BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00013338
         (1642 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273438.2| PREDICTED: zinc finger CCCH domain-containin...   364   4e-98
ref|XP_002524655.1| rrm/rnp domain, putative [Ricinus communis] ...   363   9e-98
ref|XP_004158351.1| PREDICTED: zinc finger CCCH domain-containin...   340   5e-91
ref|XP_004141194.1| PREDICTED: zinc finger CCCH domain-containin...   340   5e-91
ref|XP_002300018.1| predicted protein [Populus trichocarpa] gi|2...   339   1e-90

>ref|XP_002273438.2| PREDICTED: zinc finger CCCH domain-containing protein 41-like
           [Vitis vinifera]
          Length = 948

 Score =  364 bits (934), Expect = 4e-98
 Identities = 183/293 (62%), Positives = 220/293 (75%), Gaps = 6/293 (2%)
 Frame = -3

Query: 863 RNHKHRRRETQPHSQERNLEGSI--QPYRNRNKPFENGHPHREATSQSNEAWRNYNMPPL 690
           RNHKHRRRET+  S ER+    +  +PYR RNKPFENGH  RE  SQS+ +W+NYN+ P+
Sbjct: 35  RNHKHRRRETRSQSLERDSLEQVLSRPYRKRNKPFENGHSFRENDSQSSGSWKNYNISPM 94

Query: 689 EKDFPENFDKRRHGSTAVSRAPLDLNQRVRGNQSWTGDPGSGRGRGRELGPWSIHDSRFN 510
           EKDF   F+KRR G    +RAPLDLNQR R NQS++GD G  RGRGR+ G W+  D RF+
Sbjct: 95  EKDFSGKFEKRRPGLATFARAPLDLNQRTRMNQSFSGDSGPVRGRGRDPGSWNQRDPRFS 154

Query: 509 SLDFNPAIVQQGYVPSGLFAGRGMPTVSNSQSASWNAFGLVQGLPNGGLDSLHSIGLQRT 330
            +D    +VQ G +P GL+AGRG+P VSN+Q+ASW+ FGL+ G+PNG LDSLHS+GLQ T
Sbjct: 155 QVDIASQMVQ-GSIPPGLYAGRGLPNVSNTQNASWSGFGLLPGIPNGALDSLHSLGLQGT 213

Query: 329 LRP---SSMNMGIPHQRCRDFEERGFCLRGDMCPMEHGINRIVVEDVQSLSQFNLPVSIP 159
           LRP   +S+N  IP QRCRDFEERGFCLRGDMCPMEHG+NRIVVEDVQSLSQFNLPVS+P
Sbjct: 214 LRPPLSTSLNKSIPRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQSLSQFNLPVSLP 273

Query: 158 SAHLMGASAVPGPLSAVSA-PNTSGNGQGVYNKSSKAGAEDVGLDLNGAADGS 3
           SAHL+G  A PGPL +V+A P+T  N +G  NKS K    +  L LNGA  GS
Sbjct: 274 SAHLLGTPAGPGPLPSVNAPPSTLMNSKGFQNKSGKPEVAEDELGLNGAFSGS 326


>ref|XP_002524655.1| rrm/rnp domain, putative [Ricinus communis]
           gi|223536016|gb|EEF37674.1| rrm/rnp domain, putative
           [Ricinus communis]
          Length = 972

 Score =  363 bits (931), Expect = 9e-98
 Identities = 182/292 (62%), Positives = 224/292 (76%), Gaps = 9/292 (3%)
 Frame = -3

Query: 863 RNHKHRRRETQPHSQERNLEGSIQP-----YRNRNKPFENGHPHREATSQSNEAWRNYNM 699
           RNHKHRRRET+  S ER+   S++P     YR RNKPFENGHP RE  SQ +E W+N N+
Sbjct: 35  RNHKHRRRETRSQSTERD---SLEPIFTRSYRKRNKPFENGHPFRENESQGSETWKNSNI 91

Query: 698 PPLEKDFPENFDKRRHGSTAVSRAPLDLNQRVRGNQSWTGDPGSGRGRGRELGPWSIHDS 519
            PLEKDF + FDKRR G  +  R  +DLNQR+R NQ + G+PG GRGRGR+ G W+  DS
Sbjct: 92  APLEKDFIK-FDKRRPGMASFPRMNVDLNQRIRSNQIFFGEPGPGRGRGRDSGSWNQRDS 150

Query: 518 RFNSLDFNPAIVQQGYVPSGLFAGRGMPTVSNSQSASWNAFGLVQGLPNGGLDSLHSIGL 339
           RF+S+D    +VQQG +  GLFAGRG+P VSN+Q++SWN FGL+ G+P+GGLD+LH IGL
Sbjct: 151 RFSSVDIASQMVQQGSITPGLFAGRGLPNVSNTQNSSWNTFGLIPGIPSGGLDTLHPIGL 210

Query: 338 QRTLRP---SSMNMGIPHQRCRDFEERGFCLRGDMCPMEHGINRIVVEDVQSLSQFNLPV 168
           Q TLRP   SS+N+GIP QRCRDFEERGFCLRGDMCPMEHGINRIVVEDVQSLSQFNLPV
Sbjct: 211 QGTLRPAVNSSLNIGIPRQRCRDFEERGFCLRGDMCPMEHGINRIVVEDVQSLSQFNLPV 270

Query: 167 SIPSAHLMGASAVPGPLSAVSAPNTS-GNGQGVYNKSSKAGAEDVGLDLNGA 15
           S+PSA L+G  A PG L +V A +T+  N +G+++++SK+G  D G+  NGA
Sbjct: 271 SLPSAPLVGTPAGPGALQSVGASSTTLMNSKGLHSRNSKSGMVDDGMGFNGA 322


>ref|XP_004158351.1| PREDICTED: zinc finger CCCH domain-containing protein 41-like
           [Cucumis sativus]
          Length = 800

 Score =  340 bits (873), Expect = 5e-91
 Identities = 174/324 (53%), Positives = 223/324 (68%), Gaps = 5/324 (1%)
 Frame = -3

Query: 959 MDQRILFPKRDLSPHYSAXXXXXXXXXXXXXDRNHKHRRRETQPHSQERNL-EGSIQPYR 783
           M+ ++ +PK  +S  Y +             DRNHKHRRRET+  S ER+  E  ++PY 
Sbjct: 1   MELKVSYPKPGISSDYVSDPEEKDISDDEDDDRNHKHRRRETRSQSLERDAREHVLRPYG 60

Query: 782 NRNKPFENGHPHREATSQSNEAWRNYNMPPLEKDFPENFDKRRHGSTAVSRAPLDLNQRV 603
            R+KPFENG   R+  SQ+NEAW+++N P LEKD P  FDKRR G+    R   D NQR+
Sbjct: 61  KRSKPFENGRSFRDNDSQANEAWKSFNAPTLEKDTPGKFDKRRLGAVPGPRVVGDFNQRI 120

Query: 602 RGNQSWTGDPGSGRGRGRELGPWSIHDSRFNSLDFNPAIVQQGYVPSGLFAGRGMPTVSN 423
           RGNQ+++GD  SGRGRGR+ G W+  DSRF+ +D    IV  G  P  LFAGRG+P+VS 
Sbjct: 121 RGNQAFSGDLSSGRGRGRDSGTWNQFDSRFSPVDIASQIVHHGSFPPSLFAGRGLPSVST 180

Query: 422 SQSASWNAFGLVQGLPNGGLDSLHSIGLQRTLRP---SSMNMGIPHQRCRDFEERGFCLR 252
           +Q+A WNAFGL+ G+PN GL+++H IGLQ TLRP     +N+GIP QRCRDFEERGFCLR
Sbjct: 181 AQTAPWNAFGLISGIPNSGLETMHPIGLQGTLRPPINPPLNIGIPRQRCRDFEERGFCLR 240

Query: 251 GDMCPMEHGINRIVVEDVQSLSQFNLPVSIPSAHLMGASAVPGPLSAVSAPNTS-GNGQG 75
           GDMCPMEHGINRIVVEDVQSLSQFNLP+S+P+AHL+G +   G L AVS  +T+  +G+G
Sbjct: 241 GDMCPMEHGINRIVVEDVQSLSQFNLPLSLPNAHLIGKTT--GSLPAVSTSSTTVMSGKG 298

Query: 74  VYNKSSKAGAEDVGLDLNGAADGS 3
           +  K+ K    D  +  +G   GS
Sbjct: 299 LLGKNIKPSVGDDSMPFHGVYSGS 322


>ref|XP_004141194.1| PREDICTED: zinc finger CCCH domain-containing protein 41-like
           [Cucumis sativus]
          Length = 901

 Score =  340 bits (873), Expect = 5e-91
 Identities = 174/324 (53%), Positives = 223/324 (68%), Gaps = 5/324 (1%)
 Frame = -3

Query: 959 MDQRILFPKRDLSPHYSAXXXXXXXXXXXXXDRNHKHRRRETQPHSQERNL-EGSIQPYR 783
           M+ ++ +PK  +S  Y +             DRNHKHRRRET+  S ER+  E  ++PY 
Sbjct: 1   MELKVSYPKPGISSDYVSDPEEKDISDDEDDDRNHKHRRRETRSQSLERDAREHVLRPYG 60

Query: 782 NRNKPFENGHPHREATSQSNEAWRNYNMPPLEKDFPENFDKRRHGSTAVSRAPLDLNQRV 603
            R+KPFENG   R+  SQ+NEAW+++N P LEKD P  FDKRR G+    R   D NQR+
Sbjct: 61  KRSKPFENGRSFRDNDSQANEAWKSFNAPTLEKDTPGKFDKRRLGAVPGPRVVGDFNQRI 120

Query: 602 RGNQSWTGDPGSGRGRGRELGPWSIHDSRFNSLDFNPAIVQQGYVPSGLFAGRGMPTVSN 423
           RGNQ+++GD  SGRGRGR+ G W+  DSRF+ +D    IV  G  P  LFAGRG+P+VS 
Sbjct: 121 RGNQAFSGDLSSGRGRGRDSGTWNQFDSRFSPVDIASQIVHHGSFPPSLFAGRGLPSVST 180

Query: 422 SQSASWNAFGLVQGLPNGGLDSLHSIGLQRTLRP---SSMNMGIPHQRCRDFEERGFCLR 252
           +Q+A WNAFGL+ G+PN GL+++H IGLQ TLRP     +N+GIP QRCRDFEERGFCLR
Sbjct: 181 AQTAPWNAFGLISGIPNSGLETMHPIGLQGTLRPPINPPLNIGIPRQRCRDFEERGFCLR 240

Query: 251 GDMCPMEHGINRIVVEDVQSLSQFNLPVSIPSAHLMGASAVPGPLSAVSAPNTS-GNGQG 75
           GDMCPMEHGINRIVVEDVQSLSQFNLP+S+P+AHL+G +   G L AVS  +T+  +G+G
Sbjct: 241 GDMCPMEHGINRIVVEDVQSLSQFNLPLSLPNAHLIGKTT--GSLPAVSTSSTTVMSGKG 298

Query: 74  VYNKSSKAGAEDVGLDLNGAADGS 3
           +  K+ K    D  +  +G   GS
Sbjct: 299 LLGKNIKPSVGDDSMPFHGVYSGS 322


>ref|XP_002300018.1| predicted protein [Populus trichocarpa] gi|222847276|gb|EEE84823.1|
           predicted protein [Populus trichocarpa]
          Length = 981

 Score =  339 bits (870), Expect = 1e-90
 Identities = 177/293 (60%), Positives = 212/293 (72%), Gaps = 6/293 (2%)
 Frame = -3

Query: 863 RNHKHRRRETQPHSQERN-LEG-SIQPYRNRNKPFENGHPHREATSQSNEAWRNYNMPPL 690
           RNHKHRRRET+  S ER+ LE  S +PYR  NK FENGHP RE  SQ+ E W+NYN   L
Sbjct: 35  RNHKHRRRETRSQSLERDSLEPVSTRPYRKHNKHFENGHPFRENESQARETWKNYNSVSL 94

Query: 689 EKDFPENFDKRRHGSTAVSRAPLDLNQRVRGNQSWTGDPGSGRGRGRELGPWSIHDSRFN 510
           EKD+   F++ R    ++ R P+DLNQR+R NQ+++GDPG  RGRGRE G WS  DSRF+
Sbjct: 95  EKDYATKFERIRPDLMSLPRMPVDLNQRIRLNQTFSGDPGPSRGRGREYGSWSQRDSRFS 154

Query: 509 SLDFNPAIVQQGYVPSGLFAGRGMPTVSNSQSASWNAFGLVQGLPNGGLDSLHSIGLQRT 330
           S+       Q  ++   LFAGRG+  VSN QSASWNAFGL+  + NGGLD++H IGLQ T
Sbjct: 155 SVGIAS---QMAHLGPSLFAGRGLANVSNVQSASWNAFGLMPRMSNGGLDTIHPIGLQGT 211

Query: 329 LRP---SSMNMGIPHQRCRDFEERGFCLRGDMCPMEHGINRIVVEDVQSLSQFNLPVSIP 159
           LRP   SS+NMGIPHQRCRDFEERGFCLRGDMCP+EHG+NRIVVEDVQSLSQFNLPVS+P
Sbjct: 212 LRPAVNSSLNMGIPHQRCRDFEERGFCLRGDMCPLEHGVNRIVVEDVQSLSQFNLPVSLP 271

Query: 158 SAHLMGASAVPGPLSAVSA-PNTSGNGQGVYNKSSKAGAEDVGLDLNGAADGS 3
            A L G ++  G +  V A P T  N +G++ KS+K G  D GL LNGA  GS
Sbjct: 272 RAQLPGTTSGLGAVPTVGAPPATLMNSKGMHGKSNKPGIVDDGLGLNGAYTGS 324