BLASTX nr result
ID: Bupleurum21_contig00013019
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00013019
(899 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|2... 264 2e-68
ref|XP_002533966.1| pentatricopeptide repeat-containing protein,... 263 3e-68
ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containi... 263 5e-68
ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containi... 263 5e-68
ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containi... 261 2e-67
>ref|XP_002326871.1| predicted protein [Populus trichocarpa] gi|222835186|gb|EEE73621.1|
predicted protein [Populus trichocarpa]
Length = 581
Score = 264 bits (675), Expect = 2e-68
Identities = 126/300 (42%), Positives = 200/300 (66%), Gaps = 1/300 (0%)
Frame = -1
Query: 899 GEAFKVGVELDVFVGTSLIEFYSGFESMKHAYQVFNELPIKDMVVWTAILSGFVNRFGDM 720
G K+G D++V T+L++ Y+ F ++ A +VFN++P + +V WTA++ G+V R GDM
Sbjct: 126 GHVVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRR-GDM 184
Query: 719 ERGRELFDKMPRRDLVVWNIMVYGYVKVGDVELARKLLEQAPVKDMLMYNTVLGGYVRYS 540
LF MP RD +N+++ GYVKVGD+E AR L ++ P ++++ + +++ GY
Sbjct: 185 GNAWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNG 244
Query: 539 EVEVMLQFFHDMPKKDLVSWNSIIGGLVRGRRISEAMKYFQHMQMVNVY-PNEVTLVSIL 363
+V F MP+K+LVSWN++IGG + ++ EA+K F+ +Q V+ PNEVT+VSIL
Sbjct: 245 DVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSIL 304
Query: 362 SGCAQVGALDVGKWLHSYIDRNNICLNNVIGTALVDMYSKCGELESAKSVFEKLPHRDVV 183
A +GAL++G+W+H ++ R + + T+LVDMY KCGE+ A+ VF ++P ++
Sbjct: 305 PAIATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETA 364
Query: 182 SWNAMIMGFSMNGQSRNTLELFSQMKIEGVLPNDATILGVMCACVHAGMVDEGRKCFASM 3
+WNA+I GF+MNG + LE FS+M+ EG+ PND T+ GV+ AC H G+V+EG+ F +M
Sbjct: 365 TWNALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAM 424
Score = 69.3 bits (168), Expect = 1e-09
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Frame = -1
Query: 479 NSIIGGLVRGRRISEAMKYFQHMQMVNVY-PNEVTLVSILSGCAQVGALDVGKWLHSYID 303
NS+I V R++++A ++ ++ + P+ T + CA A+ G H ++
Sbjct: 70 NSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETHGHVV 129
Query: 302 RNNICLNNVIGTALVDMYSKCGELESAKSVFEKLPHRDVVSWNAMIMGFSMNGQSRNTLE 123
+ C + + TALVDMY+K G L A+ VF +P R +VSW A+I G+ G N
Sbjct: 130 KIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWF 189
Query: 122 LFSQM 108
LF M
Sbjct: 190 LFKLM 194
>ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526049|gb|EEF28413.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 515
Score = 263 bits (673), Expect = 3e-68
Identities = 126/296 (42%), Positives = 193/296 (65%), Gaps = 1/296 (0%)
Frame = -1
Query: 887 KVGVELDVFVGTSLIEFYSGFESMKHAYQVFNELPIKDMVVWTAILSGFVNRFGDMERGR 708
K G + FVGT LI+ YS + AY+VF E+ +++V WT+++ GF+ D+E R
Sbjct: 192 KSGCRANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSMIKGFI-LCNDIETAR 250
Query: 707 ELFDKMPRRDLVVWNIMVYGYVKVGDVELARKLLEQAPVKDMLMYNTVLGGYVRYSEVEV 528
LF+ P+RD+V+WNIM+ GY+ +GD+ A++L + P KD++ +NT+L GY ++E
Sbjct: 251 RLFELAPQRDVVLWNIMISGYIDIGDLVRAQELFHKMPNKDVMSWNTLLNGYANGGDIEA 310
Query: 527 MLQFFHDMPKKDLVSWNSIIGGLVRGRRISEAMKYFQHMQMVN-VYPNEVTLVSILSGCA 351
+ F +MP++++ SWN +IGG E + F+ M + V PN+ TLV++LS CA
Sbjct: 311 CERLFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSACA 370
Query: 350 QVGALDVGKWLHSYIDRNNICLNNVIGTALVDMYSKCGELESAKSVFEKLPHRDVVSWNA 171
++GALD+GKW+H Y N N IG AL+DMY+KCG +E+A VF+ L +D++SWN
Sbjct: 371 RLGALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLISWNT 430
Query: 170 MIMGFSMNGQSRNTLELFSQMKIEGVLPNDATILGVMCACVHAGMVDEGRKCFASM 3
+I G +++G++ + L LFS+MK G P+ T LGV+CAC H G+VD+G F SM
Sbjct: 431 LIGGLAVHGRAADALYLFSRMKDAGEKPDGITFLGVLCACTHMGLVDDGFSYFQSM 486
Score = 70.5 bits (171), Expect = 5e-10
Identities = 35/150 (23%), Positives = 74/150 (49%)
Frame = -1
Query: 566 VLGGYVRYSEVEVMLQFFHDMPKKDLVSWNSIIGGLVRGRRISEAMKYFQHMQMVNVYPN 387
++ + + + + F +P+ ++ +WN+++ G E + F+ M +++ PN
Sbjct: 104 IITSFALFKRMRHAHKLFDQIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPN 163
Query: 386 EVTLVSILSGCAQVGALDVGKWLHSYIDRNNICLNNVIGTALVDMYSKCGELESAKSVFE 207
+ ++ ++ A G+ LH ++ ++ N +GT L+D+YS + SA VF
Sbjct: 164 CFSFPIVIKSSVKINAFKEGEELHCFVIKSGCRANPFVGTMLIDLYSSGRMIVSAYRVFG 223
Query: 206 KLPHRDVVSWNAMIMGFSMNGQSRNTLELF 117
++ R+VV+W +MI GF + LF
Sbjct: 224 EMIERNVVAWTSMIKGFILCNDIETARRLF 253
>ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 263 bits (671), Expect = 5e-68
Identities = 128/301 (42%), Positives = 196/301 (65%), Gaps = 3/301 (0%)
Frame = -1
Query: 896 EAFKVGVELDVFVGTSLIEFYSGFESMKHAYQVFNELPIKDMVVWTAILSGFV--NRFGD 723
E K G+E + FV T+LI+ YSG ++ AY++F + +++V WT+++SG++ NR
Sbjct: 148 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNR--- 204
Query: 722 MERGRELFDKMPRRDLVVWNIMVYGYVKVGDVELARKLLEQAPVKDMLMYNTVLGGYVRY 543
+ R LFD P RD+V+WNIMV GY+++GD++ ARKL + P +D + +NT+L GY
Sbjct: 205 VALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANN 264
Query: 542 SEVEVMLQFFHDMPKKDLVSWNSIIGGLVRGRRISEAMKYFQHMQMVN-VYPNEVTLVSI 366
+VE Q F +MP++++ SWN +IGG E ++ F+ M + V PN+ TLV++
Sbjct: 265 GDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTV 324
Query: 365 LSGCAQVGALDVGKWLHSYIDRNNICLNNVIGTALVDMYSKCGELESAKSVFEKLPHRDV 186
LS CA++GALD+GKW+H Y + +G AL+DMYSKCG +E+A VFE + +D+
Sbjct: 325 LSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDL 384
Query: 185 VSWNAMIMGFSMNGQSRNTLELFSQMKIEGVLPNDATILGVMCACVHAGMVDEGRKCFAS 6
++WN+MI G + +G + L LF QMKI G P+ T +GV+C+C H G+V+EG F S
Sbjct: 385 ITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNS 444
Query: 5 M 3
M
Sbjct: 445 M 445
Score = 68.6 bits (166), Expect = 2e-09
Identities = 46/188 (24%), Positives = 83/188 (44%)
Frame = -1
Query: 566 VLGGYVRYSEVEVMLQFFHDMPKKDLVSWNSIIGGLVRGRRISEAMKYFQHMQMVNVYPN 387
V+ +V ++ F P + WN+I G E + F M+ ++V PN
Sbjct: 63 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 122
Query: 386 EVTLVSILSGCAQVGALDVGKWLHSYIDRNNICLNNVIGTALVDMYSKCGELESAKSVFE 207
T +L CA++GA G+ +H + + + N + T L+D+YS + SA +F
Sbjct: 123 CFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFV 182
Query: 206 KLPHRDVVSWNAMIMGFSMNGQSRNTLELFSQMKIEGVLPNDATILGVMCACVHAGMVDE 27
+ R++V+W +MI G+ + + LF V+ + + G + G +
Sbjct: 183 GMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGY----IEIGDMKA 238
Query: 26 GRKCFASM 3
RK F +M
Sbjct: 239 ARKLFDTM 246
>ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like
[Cucumis sativus]
Length = 652
Score = 263 bits (671), Expect = 5e-68
Identities = 128/301 (42%), Positives = 196/301 (65%), Gaps = 3/301 (0%)
Frame = -1
Query: 896 EAFKVGVELDVFVGTSLIEFYSGFESMKHAYQVFNELPIKDMVVWTAILSGFV--NRFGD 723
E K G+E + FV T+LI+ YSG ++ AY++F + +++V WT+++SG++ NR
Sbjct: 190 EVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNR--- 246
Query: 722 MERGRELFDKMPRRDLVVWNIMVYGYVKVGDVELARKLLEQAPVKDMLMYNTVLGGYVRY 543
+ R LFD P RD+V+WNIMV GY+++GD++ ARKL + P +D + +NT+L GY
Sbjct: 247 VALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANN 306
Query: 542 SEVEVMLQFFHDMPKKDLVSWNSIIGGLVRGRRISEAMKYFQHMQMVN-VYPNEVTLVSI 366
+VE Q F +MP++++ SWN +IGG E ++ F+ M + V PN+ TLV++
Sbjct: 307 GDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTV 366
Query: 365 LSGCAQVGALDVGKWLHSYIDRNNICLNNVIGTALVDMYSKCGELESAKSVFEKLPHRDV 186
LS CA++GALD+GKW+H Y + +G AL+DMYSKCG +E+A VFE + +D+
Sbjct: 367 LSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDL 426
Query: 185 VSWNAMIMGFSMNGQSRNTLELFSQMKIEGVLPNDATILGVMCACVHAGMVDEGRKCFAS 6
++WN+MI G + +G + L LF QMKI G P+ T +GV+C+C H G+V+EG F S
Sbjct: 427 ITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNS 486
Query: 5 M 3
M
Sbjct: 487 M 487
Score = 68.6 bits (166), Expect = 2e-09
Identities = 46/188 (24%), Positives = 83/188 (44%)
Frame = -1
Query: 566 VLGGYVRYSEVEVMLQFFHDMPKKDLVSWNSIIGGLVRGRRISEAMKYFQHMQMVNVYPN 387
V+ +V ++ F P + WN+I G E + F M+ ++V PN
Sbjct: 105 VVTSWVGLKQMAHARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPN 164
Query: 386 EVTLVSILSGCAQVGALDVGKWLHSYIDRNNICLNNVIGTALVDMYSKCGELESAKSVFE 207
T +L CA++GA G+ +H + + + N + T L+D+YS + SA +F
Sbjct: 165 CFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFV 224
Query: 206 KLPHRDVVSWNAMIMGFSMNGQSRNTLELFSQMKIEGVLPNDATILGVMCACVHAGMVDE 27
+ R++V+W +MI G+ + + LF V+ + + G + G +
Sbjct: 225 GMLERNIVAWTSMISGYILCNRVALARRLFDLAPERDVVLWNIMVSGY----IEIGDMKA 280
Query: 26 GRKCFASM 3
RK F +M
Sbjct: 281 ARKLFDTM 288
>ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880-like
[Glycine max]
Length = 599
Score = 261 bits (666), Expect = 2e-67
Identities = 126/299 (42%), Positives = 198/299 (66%)
Frame = -1
Query: 899 GEAFKVGVELDVFVGTSLIEFYSGFESMKHAYQVFNELPIKDMVVWTAILSGFVNRFGDM 720
G K GV D++V T+L++ Y F + A +VF+E+ ++ V WTA++ G+ R GDM
Sbjct: 149 GMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYA-RCGDM 207
Query: 719 ERGRELFDKMPRRDLVVWNIMVYGYVKVGDVELARKLLEQAPVKDMLMYNTVLGGYVRYS 540
R LFD+M RD+V +N M+ GYVK+G V LAR+L + ++++ + +++ GY
Sbjct: 208 SEARRLFDEMEDRDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNG 267
Query: 539 EVEVMLQFFHDMPKKDLVSWNSIIGGLVRGRRISEAMKYFQHMQMVNVYPNEVTLVSILS 360
+VE F MP+K++ +WN++IGG + RR +A++ F+ MQ +V PNEVT+V +L
Sbjct: 268 DVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLP 327
Query: 359 GCAQVGALDVGKWLHSYIDRNNICLNNVIGTALVDMYSKCGELESAKSVFEKLPHRDVVS 180
A +GALD+G+W+H + R + + IGTAL+DMY+KCGE+ AK FE + R+ S
Sbjct: 328 AVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETAS 387
Query: 179 WNAMIMGFSMNGQSRNTLELFSQMKIEGVLPNDATILGVMCACVHAGMVDEGRKCFASM 3
WNA+I GF++NG ++ LE+F++M EG PN+ T++GV+ AC H G+V+EGR+ F +M
Sbjct: 388 WNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAM 446
Score = 90.1 bits (222), Expect = 6e-16
Identities = 59/264 (22%), Positives = 119/264 (45%), Gaps = 39/264 (14%)
Frame = -1
Query: 869 DVFVGTSLIEFYSGFESMKHAYQVFNELPIKDMVVWTAILSGFVNRFGDMERGRELFDKM 690
D+ ++I+ Y + A ++FNE+ +++V WT+++SG+ GD+E + +FD M
Sbjct: 221 DIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGN-GDVENAKLMFDLM 279
Query: 689 PRRDLVVWNIMVYGYVK-----------------------------------VGDVELAR 615
P +++ WN M+ GY + +G ++L R
Sbjct: 280 PEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGR 339
Query: 614 KL----LEQAPVKDMLMYNTVLGGYVRYSEVEVMLQFFHDMPKKDLVSWNSIIGGLVRGR 447
+ L + + + ++ Y + E+ F M +++ SWN++I G
Sbjct: 340 WIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNG 399
Query: 446 RISEAMKYFQHMQMVNVYPNEVTLVSILSGCAQVGALDVGKWLHSYIDRNNICLNNVIGT 267
EA++ F M PNEVT++ +LS C G ++ G+ + ++R I
Sbjct: 400 CAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAMERFGIAPQVEHYG 459
Query: 266 ALVDMYSKCGELESAKSVFEKLPH 195
+VD+ + G L+ A+++ + +P+
Sbjct: 460 CMVDLLGRAGCLDEAENLIQTMPY 483
Score = 86.3 bits (212), Expect = 9e-15
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 2/175 (1%)
Frame = -1
Query: 521 QFFHDMPKKDLVSWNSIIGGLVRGRRISEAMKYFQHM--QMVNVYPNEVTLVSILSGCAQ 348
+FF+ +D NS+I R+ S+ F+ + Q P+ T +++ GCA
Sbjct: 78 RFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPFTPDGYTFTALVKGCAT 137
Query: 347 VGALDVGKWLHSYIDRNNICLNNVIGTALVDMYSKCGELESAKSVFEKLPHRDVVSWNAM 168
A G LH + +N +C + + TALVDMY K G L SA+ VF+++ R VSW A+
Sbjct: 138 RVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAV 197
Query: 167 IMGFSMNGQSRNTLELFSQMKIEGVLPNDATILGVMCACVHAGMVDEGRKCFASM 3
I+G++ G LF +M+ ++ +A I G V G V R+ F M
Sbjct: 198 IVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGY----VKMGCVGLARELFNEM 248