BLASTX nr result

ID: Bupleurum21_contig00009879 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00009879
         (421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266662.1| PREDICTED: uncharacterized protein LOC100242...   166   1e-39
emb|CAN68081.1| hypothetical protein VITISV_021806 [Vitis vinifera]   166   1e-39
ref|XP_003628983.1| RING-H2 finger protein ATL5F [Medicago trunc...   162   3e-38
ref|XP_002304393.1| predicted protein [Populus trichocarpa] gi|2...   160   8e-38
ref|NP_001146059.1| uncharacterized protein LOC100279590 [Zea ma...   159   2e-37

>ref|XP_002266662.1| PREDICTED: uncharacterized protein LOC100242504 [Vitis vinifera]
           gi|296085502|emb|CBI29234.3| unnamed protein product
           [Vitis vinifera]
          Length = 553

 Score =  166 bits (421), Expect = 1e-39
 Identities = 80/141 (56%), Positives = 104/141 (73%), Gaps = 2/141 (1%)
 Frame = -1

Query: 418 QQHTIQENCDVEKPENI--FEDEETRAAFESWKSKTYSLTVPLRVVALRSSVPPLWIKNF 245
           Q+  IQ++  V K E+    ED+E + AF+ WKSK Y+LTVPLR+V LR S+PP W+K+F
Sbjct: 114 QEQRIQDSDGVGKSEDTENLEDKELKEAFKRWKSKPYALTVPLRIVTLRGSLPPSWVKDF 173

Query: 244 MQAQGKRAKLRVESRGSISDIFDELSMAFSKRDAAPKSAIAADIVSLGDTWLSFAINKGL 65
           MQ+QG+R +L    RGS+ DIF EL    SK    PKSA+AADIV++GD+WL  AINKG+
Sbjct: 174 MQSQGRRLRLLSNFRGSLQDIFSELCRPLSKGKIEPKSALAADIVTVGDSWLDLAINKGI 233

Query: 64  IEPIQNIEEQEWFAGLSDKWK 2
           IEPIQ +E+Q+WF GLS KWK
Sbjct: 234 IEPIQGVEDQDWFRGLSYKWK 254


>emb|CAN68081.1| hypothetical protein VITISV_021806 [Vitis vinifera]
          Length = 875

 Score =  166 bits (421), Expect = 1e-39
 Identities = 80/141 (56%), Positives = 104/141 (73%), Gaps = 2/141 (1%)
 Frame = -1

Query: 418 QQHTIQENCDVEKPENI--FEDEETRAAFESWKSKTYSLTVPLRVVALRSSVPPLWIKNF 245
           Q+  IQ++  V K E+    ED+E + AF+ WKSK Y+LTVPLR+V LR S+PP W+K+F
Sbjct: 422 QEQRIQDSDGVGKSEDTENLEDKELKEAFKRWKSKPYALTVPLRIVTLRGSLPPSWVKDF 481

Query: 244 MQAQGKRAKLRVESRGSISDIFDELSMAFSKRDAAPKSAIAADIVSLGDTWLSFAINKGL 65
           MQ+QG+R +L    RGS+ DIF EL    SK    PKSA+AADIV++GD+WL  AINKG+
Sbjct: 482 MQSQGRRLRLLSNFRGSLQDIFSELCRPLSKGKIEPKSALAADIVTVGDSWLDLAINKGI 541

Query: 64  IEPIQNIEEQEWFAGLSDKWK 2
           IEPIQ +E+Q+WF GLS KWK
Sbjct: 542 IEPIQGVEDQDWFRGLSYKWK 562


>ref|XP_003628983.1| RING-H2 finger protein ATL5F [Medicago truncatula]
           gi|355523005|gb|AET03459.1| RING-H2 finger protein ATL5F
           [Medicago truncatula]
          Length = 786

 Score =  162 bits (409), Expect = 3e-38
 Identities = 75/142 (52%), Positives = 105/142 (73%), Gaps = 3/142 (2%)
 Frame = -1

Query: 418 QQHTIQENCDVEKP---ENIFEDEETRAAFESWKSKTYSLTVPLRVVALRSSVPPLWIKN 248
           Q+ TIQ++ D  K    ENI  D+E  A+F +WKSKTY+LTVPL+VVALR S+PP WIK+
Sbjct: 112 QEQTIQDDNDARKHDANENIDVDKELEASFNAWKSKTYALTVPLKVVALRGSIPPSWIKD 171

Query: 247 FMQAQGKRAKLRVESRGSISDIFDELSMAFSKRDAAPKSAIAADIVSLGDTWLSFAINKG 68
           F+ +QG R K +V+   ++  IF +LS+ F+K D  P +A+AADIV +GD+WL FA+ K 
Sbjct: 172 FINSQGNRMKFKVKYYATLESIFSDLSIPFTKGDHVPTTALAADIVGIGDSWLKFAVEKA 231

Query: 67  LIEPIQNIEEQEWFAGLSDKWK 2
           +IEPI+++E QEWF  L++KWK
Sbjct: 232 IIEPIKDVEGQEWFKNLAEKWK 253


>ref|XP_002304393.1| predicted protein [Populus trichocarpa] gi|222841825|gb|EEE79372.1|
           predicted protein [Populus trichocarpa]
          Length = 424

 Score =  160 bits (406), Expect = 8e-38
 Identities = 72/122 (59%), Positives = 100/122 (81%), Gaps = 1/122 (0%)
 Frame = -1

Query: 364 EDEETRAA-FESWKSKTYSLTVPLRVVALRSSVPPLWIKNFMQAQGKRAKLRVESRGSIS 188
           ED+E  AA FE+WK KT++L+VPLR+VALR SVPP WIK+F+Q+QG+R + RV+  GS+ 
Sbjct: 3   EDKELNAAEFENWKLKTFALSVPLRIVALRGSVPPSWIKDFIQSQGRRLRFRVKYLGSLE 62

Query: 187 DIFDELSMAFSKRDAAPKSAIAADIVSLGDTWLSFAINKGLIEPIQNIEEQEWFAGLSDK 8
           +IF ++S +F+KR+  P S +A+DIVS+GD+WLSFAI   +IEP++ +EEQ+WF GLSDK
Sbjct: 63  NIFSDISASFNKRNIGPMSTVASDIVSVGDSWLSFAIKNAIIEPVRGVEEQDWFKGLSDK 122

Query: 7   WK 2
           WK
Sbjct: 123 WK 124


>ref|NP_001146059.1| uncharacterized protein LOC100279590 [Zea mays]
           gi|219885513|gb|ACL53131.1| unknown [Zea mays]
           gi|413919418|gb|AFW59350.1| putative putrescine-binding
           domain family protein [Zea mays]
          Length = 530

 Score =  159 bits (403), Expect = 2e-37
 Identities = 73/121 (60%), Positives = 92/121 (76%)
 Frame = -1

Query: 364 EDEETRAAFESWKSKTYSLTVPLRVVALRSSVPPLWIKNFMQAQGKRAKLRVESRGSISD 185
           ED+E  AA + WK+KTY+L+VPLRVVALR S PP WIK+F++AQGKR K   E R ++  
Sbjct: 116 EDQEWEAALQKWKTKTYALSVPLRVVALRGSFPPSWIKDFVEAQGKRLKFSPELRANLDG 175

Query: 184 IFDELSMAFSKRDAAPKSAIAADIVSLGDTWLSFAINKGLIEPIQNIEEQEWFAGLSDKW 5
           IF E+S    K    PKSA+AAD+VSLGD+WL +AI KGL+EPI+N EEQ+WF  LSD+W
Sbjct: 176 IFSEMSQCMDKGQVQPKSAMAADVVSLGDSWLGYAIRKGLLEPIKNAEEQDWFHSLSDRW 235

Query: 4   K 2
           K
Sbjct: 236 K 236


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