BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00011916
         (898 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...   178   2e-42
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...   172   7e-41
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta...   170   5e-40
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   168   2e-39
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   163   6e-38

>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score =  178 bits (451), Expect = 2e-42
 Identities = 116/303 (38%), Positives = 160/303 (52%), Gaps = 11/303 (3%)
 Frame = -1

Query: 880  KPFQIFQHIIDHPEFLNEVKKVWSSS----VEGEPWFVLSQKLKNLKCALKSLNA-RLGN 716
            KPF+    +   P+FL  V+  W+SS    V     +  S+KLK LK  L+ L   +LG+
Sbjct: 546  KPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKLGD 605

Query: 715  LNSAVDKARNDLLNFQKALPNVPSPQQRNSEAILCNALSAALKSQEHFLKQKSKVHWLKV 536
            L     +A   L   Q      PS +    E       +   + +E FLKQKSK+HW+ V
Sbjct: 606  LPKRTREAHILLCEKQATTLANPSQETIAEELKAYTDWTHLSELEEGFLKQKSKLHWMNV 665

Query: 535  GDENNKYFFNACRGRWNINRIIALQNPNDPSGPLLSSHEEIADVAVNHFKNILGTAK--- 365
            GD NN YF  A + R   N I  ++ PN  +   L + EEI   A   F   L       
Sbjct: 666  GDGNNSYFHKAAQVRKMRNSIREIRGPNAET---LQTSEEIKGEAERFFNEFLNRQSGDF 722

Query: 364  ---PVECLPDGLSLPQ*SESIKLNLTRPMTATEILTALKSMPRNRSPGPDGYTAEFFIAA 194
                VE L + +S  + S + +  LTR +T  EI   L +MP N+SPGPDGYT+EFF A 
Sbjct: 723  HGISVEDLRNLMSY-RCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKAT 781

Query: 193  WSVVGNDVLNGVSSFFTDNVLPRSINSTAIALIPKQDNPTEMAHFRPTSCCNILYKCVAK 14
            WS+ G D +  + SFF    LP+ +N+T +ALIPK+D   EM  +RP SCCN+LYK ++K
Sbjct: 782  WSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISK 841

Query: 13   VLA 5
            +LA
Sbjct: 842  ILA 844


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score =  172 bits (437), Expect = 7e-41
 Identities = 113/306 (36%), Positives = 158/306 (51%), Gaps = 11/306 (3%)
 Frame = -1

Query: 889  KLNKPFQIFQHIIDHPEFLNEVKKVWSSS----VEGEPWFVLSQKLKNLKCALKSLNA-R 725
            K  +PF+    I +   F+  V+  W+ +    +     F  S+KLK LK  L++L   R
Sbjct: 134  KGKRPFKFVNVITEMEHFIPTVESYWNETEAIFMSTSSLFRFSKKLKGLKPLLRNLGKER 193

Query: 724  LGNLNSAVDKARNDLLNFQKALPNVPSPQQRNSEAILCNALSAALKSQEHFLKQKSKVHW 545
            LGNL     +A   L   Q      PSP     E             +E FLKQ+SK+HW
Sbjct: 194  LGNLVKQTKEAFETLCQKQAMKMANPSPSSMQEENEAYAKWDHIAVLEEKFLKQRSKLHW 253

Query: 544  LKVGDENNKYFFNACRGRWNINRIIALQNPNDPSGPLLSSHEEIADVAVNHFKNILGTAK 365
            L +GD NNK F  A   R   N I  +   +   G + S  E+I   A +HF+  L    
Sbjct: 254  LDIGDRNNKAFHRAVVAREAQNSIREIICHD---GSVASQEEKIKTEAEHHFREFLQLIP 310

Query: 364  ------PVECLPDGLSLPQ*SESIKLNLTRPMTATEILTALKSMPRNRSPGPDGYTAEFF 203
                   VE L D L   + S+S K  LT  ++A EI   + SMP ++SPGPDGYTAEF+
Sbjct: 311  NDFEGIAVEELQDLLPY-RCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGPDGYTAEFY 369

Query: 202  IAAWSVVGNDVLNGVSSFFTDNVLPRSINSTAIALIPKQDNPTEMAHFRPTSCCNILYKC 23
              AW+++G + +  + SFF    LP+ INST +ALIPK+    EM  +RP SCCN+LYK 
Sbjct: 370  KGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKV 429

Query: 22   VAKVLA 5
            ++K++A
Sbjct: 430  ISKIIA 435


>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1447

 Score =  170 bits (430), Expect = 5e-40
 Identities = 108/311 (34%), Positives = 163/311 (52%), Gaps = 19/311 (6%)
 Frame = -1

Query: 880  KPFQIFQHIIDHPEFLNEVKKVWSSSVEGEPWFV-------LSQKLKNLKCALKSL-NAR 725
            +PF+    + +  +F   V   W    E EP F+        S+KLK+LK  L++L   R
Sbjct: 657  RPFKFVNVLTEMEDFKPTVDSYWK---ETEPIFLSTSSLFRFSKKLKSLKPLLRNLAKER 713

Query: 724  LGNLNSAVDKARNDLLNFQKALPNVPSPQQRNSEAILCNALSAALKSQEHFLKQKSKVHW 545
            LGNL     +A + L   Q++  N P+P     E    +        +E FLK+KSK+HW
Sbjct: 714  LGNLVKKTREAYDTLCKKQESTLNNPTPNAMKEEVEAHDRWEHVAGLEEKFLKKKSKLHW 773

Query: 544  LKVGDENNKYFFNACRGRWNINRIIALQNPNDPSGPLLSSHEEIADVAVNHFKNILGTAK 365
            L  GD+NNK F  A   R   N I  +Q  +   G + +  +EI   A   F+  L    
Sbjct: 774  LDGGDKNNKAFHRAVVTREAQNSISEIQCQD---GSVTAKGDEIKAYAERFFREFL---- 826

Query: 364  PVECLP---DGLSLPQ*SESIKLN--------LTRPMTATEILTALKSMPRNRSPGPDGY 218
              + +P   +G+++    + +           LTR +TA EI   L SMP ++SPGPDG+
Sbjct: 827  --QLIPNEYEGVTMADLQDLLPFRCSETEHELLTRVVTAEEIKKVLFSMPNDKSPGPDGF 884

Query: 217  TAEFFIAAWSVVGNDVLNGVSSFFTDNVLPRSINSTAIALIPKQDNPTEMAHFRPTSCCN 38
            T+EFF A W ++GN+ +  + SFF    LP+ IN+T +ALIPK+    EM  +RP SCCN
Sbjct: 885  TSEFFKATWEILGNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKDYRPISCCN 944

Query: 37   ILYKCVAKVLA 5
            ++YK ++K++A
Sbjct: 945  VIYKVISKIIA 955


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  168 bits (425), Expect = 2e-39
 Identities = 109/314 (34%), Positives = 163/314 (51%), Gaps = 16/314 (5%)
 Frame = -1

Query: 898  NRTKLNKPFQIFQHIIDHPEFLNEVKKVWSSS----VEGEPWFVLSQKLKNLKCALKSL- 734
            N+ +  KPF+    + D  +F   V   W  +    +     F  S+ LK LK  ++S+ 
Sbjct: 243  NKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSMA 302

Query: 733  NARLGNLNSAVDKARNDLLNFQKALPNVPSPQQRNSEAILCNALSAALKSQEHFLKQKSK 554
              RLGNL+   ++A   L   Q      PS      E    +        +E +LKQKSK
Sbjct: 303  RDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEKYLKQKSK 362

Query: 553  VHWLKVGDENNKYFFNACRGRWNINRIIALQNPNDPSGPLLSSHEEIADVAVNHFKNILG 374
            +HW +VGD+N K F  A   R   N I  + + ND  G + +  +EI   A   F+  L 
Sbjct: 363  LHWCQVGDQNTKAFHRAAAAREAHNTIREILS-ND--GIVKTKGDEIKAEAERFFREFL- 418

Query: 373  TAKPVECLP---DGLSLPQ*--------SESIKLNLTRPMTATEILTALKSMPRNRSPGP 227
                 + +P   +G+++ +         S++ + +L RP+TA EI   L  MP ++SPGP
Sbjct: 419  -----QLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGP 473

Query: 226  DGYTAEFFIAAWSVVGNDVLNGVSSFFTDNVLPRSINSTAIALIPKQDNPTEMAHFRPTS 47
            DGYT+EFF A W ++G++    V SFFT   LP+ INST +ALIPK+    EM  +RP S
Sbjct: 474  DGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPIS 533

Query: 46   CCNILYKCVAKVLA 5
            CCN+LYK ++K++A
Sbjct: 534  CCNVLYKVISKIIA 547


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  163 bits (412), Expect = 6e-38
 Identities = 97/300 (32%), Positives = 154/300 (51%), Gaps = 7/300 (2%)
 Frame = -1

Query: 883  NKPFQIFQHIIDHPEFLNEVKKVWSS-SVEGEPWFVLSQKLKNLKCALKSLNAR-LGNLN 710
            NKPF++   ++ HPEF+ +++  W   + +G   F LS+K K LK  +++ N      L 
Sbjct: 244  NKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLE 303

Query: 709  SAVDKARNDLLNFQKALPNVPSPQQRNSEAILCNALSAALKSQEHFLKQKSKVHWLKVGD 530
              V +A  +L   Q  L   PS      E     + +    ++E FL QKS+V WLK GD
Sbjct: 304  KRVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGD 363

Query: 529  ENNKYFFNACRGRWNINRIIALQNPNDPSGPLLSSHEEIADVAVNHFKNILGTAKPVECL 350
             N  +F      R  IN I  L    D +G  + + +E+    V+ FK + G++  +   
Sbjct: 364  SNTTFFHRMMTARRAINEIHYLL---DQTGRRIENTDELQTHCVDFFKELFGSSSHLISA 420

Query: 349  P-----DGLSLPQ*SESIKLNLTRPMTATEILTALKSMPRNRSPGPDGYTAEFFIAAWSV 185
                  + L+  +  E+ +  L   ++  +I +   ++P N+SPGPDGYT+EFF   WS+
Sbjct: 421  EGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSI 480

Query: 184  VGNDVLNGVSSFFTDNVLPRSINSTAIALIPKQDNPTEMAHFRPTSCCNILYKCVAKVLA 5
            VG  ++  V  FF    L    NSTA+ ++PK+ N   +  FRP SCCN +YK ++K+LA
Sbjct: 481  VGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLA 540