP_003553320.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
           chloroplastic-like [Glycine max]
          Length = 474

 Score =  285 bits (728), Expect = 9e-75
 Identities = 139/222 (62%), Positives = 177/222 (79%)
 Frame = -1

Query: 731 DVARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQLENVKPNEFTLVSLLIAC 552
           D AR LFEQMP +NVVSWT +IDGY ++ +P EAF+LF RMQ +NV+PNE+TLVSL+ AC
Sbjct: 205 DTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNEYTLVSLVRAC 264

Query: 551 TELGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSKCGSLDDAKKVFREMEKKSLATWN 372
           TE+GSLKLG  VHDFALK+GF+L  +LGTALIDMYSKCG+LDDA+ VF  M+ ++LATWN
Sbjct: 265 TEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGNLDDARTVFDMMQMRTLATWN 324

Query: 371 SMITSLGVHGCGEEALSLFTDMEMANVKPDAITFVGVLSACVHINNLEIGVKLFNYMNER 192
           +MITSLGVHG  +EALS+F +ME AN  PDAITFVGVLSACV++N+LE+  K FN M + 
Sbjct: 325 TMITSLGVHGYRDEALSIFEEMEKANEVPDAITFVGVLSACVYMNDLELAQKYFNLMTDH 384

Query: 191 YGIVPIREHYSCMLELHNRESMTEEAHLN**SSE*SDNSCEL 66
           YGI PI EHY+CM+E+H R    +E +++  + E + +  EL
Sbjct: 385 YGITPILEHYTCMVEIHTRAIKLDEIYMSGNTMEANHDVAEL 426



 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 31/205 (15%)
 Frame = -1

Query: 725 ARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQLENVKPNEFTLVSLLIACTE 546
           A ++F+Q+   +V +W  MI  Y   G P+ AF LF  M  +   P++FT   ++ AC  
Sbjct: 75  ATLVFDQLNAPDVFTWNVMIRAYTIGGSPKMAFLLFKAMLYQGFAPDKFTYPCVINACMA 134

Query: 545 LGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSKC------------------------ 438
             +L +G   H  A+K GF    Y+   ++++Y KC                        
Sbjct: 135 YNALDVGRVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGWNVFDKMCVRNVFAWTTV 194

Query: 437 -------GSLDDAKKVFREMEKKSLATWNSMITSLGVHGCGEEALSLFTDMEMANVKPDA 279
                  G LD A+++F +M  K++ +W ++I     H    EA  LF  M+  NV+P+ 
Sbjct: 195 IAGFVACGKLDTARELFEQMPSKNVVSWTAIIDGYVKHKQPIEAFDLFERMQADNVRPNE 254

Query: 278 ITFVGVLSACVHINNLEIGVKLFNY 204
            T V ++ AC  + +L++G ++ ++
Sbjct: 255 YTLVSLVRACTEMGSLKLGRRVHDF 279


>ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
           chloroplastic-like [Glycine max]
          Length = 483

 Score =  276 bits (707), Expect = 2e-72
 Identities = 140/223 (62%), Positives = 175/223 (78%), Gaps = 1/223 (0%)
 Frame = -1

Query: 731 DVARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQ-LENVKPNEFTLVSLLIA 555
           D AR LFEQMP +NVVSWT MIDGY ++ +P EAF LF RMQ ++NV+PNE+TLVSL+ A
Sbjct: 206 DTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLVRA 265

Query: 554 CTELGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSKCGSLDDAKKVFREMEKKSLATW 375
           CTE+GSLKLG  VHDFALK+GF+L  +LGTALIDMYSKCG LDDA+ VF  M+ ++LATW
Sbjct: 266 CTEMGSLKLGRRVHDFALKNGFELEPFLGTALIDMYSKCGYLDDARTVFDMMQVRTLATW 325

Query: 374 NSMITSLGVHGCGEEALSLFTDMEMANVKPDAITFVGVLSACVHINNLEIGVKLFNYMNE 195
           N+MITSLGVHG  +EALSLF +ME AN  PDAITFVGVLSACV++N+LE+  K FN M +
Sbjct: 326 NTMITSLGVHGYRDEALSLFDEMEKANEVPDAITFVGVLSACVYMNDLELAQKYFNLMTD 385

Query: 194 RYGIVPIREHYSCMLELHNRESMTEEAHLN**SSE*SDNSCEL 66
            YGI PI EHY+CM+E++ R    +E + +  + E + +  EL
Sbjct: 386 HYGITPILEHYTCMVEIYTRAIELDENYTSGNTMEANHDVAEL 428



 Score = 92.8 bits (229), Expect = 6e-17
 Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 34/208 (16%)
 Frame = -1

Query: 725 ARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQLENVKPNEFTLVSLLIACTE 546
           A ++F+Q+   +V +W  MI  +   G P+ A  LF  M  +   P++FT   ++ AC  
Sbjct: 76  ATLVFDQLNAPDVFTWNVMIRAFTIGGSPKMALLLFKAMLCQGFAPDKFTYPFVINACMA 135

Query: 545 LGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSKCGSLDDAKKVFREMEKKSLATWNSM 366
             +L LG   H  A+K GF    Y+   ++++Y KC ++DD +KVF +M  +++  W ++
Sbjct: 136 SSALDLGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVFAWTTV 195

Query: 365 ITSLGVHGCGE---------------------------------EALSLFTDMEMA-NVK 288
           I+  G+  CG+                                 EA +LF  M+   NV+
Sbjct: 196 IS--GLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVR 253

Query: 287 PDAITFVGVLSACVHINNLEIGVKLFNY 204
           P+  T V ++ AC  + +L++G ++ ++
Sbjct: 254 PNEYTLVSLVRACTEMGSLKLGRRVHDF 281


>ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355499571|gb|AES80774.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 476

 Score =  271 bits (693), Expect = 1e-70
 Identities = 131/205 (63%), Positives = 162/205 (79%)
 Frame = -1

Query: 731 DVARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQLENVKPNEFTLVSLLIAC 552
           D AR +FE++P +NVVSWT MI+GY +N  P +AF+LF RM ++NV+PNEFTLVSL+ AC
Sbjct: 202 DTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVRPNEFTLVSLIKAC 261

Query: 551 TELGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSKCGSLDDAKKVFREMEKKSLATWN 372
           T+LGSLKLG  +HDFALK+GF+LG +LGTAL+DMYSKCGSLD A KVF  ME ++LATWN
Sbjct: 262 TDLGSLKLGRRMHDFALKNGFELGPFLGTALVDMYSKCGSLDAAVKVFGLMEVRNLATWN 321

Query: 371 SMITSLGVHGCGEEALSLFTDMEMANVKPDAITFVGVLSACVHINNLEIGVKLFNYMNER 192
           +M+TS GVHG G E L LF +ME A V PDAITFVGVLSACV IN+LE+G K F+ M E 
Sbjct: 322 TMLTSFGVHGFGNEVLDLFKEMEKAGVVPDAITFVGVLSACVQINDLELGQKYFSLMTEH 381

Query: 191 YGIVPIREHYSCMLELHNRESMTEE 117
           Y + PI EHY+CM+ L+ R +   E
Sbjct: 382 YSLTPILEHYTCMVGLYTRANELNE 406



 Score = 90.5 bits (223), Expect = 3e-16
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 32/208 (15%)
 Frame = -1

Query: 731 DVARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQLENVKPNEFTLVSLLIAC 552
           D A ++F+Q+   ++ +W  MI  Y  +G PQ++  LF  M      P++FT   ++ AC
Sbjct: 69  DYASLVFDQLNDPDIFTWNVMIRAYNTSGLPQKSIFLFKDMICCGFLPDKFTYPFVINAC 128

Query: 551 TELGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSK----------------------- 441
              G +  G   H  A+K GF    Y+   ++++Y K                       
Sbjct: 129 IASGVIDFGRLTHGLAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGWKVFDKMRVRNVVSW 188

Query: 440 ---------CGSLDDAKKVFREMEKKSLATWNSMITSLGVHGCGEEALSLFTDMEMANVK 288
                    CG LD A++VF  +  K++ +W +MI     +    +A  LF  M + NV+
Sbjct: 189 TTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIKAFDLFERMLIDNVR 248

Query: 287 PDAITFVGVLSACVHINNLEIGVKLFNY 204
           P+  T V ++ AC  + +L++G ++ ++
Sbjct: 249 PNEFTLVSLIKACTDLGSLKLGRRMHDF 276


>ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75275188|sp|Q38959.1|PP257_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g26630, chloroplastic; Flags: Precursor
           gi|1402883|emb|CAA66814.1| hypothetical protein
           [Arabidopsis thaliana] gi|1495263|emb|CAA66119.1| orf09
           [Arabidopsis thaliana] gi|11994298|dbj|BAB01728.1|
           unnamed protein product [Arabidopsis thaliana]
           gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis
           thaliana] gi|23198064|gb|AAN15559.1| unknown protein
           [Arabidopsis thaliana] gi|332643668|gb|AEE77189.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 455

 Score =  270 bits (690), Expect = 2e-70
 Identities = 134/207 (64%), Positives = 165/207 (79%), Gaps = 1/207 (0%)
 Frame = -1

Query: 731 DVARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQLENVKPNEFTLVSLLIAC 552
           D A I+F QMP+RNVVSWT MI  Y +N +P EAF+LF RMQ+++VKPNEFT+V+LL A 
Sbjct: 202 DSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQAS 261

Query: 551 TELGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSKCGSLDDAKKVFREMEKKSLATWN 372
           T+LGSL +G WVHD+A K+GF L  +LGTALIDMYSKCGSL DA+KVF  M+ KSLATWN
Sbjct: 262 TQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWN 321

Query: 371 SMITSLGVHGCGEEALSLFTDM-EMANVKPDAITFVGVLSACVHINNLEIGVKLFNYMNE 195
           SMITSLGVHGCGEEALSLF +M E A+V+PDAITFVGVLSAC +  N++ G++ F  M +
Sbjct: 322 SMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQ 381

Query: 194 RYGIVPIREHYSCMLELHNRESMTEEA 114
            YGI PIREH +CM++L  +    E+A
Sbjct: 382 VYGISPIREHNACMIQLLEQALEVEKA 408



 Score = 95.5 bits (236), Expect = 1e-17
 Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 32/209 (15%)
 Frame = -1

Query: 725 ARILFEQMPLRNVVSWTTMIDGYARNGKPQEAFELFWRMQLENVKP-NEFTLVSLLIACT 549
           A ++F Q+   +  +W  MI   + N KP+EA  LF  M + +    ++FT   ++ AC 
Sbjct: 71  ASLVFNQLQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACL 130

Query: 548 ELGSLKLGTWVHDFALKSGFKLGTYLGTALIDMYSKCG---------------------- 435
              S++LGT VH  A+K+GF    +    L+D+Y KCG                      
Sbjct: 131 ASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTT 190

Query: 434 ---------SLDDAKKVFREMEKKSLATWNSMITSLGVHGCGEEALSLFTDMEMANVKPD 282
                     LD A+ VF +M  +++ +W +MIT+   +   +EA  LF  M++ +VKP+
Sbjct: 191 MLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPN 250

Query: 281 AITFVGVLSACVHINNLEIGVKLFNYMNE 195
             T V +L A   + +L +G  + +Y ++
Sbjct: 251 EFTIVNLLQASTQLGSLSMGRWVHDYAHK 279