BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00013061
         (1196 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]     652   0.0  
emb|CBI17913.3| unnamed protein product [Vitis vinifera]              644   0.0  
ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana] gi|75174554...   641   0.0  
ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] gi...   638   0.0  
ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]    638   0.0  

>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
          Length = 1162

 Score =  652 bits (1683), Expect = 0.0
 Identities = 323/379 (85%), Positives = 352/379 (92%)
 Frame = -2

Query: 1138 MSNGTKFSAMCSLFNWMQKSKSSALKRSKFRKFLDHFCKPSDYFSAIRLILPSLDRERGS 959
            M   TKFS +CSLF W+Q+S++SA KRSKFR FLD FC     FSAIRLILP+LDRERGS
Sbjct: 1    MCEETKFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGS 60

Query: 958  YGLKESVLATCLIDALAISRDSHDAIRLINWRKGGAKTGASAGNFSQVAAEVLQLRQGMT 779
            YGLKESVLATCLIDAL +SR+S DA+RLINWRKGGAKTGA+AGNF+ VAAEVLQ RQGMT
Sbjct: 61   YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMT 120

Query: 778  SGGLTIKELNNLLDRLASSENRAEKTSVLSELIQKTNAQEMKWIVMIILKDLKLGTSEKS 599
            SGGLTIKELN+LLD LASSENR EKTSVLS LI+KTNAQEMKWIVMIILKDLKLG SEKS
Sbjct: 121  SGGLTIKELNDLLDCLASSENRTEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGISEKS 180

Query: 598  IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLALRVSNAASAWK 419
            IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLA+RV++A +AWK
Sbjct: 181  IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVADATAAWK 240

Query: 418  KLHGKEVVVECKFDGDRIQIHKNGDDIHFFSRNFLDHPEYGHAMSNIITKNVLTDRCILD 239
            KLHGKEVVVECKFDGDRIQIHKNG++IHFFSRNFLDHPEY +AMSNI+ +N+L DRCILD
Sbjct: 241  KLHGKEVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKYAMSNIVAQNLLVDRCILD 300

Query: 238  GEMLVWDTSLNRFAEFGSNQEIAKAAKEGLDNDRQLCYVAFDILYVGDSSVIHQSLKERH 59
            GEMLVWD SLNRFAEFGSNQEIAKAAKEGLD+DRQLCYVAFDILYVGD+SVIHQ+LKERH
Sbjct: 301  GEMLVWDISLNRFAEFGSNQEIAKAAKEGLDSDRQLCYVAFDILYVGDTSVIHQTLKERH 360

Query: 58   ELLRKVVKPIKGRLEILLP 2
            ELL+KVVKP+KGR EIL+P
Sbjct: 361  ELLQKVVKPLKGRFEILVP 379


>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
          Length = 1163

 Score =  644 bits (1661), Expect = 0.0
 Identities = 322/380 (84%), Positives = 351/380 (92%), Gaps = 1/380 (0%)
 Frame = -2

Query: 1138 MSNGTKFSAMCSLFNWMQKSKSSALKRSKFRKFLDHFCKPSDYFSAIRLILPSLDRERGS 959
            M   TKFS +CSLF W+Q+S++SA KRSKFR FLD FC     FSAIRLILP+LDRERGS
Sbjct: 1    MCEETKFSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCINGHQFSAIRLILPNLDRERGS 60

Query: 958  YGLKESVLATCLIDALAISRDSHDAIRLINWRKGGAKTGASAGNFSQVAAEVLQLRQGMT 779
            YGLKESVLATCLIDAL +SR+S DA+RLINWRKGGAKTGA+AGNF+ VAAEVLQ RQGMT
Sbjct: 61   YGLKESVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMT 120

Query: 778  SGGLTIKELNNLLDRLASSENRAEKTSVLSELIQKTNAQEMKWIVMIILKDLKLGTSEKS 599
            SGGLTIKELN+LLD LASSENR EKTSVLS LI+KTNAQEMKWIVMIILKDLKLG SEKS
Sbjct: 121  SGGLTIKELNDLLDCLASSENRTEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGISEKS 180

Query: 598  IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLALRVSNAASAWK 419
            IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLA+RV++A +AWK
Sbjct: 181  IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVADATAAWK 240

Query: 418  KLHGKEVVVECKFDGDRIQIHKNGDDIHFFSRNFLDHPEYGHAMSNIITKNVLTDRCILD 239
            KLHGKEVVVECKFDGDRIQIHKNG++IHFFSRNFLDHPEY +AMSNI+ +N+L DRCILD
Sbjct: 241  KLHGKEVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKYAMSNIVAQNLLVDRCILD 300

Query: 238  GEMLVWDTSLNRFAEFGSNQEIAKAAKEGLDNDRQ-LCYVAFDILYVGDSSVIHQSLKER 62
            GEMLVWD SLNRFAEFGSNQEIAKAAKEGLD+DRQ L YVAFDILYVGD+SVIHQ+LKER
Sbjct: 301  GEMLVWDISLNRFAEFGSNQEIAKAAKEGLDSDRQVLSYVAFDILYVGDTSVIHQTLKER 360

Query: 61   HELLRKVVKPIKGRLEILLP 2
            HELL+KVVKP+KGR EIL+P
Sbjct: 361  HELLQKVVKPLKGRFEILVP 380


>ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana]
            gi|75174554|sp|Q9LL84.1|DNLI4_ARATH RecName: Full=DNA
            ligase 4; AltName: Full=DNA ligase IV; AltName:
            Full=Polydeoxyribonucleotide synthase [ATP] 4
            gi|9651815|gb|AAF91284.1|AF233527_1 DNA ligase IV
            [Arabidopsis thaliana] gi|332009474|gb|AED96857.1| DNA
            ligase 4 [Arabidopsis thaliana]
          Length = 1219

 Score =  641 bits (1653), Expect = 0.0
 Identities = 312/380 (82%), Positives = 349/380 (91%), Gaps = 1/380 (0%)
 Frame = -2

Query: 1138 MSNGTKFSAMCSLFNWMQKSKSSALKRSKFRKFLDHFCKPSDYFSAIRLILPSLDRERGS 959
            M+   KFS + SLFNW+QKSK+S+ KRSKFRKFLD +CKPSDYF A+RLI+PSLDRERGS
Sbjct: 1    MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS 60

Query: 958  YGLKESVLATCLIDALAISRDSHDAIRLINWRKGG-AKTGASAGNFSQVAAEVLQLRQGM 782
            YGLKESVLATCLIDAL ISRD+ DA+RL+NWRKGG AK GA+AGNFS +AAEVLQ RQGM
Sbjct: 61   YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM 120

Query: 781  TSGGLTIKELNNLLDRLASSENRAEKTSVLSELIQKTNAQEMKWIVMIILKDLKLGTSEK 602
             SGGLTIKELN+LLDRLASSENRAEKT VLS LIQKTNAQEMKW++ IILKDLKLG SEK
Sbjct: 121  ASGGLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEK 180

Query: 601  SIFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLALRVSNAASAW 422
            SIF EFHPDAEDLFNVTCDLKLVCEKL+DR QRHKRQDIEVGKAVRPQLA+R+ +  +AW
Sbjct: 181  SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAW 240

Query: 421  KKLHGKEVVVECKFDGDRIQIHKNGDDIHFFSRNFLDHPEYGHAMSNIITKNVLTDRCIL 242
            KKLHGK+VV ECKFDGDRIQIHKNG DIH+FSRNFLDH EY HAMS++I +N+L D+CIL
Sbjct: 241  KKLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCIL 300

Query: 241  DGEMLVWDTSLNRFAEFGSNQEIAKAAKEGLDNDRQLCYVAFDILYVGDSSVIHQSLKER 62
            DGEMLVWDTSLNRFAEFGSNQEIAKAA+EGLD+ +QLCYVAFD+LYVGD+SVIHQSLKER
Sbjct: 301  DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLKER 360

Query: 61   HELLRKVVKPIKGRLEILLP 2
            HELL+KVVKP+KGRLE+L+P
Sbjct: 361  HELLKKVVKPLKGRLEVLVP 380


>ref|XP_002866187.1| ATLIG4 [Arabidopsis lyrata subsp. lyrata] gi|297312022|gb|EFH42446.1|
            ATLIG4 [Arabidopsis lyrata subsp. lyrata]
          Length = 1221

 Score =  638 bits (1646), Expect = 0.0
 Identities = 313/382 (81%), Positives = 350/382 (91%), Gaps = 3/382 (0%)
 Frame = -2

Query: 1138 MSNGTKFSAMCSLFNWMQKSKSSALKRSKFRKFLDHFCKPSDYFSAIRLILPSLDRERGS 959
            M+   KFS + SLFNW+QKSK+S+ KRSKFRKFLD +CKPSDYF A+RLI+PSLDRERGS
Sbjct: 1    MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPSLDRERGS 60

Query: 958  YGLKESVLATCLIDALAISRDSHDAIRLINWRKGG-AKTGASAGNFSQVAAEVLQLRQGM 782
            YGLKESVLATCLIDAL ISRD+ DA+RL+NWRKGG AK GA+AGNFS +AAEVLQ RQGM
Sbjct: 61   YGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM 120

Query: 781  TSGGLTIKELNNLLDRLASSENR--AEKTSVLSELIQKTNAQEMKWIVMIILKDLKLGTS 608
             SGGLT+KELN+LLDRLASSENR  AEKT VLS LIQKTNAQEMKW++ IILKDLKLG S
Sbjct: 121  ASGGLTVKELNDLLDRLASSENRCRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMS 180

Query: 607  EKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLALRVSNAAS 428
            EKSIF EFHPDAEDLFNVTCDLKLVCEKL+DR QRHKRQDIEVGKAVRPQLA+R+S+  +
Sbjct: 181  EKSIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNA 240

Query: 427  AWKKLHGKEVVVECKFDGDRIQIHKNGDDIHFFSRNFLDHPEYGHAMSNIITKNVLTDRC 248
            AWKKLHGK+VV ECKFDGDRIQIHKNG DIH+FSRNFLDH EY HAMS++I +N+L D+C
Sbjct: 241  AWKKLHGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKC 300

Query: 247  ILDGEMLVWDTSLNRFAEFGSNQEIAKAAKEGLDNDRQLCYVAFDILYVGDSSVIHQSLK 68
            ILDGEMLVWDTSLNRFAEFGSNQEIAKAA+EGLD+ +QLCYVAFD+LYVGD+SVIHQSLK
Sbjct: 301  ILDGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAFDVLYVGDTSVIHQSLK 360

Query: 67   ERHELLRKVVKPIKGRLEILLP 2
            ERHELLRKVVKP+KGRLE+L+P
Sbjct: 361  ERHELLRKVVKPLKGRLEVLVP 382


>ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]
          Length = 1214

 Score =  638 bits (1645), Expect = 0.0
 Identities = 313/379 (82%), Positives = 345/379 (91%)
 Frame = -2

Query: 1138 MSNGTKFSAMCSLFNWMQKSKSSALKRSKFRKFLDHFCKPSDYFSAIRLILPSLDRERGS 959
            M    KF+ + SLF+W+Q+SKSSA KRSKFRKFLD FC PS YFSAIRLILPSLDRERG+
Sbjct: 1    MPEPIKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDTFCSPSHYFSAIRLILPSLDRERGT 60

Query: 958  YGLKESVLATCLIDALAISRDSHDAIRLINWRKGGAKTGASAGNFSQVAAEVLQLRQGMT 779
            YGLKESVLATCLIDAL +SRDS DA+RLINWRKGGAKTGA+AGNF+ VAAEVLQ RQGMT
Sbjct: 61   YGLKESVLATCLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGMT 120

Query: 778  SGGLTIKELNNLLDRLASSENRAEKTSVLSELIQKTNAQEMKWIVMIILKDLKLGTSEKS 599
             GGLTI ELN+LLDRLAS ENRAEKT+VLS LIQKTNAQEMKWIVMI L DLKLG SEKS
Sbjct: 121  PGGLTINELNDLLDRLASGENRAEKTAVLSTLIQKTNAQEMKWIVMIFLVDLKLGVSEKS 180

Query: 598  IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLALRVSNAASAWK 419
            IFHEFHPDAEDLFNVTCDLKLVCEKL+DR QRHKRQDIEVGKAVRPQLA RVSNA +AWK
Sbjct: 181  IFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWK 240

Query: 418  KLHGKEVVVECKFDGDRIQIHKNGDDIHFFSRNFLDHPEYGHAMSNIITKNVLTDRCILD 239
            KLHGKEVV ECKFDGDRIQIHKNG ++H+FSRNFLDH EYGH MS++I +NV + RCILD
Sbjct: 241  KLHGKEVVAECKFDGDRIQIHKNGTEVHYFSRNFLDHSEYGHGMSDVIVQNVRSARCILD 300

Query: 238  GEMLVWDTSLNRFAEFGSNQEIAKAAKEGLDNDRQLCYVAFDILYVGDSSVIHQSLKERH 59
            GEMLVWD SLNRFAEFGSNQEIA+AAK+G D++RQLCYVAFD+LYVGD+SVIH+SLKERH
Sbjct: 301  GEMLVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAFDVLYVGDTSVIHRSLKERH 360

Query: 58   ELLRKVVKPIKGRLEILLP 2
            ELLR VVKP+KG+LE+L+P
Sbjct: 361  ELLRDVVKPVKGQLEVLVP 379