BLASTX nr result

ID: Bupleurum21_contig00013183 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00013183
         (697 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268761.2| PREDICTED: LOW QUALITY PROTEIN: protein PHYL...   319   1e-92
emb|CBI27422.3| unnamed protein product [Vitis vinifera]              319   1e-92
ref|XP_002314907.1| predicted protein [Populus trichocarpa] gi|2...   281   1e-79
ref|XP_003545988.1| PREDICTED: protein PHYLLO, chloroplastic-lik...   275   4e-78
ref|XP_004155371.1| PREDICTED: protein PHYLLO, chloroplastic-lik...   274   6e-78

>ref|XP_002268761.2| PREDICTED: LOW QUALITY PROTEIN: protein PHYLLO, chloroplastic-like
            [Vitis vinifera]
          Length = 1614

 Score =  319 bits (817), Expect(2) = 1e-92
 Identities = 146/205 (71%), Positives = 173/205 (84%)
 Frame = -1

Query: 622  TSVDSAAYWATSSPRGPVHINCPFREPLESSPKKWMLSCLKGLDSWMLSAEPFTNYIKVQ 443
            T++DSA YWATSSP GPVHINCPFREPLE+SPK+WMLSCLKGLDSWM SAEPFT YI++Q
Sbjct: 397  TTLDSAVYWATSSPCGPVHINCPFREPLENSPKEWMLSCLKGLDSWMSSAEPFTKYIQLQ 456

Query: 442  HSFPRNETHGSLTKVLNVIKGAKRGILLLGAINTDDDIWXXXXXXXXXLWPVVADILSGL 263
            HS   +++ G + +V+ VI+GAKRG+LL+GAI T+DDIW          WPVVADILSGL
Sbjct: 457  HSHAPDDSQGQMAEVIEVIQGAKRGLLLIGAITTEDDIWAALLLAKHLCWPVVADILSGL 516

Query: 262  RMRMYTTSFSEIRENFVFVDHLDHTLLSSAVRDWAQADVIVQIGSRITSKRVSQMLEDCF 83
            R+R  +TSF EI +N +F+DHLDH LLS  VR WAQADVI+QIGSRITSKR+SQM+EDCF
Sbjct: 517  RLRKLSTSFQEIEDNVLFLDHLDHALLSDFVRVWAQADVIIQIGSRITSKRISQMIEDCF 576

Query: 82   PCSYILVDKHPNRHDPSHILTHRVQ 8
            PCSYI+VDKHP RHDPSH+LTHR+Q
Sbjct: 577  PCSYIMVDKHPCRHDPSHLLTHRIQ 601



 Score = 47.4 bits (111), Expect(2) = 1e-92
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -2

Query: 696 NHFSPFVRHFYGLPVPTDTIPARMVL 619
           NHF  FVR F+GLPVPTD IPARM+L
Sbjct: 371 NHFGSFVRFFFGLPVPTDHIPARMIL 396


>emb|CBI27422.3| unnamed protein product [Vitis vinifera]
          Length = 633

 Score =  319 bits (817), Expect(2) = 1e-92
 Identities = 146/205 (71%), Positives = 173/205 (84%)
 Frame = -1

Query: 622 TSVDSAAYWATSSPRGPVHINCPFREPLESSPKKWMLSCLKGLDSWMLSAEPFTNYIKVQ 443
           T++DSA YWATSSP GPVHINCPFREPLE+SPK+WMLSCLKGLDSWM SAEPFT YI++Q
Sbjct: 211 TTLDSAVYWATSSPCGPVHINCPFREPLENSPKEWMLSCLKGLDSWMSSAEPFTKYIQLQ 270

Query: 442 HSFPRNETHGSLTKVLNVIKGAKRGILLLGAINTDDDIWXXXXXXXXXLWPVVADILSGL 263
           HS   +++ G + +V+ VI+GAKRG+LL+GAI T+DDIW          WPVVADILSGL
Sbjct: 271 HSHAPDDSQGQMAEVIEVIQGAKRGLLLIGAITTEDDIWAALLLAKHLCWPVVADILSGL 330

Query: 262 RMRMYTTSFSEIRENFVFVDHLDHTLLSSAVRDWAQADVIVQIGSRITSKRVSQMLEDCF 83
           R+R  +TSF EI +N +F+DHLDH LLS  VR WAQADVI+QIGSRITSKR+SQM+EDCF
Sbjct: 331 RLRKLSTSFQEIEDNVLFLDHLDHALLSDFVRVWAQADVIIQIGSRITSKRISQMIEDCF 390

Query: 82  PCSYILVDKHPNRHDPSHILTHRVQ 8
           PCSYI+VDKHP RHDPSH+LTHR+Q
Sbjct: 391 PCSYIMVDKHPCRHDPSHLLTHRIQ 415



 Score = 47.4 bits (111), Expect(2) = 1e-92
 Identities = 20/26 (76%), Positives = 22/26 (84%)
 Frame = -2

Query: 696 NHFSPFVRHFYGLPVPTDTIPARMVL 619
           NHF  FVR F+GLPVPTD IPARM+L
Sbjct: 185 NHFGSFVRFFFGLPVPTDHIPARMIL 210


>ref|XP_002314907.1| predicted protein [Populus trichocarpa] gi|222863947|gb|EEF01078.1|
            predicted protein [Populus trichocarpa]
          Length = 848

 Score =  281 bits (720), Expect(2) = 1e-79
 Identities = 135/208 (64%), Positives = 158/208 (75%), Gaps = 1/208 (0%)
 Frame = -1

Query: 622  TSVDSAAYWATSSPRGPVHINCPFREPLESSPKKWMLSCLKGLDSWMLSAEPFTNYIKVQ 443
            T++DSA +WATS P GPVHINCPFREPL+ S   WMLSCLKGLD WM  AEPFT YI++Q
Sbjct: 435  TTIDSAVHWATSLPYGPVHINCPFREPLDDSSDNWMLSCLKGLDIWMSGAEPFTKYIQLQ 494

Query: 442  HSFP-RNETHGSLTKVLNVIKGAKRGILLLGAINTDDDIWXXXXXXXXXLWPVVADILSG 266
            +S   ++     + +VL +IKG  RG+LLLGAI+T+D+IW          WPVVADILSG
Sbjct: 495  NSLACKDGACVPMAEVLEIIKGTDRGLLLLGAIHTEDEIWAALILAKHLNWPVVADILSG 554

Query: 265  LRMRMYTTSFSEIRENFVFVDHLDHTLLSSAVRDWAQADVIVQIGSRITSKRVSQMLEDC 86
            LR+R    S  EI EN +FVDHLDH LLS  VR W + DVIVQIGSRITSKRVSQM+E+C
Sbjct: 555  LRLRKLLPSLPEIEENVLFVDHLDHALLSEWVRGWIRFDVIVQIGSRITSKRVSQMMEEC 614

Query: 85   FPCSYILVDKHPNRHDPSHILTHRVQCS 2
            FPC+YILVD HP RHDPSH +THRVQCS
Sbjct: 615  FPCTYILVDNHPCRHDPSHFVTHRVQCS 642



 Score = 41.6 bits (96), Expect(2) = 1e-79
 Identities = 18/26 (69%), Positives = 19/26 (73%)
 Frame = -2

Query: 696 NHFSPFVRHFYGLPVPTDTIPARMVL 619
           NHF  FVR  + LP PTD IPARMVL
Sbjct: 409 NHFGSFVRFTFSLPAPTDNIPARMVL 434


>ref|XP_003545988.1| PREDICTED: protein PHYLLO, chloroplastic-like [Glycine max]
          Length = 1614

 Score =  275 bits (702), Expect(2) = 4e-78
 Identities = 127/207 (61%), Positives = 158/207 (76%)
 Frame = -1

Query: 622  TSVDSAAYWATSSPRGPVHINCPFREPLESSPKKWMLSCLKGLDSWMLSAEPFTNYIKVQ 443
            T++DSA +WATSSP GPVHINCPFREPLESSP +W+ SCL GLD WM +AEPFT YI +Q
Sbjct: 461  TTLDSAVHWATSSPCGPVHINCPFREPLESSPCRWLSSCLSGLDLWMANAEPFTKYIHMQ 520

Query: 442  HSFPRNETHGSLTKVLNVIKGAKRGILLLGAINTDDDIWXXXXXXXXXLWPVVADILSGL 263
             S       G +T+VLN+I  A   +LL GAI+T+D++W          WPVVADILSGL
Sbjct: 521  LSHTCINAPGEMTEVLNLILRANNSLLLFGAIHTEDEMWAALLLAKHLQWPVVADILSGL 580

Query: 262  RMRMYTTSFSEIRENFVFVDHLDHTLLSSAVRDWAQADVIVQIGSRITSKRVSQMLEDCF 83
            R+R   TSF +I  NF+FVD+LDH LLS +V+ W + DV++QIGSRITSKR+ Q++EDC 
Sbjct: 581  RLRKLLTSFPDIERNFIFVDNLDHALLSDSVKGWLEVDVVIQIGSRITSKRICQIIEDCA 640

Query: 82   PCSYILVDKHPNRHDPSHILTHRVQCS 2
            P SYI+VDKHP+RHDPSHI+THR+Q S
Sbjct: 641  PFSYIMVDKHPHRHDPSHIVTHRIQTS 667



 Score = 43.1 bits (100), Expect(2) = 4e-78
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = -2

Query: 696 NHFSPFVRHFYGLPVPTDTIPARMVL 619
           NHF  FVR F+ LP PTD IPA+MVL
Sbjct: 435 NHFGSFVRFFFNLPAPTDQIPAKMVL 460


>ref|XP_004155371.1| PREDICTED: protein PHYLLO, chloroplastic-like [Cucumis sativus]
          Length = 1794

 Score =  274 bits (700), Expect(2) = 6e-78
 Identities = 124/205 (60%), Positives = 157/205 (76%)
 Frame = -1

Query: 622  TSVDSAAYWATSSPRGPVHINCPFREPLESSPKKWMLSCLKGLDSWMLSAEPFTNYIKVQ 443
            T++DSA +WATSSP GPVHINCPFREPLE+SP  W LSCL GL  W  S E FT YI+++
Sbjct: 567  TTLDSAVHWATSSPCGPVHINCPFREPLENSPSPWNLSCLNGLHIWSSSTEVFTKYIRLE 626

Query: 442  HSFPRNETHGSLTKVLNVIKGAKRGILLLGAINTDDDIWXXXXXXXXXLWPVVADILSGL 263
             S    +T G + +VL VI GA+ G+LLLG+I ++D+IW          WP+VAD+LSGL
Sbjct: 627  ASPTSTDTFGHMAEVLKVIHGARNGVLLLGSIQSEDEIWAAFLLAKHISWPIVADVLSGL 686

Query: 262  RMRMYTTSFSEIRENFVFVDHLDHTLLSSAVRDWAQADVIVQIGSRITSKRVSQMLEDCF 83
            R+R   + F E++ NF F+DHLDH LLS +VR W + DVI+QIGSR+TSKRVS++LEDC 
Sbjct: 687  RLRKSLSPFLEMKNNFFFIDHLDHALLSDSVRKWLKFDVIIQIGSRVTSKRVSKLLEDCS 746

Query: 82   PCSYILVDKHPNRHDPSHILTHRVQ 8
            PCSYI+VDKHP+RHDPSHI+THR+Q
Sbjct: 747  PCSYIMVDKHPDRHDPSHIVTHRIQ 771



 Score = 43.5 bits (101), Expect(2) = 6e-78
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = -2

Query: 696 NHFSPFVRHFYGLPVPTDTIPARMVL 619
           NHF  FVR F+ LP PTD +PARMVL
Sbjct: 541 NHFGSFVRFFFSLPAPTDQLPARMVL 566


Top