BLASTX nr result

ID: Bupleurum21_contig00013150 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00013150
         (1028 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272657.2| PREDICTED: serine/arginine-rich splicing fac...   161   3e-37
ref|XP_003544651.1| PREDICTED: serine/arginine-rich splicing fac...   160   5e-37
ref|NP_001241113.1| uncharacterized protein LOC100790689 [Glycin...   160   5e-37
ref|XP_003588649.1| RNA-binding protein Rsf1 [Medicago truncatul...   157   5e-36
ref|XP_002330789.1| predicted protein [Populus trichocarpa] gi|2...   157   5e-36

>ref|XP_002272657.2| PREDICTED: serine/arginine-rich splicing factor 7-like isoform 1
           [Vitis vinifera] gi|296083786|emb|CBI24003.3| unnamed
           protein product [Vitis vinifera]
          Length = 181

 Score =  161 bits (407), Expect = 3e-37
 Identities = 79/103 (76%), Positives = 82/103 (79%)
 Frame = +1

Query: 1   SLDQRVTERELEDEFRVYGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE 180
           +LD RVTERELEDEFRV+GVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE
Sbjct: 8   NLDPRVTERELEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE 67

Query: 181 LSHNSKXXXXXXXXXXXXXXXXXXXSDSKCYECGEPGHFAREC 309
           LSHNS+                   SD KCYECGEPGHFAREC
Sbjct: 68  LSHNSR---GGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 107


>ref|XP_003544651.1| PREDICTED: serine/arginine-rich splicing factor 7-like [Glycine
           max]
          Length = 178

 Score =  160 bits (405), Expect = 5e-37
 Identities = 78/103 (75%), Positives = 82/103 (79%)
 Frame = +1

Query: 1   SLDQRVTERELEDEFRVYGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE 180
           +LD RVTER+LEDEFRV+GVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE
Sbjct: 8   NLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE 67

Query: 181 LSHNSKXXXXXXXXXXXXXXXXXXXSDSKCYECGEPGHFAREC 309
           LSHNS+                   SD KCYECGEPGHFAREC
Sbjct: 68  LSHNSR-------GGGGGRGGRSGGSDLKCYECGEPGHFAREC 103


>ref|NP_001241113.1| uncharacterized protein LOC100790689 [Glycine max]
           gi|255625755|gb|ACU13222.1| unknown [Glycine max]
           gi|255635722|gb|ACU18210.1| unknown [Glycine max]
          Length = 178

 Score =  160 bits (405), Expect = 5e-37
 Identities = 78/103 (75%), Positives = 82/103 (79%)
 Frame = +1

Query: 1   SLDQRVTERELEDEFRVYGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE 180
           +LD RVTER+LEDEFRV+GVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE
Sbjct: 8   NLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE 67

Query: 181 LSHNSKXXXXXXXXXXXXXXXXXXXSDSKCYECGEPGHFAREC 309
           LSHNS+                   SD KCYECGEPGHFAREC
Sbjct: 68  LSHNSR-------GGGGGRGGRSGGSDLKCYECGEPGHFAREC 103


>ref|XP_003588649.1| RNA-binding protein Rsf1 [Medicago truncatula]
           gi|355477697|gb|AES58900.1| RNA-binding protein Rsf1
           [Medicago truncatula]
          Length = 190

 Score =  157 bits (396), Expect = 5e-36
 Identities = 76/105 (72%), Positives = 82/105 (78%), Gaps = 2/105 (1%)
 Frame = +1

Query: 1   SLDQRVTERELEDEFRVYGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE 180
           +LD RV+ER+LEDEFRV+GVIRSVWVARRPPGYAFIDFDDRRDAQDAIR+LDGKNGWRVE
Sbjct: 8   NLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRDLDGKNGWRVE 67

Query: 181 LSHNSK--XXXXXXXXXXXXXXXXXXXSDSKCYECGEPGHFAREC 309
           LSHNS+                     SD KCYECGEPGHFAREC
Sbjct: 68  LSHNSRSGGGGGGGGGGRGRGGGGGGGSDLKCYECGEPGHFAREC 112


>ref|XP_002330789.1| predicted protein [Populus trichocarpa] gi|222872591|gb|EEF09722.1|
           predicted protein [Populus trichocarpa]
          Length = 187

 Score =  157 bits (396), Expect = 5e-36
 Identities = 74/103 (71%), Positives = 80/103 (77%)
 Frame = +1

Query: 1   SLDQRVTERELEDEFRVYGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVE 180
           +LD RV+ER+LEDEFR +GVIRSVWVARRPPGYAFIDFDD+RDAQDAI ELDGKNGWRVE
Sbjct: 8   NLDPRVSERDLEDEFRRFGVIRSVWVARRPPGYAFIDFDDKRDAQDAIHELDGKNGWRVE 67

Query: 181 LSHNSKXXXXXXXXXXXXXXXXXXXSDSKCYECGEPGHFAREC 309
           LSHNS+                   SD KCYECGEPGHFAREC
Sbjct: 68  LSHNSRGGGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFAREC 110


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