BLASTX nr result
ID: Bupleurum21_contig00009929
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00009929
(2790 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera] 1274 0.0
ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sati... 1225 0.0
ref|XP_002520439.1| helicase, putative [Ricinus communis] gi|223... 1224 0.0
ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max] 1217 0.0
ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana] ... 1162 0.0
>ref|XP_002279903.2| PREDICTED: helicase SKI2W-like [Vitis vinifera]
Length = 1379
Score = 1274 bits (3297), Expect = 0.0
Identities = 652/926 (70%), Positives = 732/926 (79%), Gaps = 17/926 (1%)
Frame = +2
Query: 62 MDRIDVVNELPFRVGFTGHSGHLRIEPLSPVERSDPLKSLPDFILPPAFPRETPESIKEY 241
M+RI V ++ FRVGF+GHSGHLR+EPL PVER +PL SLPDFI PPAF RETPE+IKEY
Sbjct: 1 MNRIQVGHDASFRVGFSGHSGHLRLEPLPPVERPNPLSSLPDFISPPAFARETPETIKEY 60
Query: 242 IEEKYLLPRLDVDEFSPEKDGRQWEFDWFDKSKISLEPTLPRSVVVPTWELPFRRSSTSS 421
IE+ YLLPRLD DEFSPEK GRQW+FDWFD++K+ LEP+LPRSVVV WELPFRRS S
Sbjct: 61 IEDTYLLPRLDPDEFSPEKVGRQWDFDWFDRAKVPLEPSLPRSVVVQKWELPFRRSKKES 120
Query: 422 ASQKWDPSSIQVDVAELMAGSADSGVLPRIAGPPKDFVRGSISGRPFRPGGLDDSQTVGR 601
AS KW+P S +V+V++LM G+ D+G LPR+ GP KDF+RGSI+ RPFRPGGLDDSQ++ R
Sbjct: 121 ASGKWEPISEEVEVSDLMVGAQDTGPLPRMVGPAKDFIRGSINNRPFRPGGLDDSQSLDR 180
Query: 602 VLPDGAVNGDWVREVLTGGASQSLPPSFKQGMDFGNLKAHSHSWNDHGDQGEPKSTSDAK 781
+ P GA NG+WV+EVL GG + +PPSFKQG+D G+LKA+SHSW + Q K S+
Sbjct: 181 IPPLGASNGEWVQEVLNGGPALVVPPSFKQGLDLGDLKAYSHSWKVYKGQSALKGKSEEN 240
Query: 782 -TELSVQFDDLFKRAWDED-VTESAGDGI-------ELQENESNVEDPIDLDSIPPQTGS 934
+LS+QFDDL K+AW+ED V ES DGI L N V D P++ S
Sbjct: 241 LNKLSIQFDDLLKKAWEEDDVAESKEDGIICTFYILALGTNVCKVTDSWAKSCHSPESDS 300
Query: 935 STLDV--------SGVGDIVEASVLDEILSVKSEDSTSRLTEGIHTSGRQQKEAWAVTGA 1090
L+V S VGD+ E+SVLDEILSV+S S L GRQ+KEAWAV+G
Sbjct: 301 IKLEVQLDEVEASSNVGDL-ESSVLDEILSVES-GSKPGLDGTSDDGGRQKKEAWAVSGG 358
Query: 1091 SDSIAERFHDLVPDKALDFPFELDDFQKEAIYYLEKGDSVFVAAHTSAGKTAVAEYAFAL 1270
++ IA+ FH+LVPD ALDFPFELD FQKEAIYYLEKGDSVFVAAHTSAGKT VAEYAFAL
Sbjct: 359 NEGIADHFHELVPDMALDFPFELDTFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFAL 418
Query: 1271 ATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYK 1450
A+KHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYK
Sbjct: 419 ASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYK 478
Query: 1451 GADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGR 1630
GADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINI+LLSATVPNT+EFADWIGR
Sbjct: 479 GADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGR 538
Query: 1631 TKQKQIRVTGTTRRPVPLEHCIFYSGEFFKVCENEKFLPLGFKAAKDAYKKKSMXXXXXX 1810
TKQKQIRVTGTT+RPVPLEHCIFYSGE +K+CE+E FLP G K AKD +KKK++
Sbjct: 539 TKQKQIRVTGTTKRPVPLEHCIFYSGELYKICESETFLPQGLKTAKDVHKKKNLSTGGGG 598
Query: 1811 XXXXXXXXXXXHDVARMQKRETSIRSKQNMXXXXXXXXXXXXXXXXXXXXXXXQNNWGSR 1990
HD AR Q+RE R KQN Q+NWGSR
Sbjct: 599 SGTYSGPPSAAHDGARAQRRENPGRGKQNKYSGSQKVGNFYGTGGGNQNSSGSQSNWGSR 658
Query: 1991 RSEASXXXXXXXXXXXXXXXPVVIFCFSKIRCDKSADHMTGVDLTSNSEKSDIRIFCDKA 2170
RSEAS PVVIFCFSK RCD SAD MTG+DLTS+SEK +I +FC++A
Sbjct: 659 RSEASLWLLLINKLSKKSLLPVVIFCFSKNRCDISADKMTGIDLTSSSEKHEIHVFCERA 718
Query: 2171 FSRLKGSDRNLPXXXXXXXXXXXGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAM 2350
FSRLKGSDRNLP GIGVHHAGLLPIVKEVVEMLFCRGV+KVLFSTETFAM
Sbjct: 719 FSRLKGSDRNLPQVIRVQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAM 778
Query: 2351 GVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPEEK 2530
GVNAPARTVVFD+LRKFDG+EFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIP+E+
Sbjct: 779 GVNAPARTVVFDSLRKFDGREFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPDER 838
Query: 2531 DLKNVIIGSATRLESQFRLTYIMIMHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLM 2710
DLK+VI+GSATRL SQFRLTYIMI+HLLRVEELKVEDMLKRSFAEFHAQKKLPE+QQLLM
Sbjct: 839 DLKHVIVGSATRLASQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLM 898
Query: 2711 RKLAQPTKAIECIKGEPAIEEYYELY 2788
RKLAQPTK IECIKGEP IEEYY++Y
Sbjct: 899 RKLAQPTKTIECIKGEPTIEEYYDMY 924
>ref|XP_004145322.1| PREDICTED: helicase SKI2W-like [Cucumis sativus]
Length = 1352
Score = 1225 bits (3169), Expect = 0.0
Identities = 627/916 (68%), Positives = 710/916 (77%), Gaps = 7/916 (0%)
Frame = +2
Query: 62 MDRIDVVNELPFRVGFTGHSGHLRIEPLSPVERSDPLKSLPDFILPPAFPRETPESIKEY 241
MD I+ EL FRVGF+GHSGHLR+EPLS VERS P++SLPDFILPPAFP+ETPE+IK Y
Sbjct: 1 MDPIEATKELSFRVGFSGHSGHLRVEPLSTVERSTPIRSLPDFILPPAFPKETPETIKNY 60
Query: 242 IEEKYLLPRLDVDEFSPEKDGRQWEFDWFDKSKISLEPTLPRSVVVPTWELPFRR-SSTS 418
IEE YL PRLD DEFSPEK GRQW+FDWF+ +K+SL+P+ PRSVVVPTW LPF R
Sbjct: 61 IEETYLQPRLDPDEFSPEKVGRQWDFDWFEMAKVSLDPSPPRSVVVPTWVLPFERPKKDG 120
Query: 419 SASQKWDPSSIQVDVAELMAGSADSGVLPRIAGPPKDFVRGSISGRPFRPGGLDDSQTVG 598
+A W+P S QVDV+EL + +SG PR+ GP KDFVRGSI+ RPFRPGGLDDSQ++
Sbjct: 121 AAGGTWEPDSRQVDVSELNVETQESGSQPRVPGPAKDFVRGSINNRPFRPGGLDDSQSID 180
Query: 599 RVLPDGAVNGDWVREVLTGGASQSLPPSFKQGMDFGNLKAHSHSWNDHGDQGEPK---ST 769
R+LPD A NG+WV EVL GG +Q +PP K+G+D G+LK + +SWN + +Q S
Sbjct: 181 RILPDAASNGEWVHEVLNGGPAQFIPPILKKGLDLGDLKEYPNSWNVYENQSSSSFKTSP 240
Query: 770 SDAKTELSVQFDDLFKRAWDEDVTESAGDGIELQENESNVEDPIDLDSIPPQTGSSTLDV 949
+ +ELSVQFDDLFK+AW+ED ES DG+ ++ +SI + L+
Sbjct: 241 IENLSELSVQFDDLFKKAWEEDAIESVEDGVYSGQSPK-------AESIKSEDRVRELEA 293
Query: 950 SGVGDIVEASVLDEILSVKSED---STSRLTEGIHTSGRQQKEAWAVTGASDSIAERFHD 1120
+ S LDEILS++S S+ + TE G Q+KEAW V G + I+ RFHD
Sbjct: 294 ISIAPAPGISALDEILSLESGGFSLSSDQATE----VGAQKKEAWVVVGGREDISLRFHD 349
Query: 1121 LVPDKALDFPFELDDFQKEAIYYLEKGDSVFVAAHTSAGKTAVAEYAFALATKHCTRAVY 1300
LVPD ALDFPFELD FQKEAIY+LEKGDSVFVAAHTSAGKT VAEYAFALATKHCTRAVY
Sbjct: 350 LVPDMALDFPFELDTFQKEAIYHLEKGDSVFVAAHTSAGKTVVAEYAFALATKHCTRAVY 409
Query: 1301 TAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEW 1480
TAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLY+GADIIRDIEW
Sbjct: 410 TAPIKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEW 469
Query: 1481 VIFDEVHYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKQIRVTG 1660
VIFDEVHYVND+ERGVVWEEVIIMLPRHINI+LLSATVPNT+EFADWIGRTKQK+I VTG
Sbjct: 470 VIFDEVHYVNDIERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKRIHVTG 529
Query: 1661 TTRRPVPLEHCIFYSGEFFKVCENEKFLPLGFKAAKDAYKKKSMXXXXXXXXXXXXXXXX 1840
T +RPVPLEHCIFYSGE +K+CE+E FL G KAAKDA KKK+
Sbjct: 530 TAKRPVPLEHCIFYSGELYKICESEIFLSHGLKAAKDASKKKNSSVVGGAGGSHAGASVA 589
Query: 1841 XHDVARMQKRETSIRSKQNMXXXXXXXXXXXXXXXXXXXXXXXQNNWGSRRSEASXXXXX 2020
+D + +K E+ RSKQN NNWGSRRS+AS
Sbjct: 590 -NDGTKNRKVESFNRSKQNKHSGSQNLGNFSGTSWGNQKNGDGHNNWGSRRSDASLWLLL 648
Query: 2021 XXXXXXXXXXPVVIFCFSKIRCDKSADHMTGVDLTSNSEKSDIRIFCDKAFSRLKGSDRN 2200
PVVIFCFSK RCDKSAD++ +DLTS+SEKS+IR+FCDKAFSRLKGSDR+
Sbjct: 649 INRLSKKSLLPVVIFCFSKNRCDKSADNIYSIDLTSSSEKSEIRVFCDKAFSRLKGSDRS 708
Query: 2201 LPXXXXXXXXXXXGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVV 2380
LP GIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVV
Sbjct: 709 LPQIVRVQGLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVV 768
Query: 2381 FDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPEEKDLKNVIIGSA 2560
FDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTV+VMCR+EIPEEKDLK VI+G+A
Sbjct: 769 FDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVIVMCREEIPEEKDLKRVIVGTA 828
Query: 2561 TRLESQFRLTYIMIMHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKAI 2740
T+LESQFRLTYIMI+HLLRVEELKVEDMLKRSFAEFHAQKKLPE+QQLLMRKLAQPT+ I
Sbjct: 829 TKLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQPTRTI 888
Query: 2741 ECIKGEPAIEEYYELY 2788
ECIKGE IEEYY+LY
Sbjct: 889 ECIKGEATIEEYYDLY 904
>ref|XP_002520439.1| helicase, putative [Ricinus communis] gi|223540281|gb|EEF41852.1|
helicase, putative [Ricinus communis]
Length = 1335
Score = 1224 bits (3168), Expect = 0.0
Identities = 629/910 (69%), Positives = 710/910 (78%), Gaps = 1/910 (0%)
Frame = +2
Query: 62 MDRIDVVNELPFRVGFTGHSGHLRIEPLSPVE-RSDPLKSLPDFILPPAFPRETPESIKE 238
M+RI NEL FRVGF+G+SGHLR+EPLS VE R+DP+KSLPDFILPPAFPRET ESIKE
Sbjct: 1 MNRIQATNELSFRVGFSGYSGHLRVEPLSTVEGRTDPVKSLPDFILPPAFPRETRESIKE 60
Query: 239 YIEEKYLLPRLDVDEFSPEKDGRQWEFDWFDKSKISLEPTLPRSVVVPTWELPFRRSSTS 418
YIEE+YLLPRLD D FSPE GRQW+FDWF+K+ + L P+LPR+VVVPTWE PFRR ++
Sbjct: 61 YIEEEYLLPRLDSDVFSPENAGRQWDFDWFEKANVLLNPSLPRAVVVPTWESPFRRQKST 120
Query: 419 SASQKWDPSSIQVDVAELMAGSADSGVLPRIAGPPKDFVRGSISGRPFRPGGLDDSQTVG 598
S W+P S+Q+DV+EL+A DS LPRIAGP KDFVRGSI+ RPFRPGGLDDSQ++
Sbjct: 121 SEQGIWEPKSVQMDVSELIA--QDSSSLPRIAGPAKDFVRGSINNRPFRPGGLDDSQSLE 178
Query: 599 RVLPDGAVNGDWVREVLTGGASQSLPPSFKQGMDFGNLKAHSHSWNDHGDQGEPKSTSDA 778
++LP GA NG+W+REVL GG +QS+PPS K+G+D G+LKA+ SWN + DQ + S
Sbjct: 179 KILPAGAANGEWLREVLNGGPAQSIPPSLKKGLDLGDLKAYPSSWNVYKDQSPSDTASRE 238
Query: 779 KTELSVQFDDLFKRAWDEDVTESAGDGIELQENESNVEDPIDLDSIPPQTGSSTLDVSGV 958
K D+ K D DV + L ++ES D + S +D+ G
Sbjct: 239 KLVCHSSKDEYLKS--DVDVVPE----VHLLKDESRKSD----------SEESKIDIQGS 282
Query: 959 GDIVEASVLDEILSVKSEDSTSRLTEGIHTSGRQQKEAWAVTGASDSIAERFHDLVPDKA 1138
E SVLDEILSV S TSR G ++K+ WA++G S+ IAE F+ L+PD A
Sbjct: 283 VFETEVSVLDEILSVDSGGLTSRSDGTGDGGGHKEKKGWALSGNSEWIAEHFYQLLPDTA 342
Query: 1139 LDFPFELDDFQKEAIYYLEKGDSVFVAAHTSAGKTAVAEYAFALATKHCTRAVYTAPIKT 1318
LDFPFELD FQKEAIYYLEKGDSVFVAAHTSAGKT VAEYAFALA+KHCTRAVYTAPIKT
Sbjct: 343 LDFPFELDTFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKT 402
Query: 1319 ISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEV 1498
ISNQKYRDFCGKFDVGLLTGDVSLRPEA+CLIMTTEILRSMLY+GADIIRDIEWVIFDEV
Sbjct: 403 ISNQKYRDFCGKFDVGLLTGDVSLRPEANCLIMTTEILRSMLYRGADIIRDIEWVIFDEV 462
Query: 1499 HYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKQIRVTGTTRRPV 1678
HYVND ERGVVWEEVIIMLPRH+NI+LLSATVPNTVEFADWIGRTKQK+I+VTGTT+RPV
Sbjct: 463 HYVNDAERGVVWEEVIIMLPRHVNIVLLSATVPNTVEFADWIGRTKQKKIQVTGTTKRPV 522
Query: 1679 PLEHCIFYSGEFFKVCENEKFLPLGFKAAKDAYKKKSMXXXXXXXXXXXXXXXXXHDVAR 1858
PLEHC+FYSGE +K+CENE F+P G + AKDA+KKK+ D A
Sbjct: 523 PLEHCLFYSGELYKICENETFIPQGLRVAKDAHKKKN-------TSAVSSGSLALRDGAH 575
Query: 1859 MQKRETSIRSKQNMXXXXXXXXXXXXXXXXXXXXXXXQNNWGSRRSEASXXXXXXXXXXX 2038
+KRE R+KQN QNNWGSRRSEAS
Sbjct: 576 GKKREYLNRNKQNKHFGSQNAGSFSGTSWGNQNNGNGQNNWGSRRSEASLWLQLVNKLSK 635
Query: 2039 XXXXPVVIFCFSKIRCDKSADHMTGVDLTSNSEKSDIRIFCDKAFSRLKGSDRNLPXXXX 2218
PVVIFCFSK RCDKSAD M+G DLTS+SEKS+IR+FCDKAFSRLKGSDRNLP
Sbjct: 636 KSLLPVVIFCFSKNRCDKSADGMSGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQIVR 695
Query: 2219 XXXXXXXGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRK 2398
GIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRK
Sbjct: 696 VQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRK 755
Query: 2399 FDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPEEKDLKNVIIGSATRLESQ 2578
FDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTV+VMCRDEIP+E+DLK+VI+GSATRLESQ
Sbjct: 756 FDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVIVMCRDEIPDERDLKHVIVGSATRLESQ 815
Query: 2579 FRLTYIMIMHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKAIECIKGE 2758
FRLTYIMI+HLLRVEELKVEDMLKRSFAEFH QKKLPE QQ+LMRKLAQPTKAIECIKGE
Sbjct: 816 FRLTYIMILHLLRVEELKVEDMLKRSFAEFHTQKKLPETQQVLMRKLAQPTKAIECIKGE 875
Query: 2759 PAIEEYYELY 2788
P IEEYY+++
Sbjct: 876 PDIEEYYDMF 885
>ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]
Length = 1342
Score = 1217 bits (3148), Expect = 0.0
Identities = 626/911 (68%), Positives = 711/911 (78%), Gaps = 2/911 (0%)
Frame = +2
Query: 62 MDRIDVVNELPFRVGFTGHSGHLRIEPLSPVERSDPLKSLPDFILPPAFPRETPESIKEY 241
MD I NEL FRVGF+GHSGHLR+EPLS ER +PL+S+PDFI PPAFP ETPESIK+Y
Sbjct: 1 MDPIQAANELAFRVGFSGHSGHLRLEPLSTEERRNPLRSIPDFIPPPAFPSETPESIKKY 60
Query: 242 IEEKYLLPRLDVDEFSPEKDGRQWEFDWFDKSKISLEPTLPRSVVVPTWELPFRRSSTSS 421
IEE YL PRLD D+FSPEK GRQWEFDWFD++K+ LEP+LPR++VVP WE PFRRS+ S
Sbjct: 61 IEETYLQPRLDPDDFSPEKVGRQWEFDWFDRAKVPLEPSLPRTMVVPVWEPPFRRSNNGS 120
Query: 422 ASQKWDPSSIQVDVAELMAGSADSGVLPRIAGPPKDFVRGSISGRPFRPGGLDDSQTVGR 601
W+P +VDVA+L +G+ +SG LPR +G KDFVRGSI+ RPFRPGGLDDS+++ R
Sbjct: 121 VKGIWEPKFEEVDVADLTSGAVESGPLPRTSG--KDFVRGSINNRPFRPGGLDDSRSLDR 178
Query: 602 VLPDGAVNGDWVREVLTGGASQSLPPSFKQGMDFGNLKAHSHSWNDHGDQGEPKSTSDAK 781
+LP+GA NG+WV E+L GG +Q++PPS KQG+DFG LK + SWN + KS+SD K
Sbjct: 179 ILPEGASNGEWVHEILNGGPAQTIPPSLKQGLDFGMLKPYPCSWNVCKEANSLKSSSDEK 238
Query: 782 TE-LSVQFDDLFKRAWDEDVTESAGDGIELQENESNVEDPIDLDSIPPQTGSSTLDVSGV 958
LSVQFDDLFK+AWDED DG L E +++I + T +VS
Sbjct: 239 LSGLSVQFDDLFKKAWDEDAVGDQEDG-HLSE----------VETITLEAEVGTTEVSSR 287
Query: 959 GDIVEASVLDEILSVKSEDSTSRLTEGIHTSGRQQKEAWAVTGASDSIAERFHDLVPDKA 1138
E S LD+ILS SE S L G+Q+KEAWA+ S+ I + FH+LVPD A
Sbjct: 288 AHESEMS-LDDILSADSEGSKLHLDGFNDEIGQQKKEAWAIHETSEQIVDSFHELVPDMA 346
Query: 1139 LDFPFELDDFQKEAIYYLEKGDSVFVAAHTSAGKTAVAEYAFALATKHCTRAVYTAPIKT 1318
L+FPFELD FQKEAIYYLEKG+SVFVAAHTSAGKT VAEYAFALA+KHCTRAVYTAPIKT
Sbjct: 347 LEFPFELDAFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKT 406
Query: 1319 ISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEV 1498
ISNQKYRD CGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLY+GADIIRDIEWVIFDEV
Sbjct: 407 ISNQKYRDLCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEV 466
Query: 1499 HYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKQIRVTGTTRRPV 1678
HYVNDVERGVVWEEVIIMLPRHINI+LLSATVPNT+EFADWIGRTKQK+IRVTGTT+RPV
Sbjct: 467 HYVNDVERGVVWEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPV 526
Query: 1679 PLEHCIFYSGEFFKVCENEKFLPLGFKAA-KDAYKKKSMXXXXXXXXXXXXXXXXXHDVA 1855
PLEHC+FYSGE +K+CE+EKFLP G KAA K+A +KK++ HD A
Sbjct: 527 PLEHCLFYSGELYKICESEKFLPQGLKAAKKEASRKKNL--TAGGGSGPKPGISPGHDKA 584
Query: 1856 RMQKRETSIRSKQNMXXXXXXXXXXXXXXXXXXXXXXXQNNWGSRRSEASXXXXXXXXXX 2035
R+QKRE + +K + Q+NW RR++AS
Sbjct: 585 RVQKRENTSHTKHH-------GANFYGTGRGYQNNGNGQSNWELRRADASMLLMLINKLS 637
Query: 2036 XXXXXPVVIFCFSKIRCDKSADHMTGVDLTSNSEKSDIRIFCDKAFSRLKGSDRNLPXXX 2215
PVVIFCFSK RCDKSAD +TG DLTS+SEKS+IR+FCDKAFSRLKGSD+NLP
Sbjct: 638 KKSLLPVVIFCFSKNRCDKSADSLTGTDLTSSSEKSEIRLFCDKAFSRLKGSDKNLPQVV 697
Query: 2216 XXXXXXXXGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLR 2395
GIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLR
Sbjct: 698 RVQNLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLR 757
Query: 2396 KFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPEEKDLKNVIIGSATRLES 2575
KFDGKEFRQLL GEYTQMAGRAGRRGLDKIGTV++MCRDE+PEE DL+ VI+GSATRLES
Sbjct: 758 KFDGKEFRQLLAGEYTQMAGRAGRRGLDKIGTVILMCRDELPEESDLEPVIVGSATRLES 817
Query: 2576 QFRLTYIMIMHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKAIECIKG 2755
QFRLTYIMI+HLLRVEELKVEDMLKRSFAEFHAQKKLPE QQLL RKL QPTKAIEC+KG
Sbjct: 818 QFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEMQQLLKRKLNQPTKAIECLKG 877
Query: 2756 EPAIEEYYELY 2788
EP IEEYY+LY
Sbjct: 878 EPTIEEYYDLY 888
>ref|NP_190280.5| antiviral helicase SKI2 [Arabidopsis thaliana]
gi|332644703|gb|AEE78224.1| antiviral helicase SKI2
[Arabidopsis thaliana]
Length = 1347
Score = 1162 bits (3007), Expect = 0.0
Identities = 597/913 (65%), Positives = 694/913 (76%), Gaps = 4/913 (0%)
Frame = +2
Query: 62 MDRIDVVNELPFRVGFTGHSGHLRIEPLSPVERSDPLKSLPDFILPPAFPRETPESIKEY 241
M++++ NEL FRVGF+GH GHLR+EP ER D L SLPDF+ PPAF +ET ESIK++
Sbjct: 1 MNKVEAGNELGFRVGFSGHGGHLRVEPFYTAERDDALNSLPDFVSPPAFAKETKESIKKH 60
Query: 242 IEEKYLLPRLDVDEFSPEKDGRQWEFDWFDKSKISLEPTLPRSVVVPTWELPFRRSSTSS 421
IEEKYL+PRL+ D+FS EK QW+FDWF + K+ L+P+LPRSVVVPTWELPFRR +
Sbjct: 61 IEEKYLIPRLEPDQFSAEKAENQWDFDWFSRVKMPLQPSLPRSVVVPTWELPFRRQKEDT 120
Query: 422 ASQKWDPSSIQVDVAELMAGSADSGVLPRIAGPPKDFVRGSISGRPFRPGGLDDSQTVGR 601
+ W+P S++VD++E M G DSG PR+ GPPKDF+RGS++ RPFRPGGL+DSQ+ R
Sbjct: 121 ENGAWEPKSVEVDLSEQMYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSER 180
Query: 602 VLPDGAVNGDWVREVLTGGASQSLPPSFKQGMDFGNLKAHSHSWNDHGDQGEPKSTSDAK 781
VLP+G +G WV+E+L GG +Q++PPSFKQ +D G+L + +W+ + D + SD
Sbjct: 181 VLPEGVSSGQWVQELLNGGPAQTVPPSFKQSLDLGDLMPYPQTWSVYEDHSSHGNASDEN 240
Query: 782 T-ELSVQFDDLFKRAWDEDV-TESAGDGIELQENESNVEDPIDLDSIPPQTGSSTLDVSG 955
+ +LS+QFDDLFK+AW+ED +E GD ++ + E P ++ P S + +VS
Sbjct: 241 SSKLSIQFDDLFKKAWEEDTFSELEGD-----DHTAGSESP-KAEAEPDAKASISNEVSK 294
Query: 956 VGDIVEASVLDEILSVKSEDSTSRLTEGIHTSGRQQ--KEAWAVTGASDSIAERFHDLVP 1129
G + +VLDEILS S + E + S +Q KE WA G S IA+RF++LVP
Sbjct: 295 -GLETDVTVLDEILS--SAKTAIMSEEAVTGSSDKQLRKEGWATKGDSQDIADRFYELVP 351
Query: 1130 DKALDFPFELDDFQKEAIYYLEKGDSVFVAAHTSAGKTAVAEYAFALATKHCTRAVYTAP 1309
D A++FPFELD+FQKEAI LEKG+SVFVAAHTSAGKT VAEYAFALATKHCTRAVYTAP
Sbjct: 352 DMAIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAP 411
Query: 1310 IKTISNQKYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIF 1489
IKTISNQKYRDFCGKFDVGLLTGDVS+RPEASCLIMTTEILRSMLY+GADIIRDIEWVIF
Sbjct: 412 IKTISNQKYRDFCGKFDVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWVIF 471
Query: 1490 DEVHYVNDVERGVVWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKQIRVTGTTR 1669
DEVHYVNDVERGVVWEEVIIMLPRHIN +LLSATVPNT EFADWIGRTKQK+IRVTGTT+
Sbjct: 472 DEVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTK 531
Query: 1670 RPVPLEHCIFYSGEFFKVCENEKFLPLGFKAAKDAYKKKSMXXXXXXXXXXXXXXXXXHD 1849
RPVPLEHC+FYSGE +KVCENE FL G K AKD+ KKK+ D
Sbjct: 532 RPVPLEHCLFYSGELYKVCENEVFLSKGIKDAKDSQKKKN-SNAVSVAPKQQMGSSAHQD 590
Query: 1850 VARMQKRETSIRSKQNMXXXXXXXXXXXXXXXXXXXXXXXQNNWGSRRSEASXXXXXXXX 2029
++ QK E R KQN QNN RRS AS
Sbjct: 591 GSKSQKHEAHSRGKQN-------KHSSVKDVGKSSYSGNSQNNGAFRRSAASNWLLLINK 643
Query: 2030 XXXXXXXPVVIFCFSKIRCDKSADHMTGVDLTSNSEKSDIRIFCDKAFSRLKGSDRNLPX 2209
PVV+FCFSK CD+ AD +TG DLTS+SEKS+IR+FCDKAFSRLKGSDRNLP
Sbjct: 644 LSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQ 703
Query: 2210 XXXXXXXXXXGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDT 2389
GIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFD
Sbjct: 704 VLRLQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDA 763
Query: 2390 LRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEIPEEKDLKNVIIGSATRL 2569
LRKFDGKEFRQLLPGEYTQMAGRAGRRGLDK GTVVVMCRDE+P+E DL+ VI+GSATRL
Sbjct: 764 LRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDEVPDESDLRRVIVGSATRL 823
Query: 2570 ESQFRLTYIMIMHLLRVEELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKAIECI 2749
ESQFRLTYIMI+HLLRVEELKVEDMLKRSFAEFHAQKKLPE+QQLLM K + PTK IECI
Sbjct: 824 ESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMIKRSLPTKHIECI 883
Query: 2750 KGEPAIEEYYELY 2788
KGEPAIE+YY++Y
Sbjct: 884 KGEPAIEDYYDMY 896