BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00009844
         (1007 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]             217   3e-54
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]                213   5e-53
gb|AAD20307.1| copia-type pol polyprotein [Zea mays]                  212   1e-52
gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]         209   8e-52
gb|AAC49502.1| Pol [Zea mays]                                         209   8e-52

>gb|AAL75488.1|AF466202_14 putative pol protein [Zea mays]
          Length = 800

 Score =  217 bits (553), Expect = 3e-54
 Identities = 135/344 (39%), Positives = 185/344 (53%), Gaps = 9/344 (2%)
 Frame = -1

Query: 1007 KCFVLKTHPEQLTKFELKADEGIFVGYPLSTKAFRVYNLRTKVIMESIHVSFDDKKITGL 828
            KCF+L     + +KF  K  EG  +GY  +T+A+RV+N  T ++  S  V FD+   T  
Sbjct: 134  KCFILVKRGRK-SKFAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDE---TNG 189

Query: 827  KDVDDHDLLFFENED---------SISDDQNSDDMDPTNSDEADCEPLLVNTEGVSNHEQ 675
              V+  DL    NE+         SI D    +  +P N+ +     +  +    +  E 
Sbjct: 190  SQVEQVDLDEIGNEEAPCIALRNMSIGDVCPKESEEPPNAQDQPSSSMQASPPTQNEDEA 249

Query: 674  RDEPVEGEQEESIHDDTSNSDXXXXXXXXXXXXXXXXXXXNTGGASXXXXXXXXXXXNMD 495
            +++  + +++E   DD++N                       GG +             +
Sbjct: 250  QNDEEQNQEDEPPQDDSNNQ----------------------GGDAND----------QE 277

Query: 494  QGGGSHVDRSHLPTARKWTRSHTPDLIIGDPDATVKTRRGTTNECLFNAFLSKTEPKKVE 315
            +         H    +   R H  D I+GD    V TR    + C   +F+S  EP +VE
Sbjct: 278  KEDEEEPRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVE 337

Query: 314  EALQDADWITAMQEELNEFERNEVWTLVPRPKNRSVVGTKWVFRNKTDSEGVVTRNKARL 135
            EALQD+DW+ AMQEELN F RNEVW LVPRP N++VVGTKWVFRNK D  GVVTRNKARL
Sbjct: 338  EALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARL 396

Query: 134  VAKGYSQQEGIDYDETFAPVARLEAIRIFLAYASHKKFKVFQMD 3
            VAKGYSQ EG+D+ ET+APVARLE+IRI LAYA++  FK++QMD
Sbjct: 397  VAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMD 440


>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
          Length = 1892

 Score =  213 bits (543), Expect = 5e-53
 Identities = 133/344 (38%), Positives = 183/344 (53%), Gaps = 9/344 (2%)
 Frame = -1

Query: 1007 KCFVLKTHPEQLTKFELKADEGIFVGYPLSTKAFRVYNLRTKVIMESIHVSFDDKKITGL 828
            KCF+L     + +KF  K  EG  +GY  +T+A+RV+N  T ++  S  V FD+   + +
Sbjct: 1184 KCFILIKRGRK-SKFAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDETNGSQV 1242

Query: 827  KDVDDHDLLFFENEDSISDDQNSDDMDPTNSDEADCEPLLVNTEGVSNHEQRDEPVEGEQ 648
            + VD  ++   +       + +  D+ P  S+E        +T+       +  P    +
Sbjct: 1243 EQVDLDEIGEEQAPCIALRNMSIGDVCPKESEEPP------STQDQPPSSMQASPPTQNE 1296

Query: 647  EESIHDDTSNSDXXXXXXXXXXXXXXXXXXXNTGGASXXXXXXXXXXXNMDQGGGSHVDR 468
            +E+ +D+  N +                                      DQGG ++   
Sbjct: 1297 DEAQNDEEQNQEVKPPQDKSN-----------------------------DQGGDTNDQE 1327

Query: 467  S---------HLPTARKWTRSHTPDLIIGDPDATVKTRRGTTNECLFNAFLSKTEPKKVE 315
                      H    +   R H  D I+GD    V TR    + C   +F+S  EP +VE
Sbjct: 1328 KEDEEEPRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVE 1387

Query: 314  EALQDADWITAMQEELNEFERNEVWTLVPRPKNRSVVGTKWVFRNKTDSEGVVTRNKARL 135
            EALQD+DW+ AMQEELN F RNEVW LVPRP N++VVGTKWVFRNK D  GVVTRNKARL
Sbjct: 1388 EALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARL 1446

Query: 134  VAKGYSQQEGIDYDETFAPVARLEAIRIFLAYASHKKFKVFQMD 3
            VAKGYSQ EG+D+DET+APVARLE+IRI LAYA++  FK++QMD
Sbjct: 1447 VAKGYSQVEGLDFDETYAPVARLESIRILLAYATYHGFKLYQMD 1490


>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
          Length = 1063

 Score =  212 bits (539), Expect = 1e-52
 Identities = 132/344 (38%), Positives = 183/344 (53%), Gaps = 9/344 (2%)
 Frame = -1

Query: 1007 KCFVLKTHPEQLTKFELKADEGIFVGYPLSTKAFRVYNLRTKVIMESIHVSFDDKKITGL 828
            KCF+L     + +KF  K  EG  +GY  +T+A+RV+N  T ++  S  V FD+   + +
Sbjct: 355  KCFILIKRGRK-SKFAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDETNGSQV 413

Query: 827  KDVDDHDLLFFENEDSISDDQNSDDMDPTNSDEADCEPLLVNTEGVSNHEQRDEPVEGEQ 648
            + VD  ++   +       + +  D+ P  S+E        +T+   +   +  P    +
Sbjct: 414  EQVDLDEIGEEQAPCIALRNMSIGDVCPKESEEPP------STQDQPSSSMQASPPTQNE 467

Query: 647  EESIHDDTSNSDXXXXXXXXXXXXXXXXXXXNTGGASXXXXXXXXXXXNMDQGGGSHVDR 468
            +E+ +D+  N +                                      DQGG ++   
Sbjct: 468  DEAQNDEEQNQEDEPPQDDSN-----------------------------DQGGDTNDQE 498

Query: 467  S---------HLPTARKWTRSHTPDLIIGDPDATVKTRRGTTNECLFNAFLSKTEPKKVE 315
                      H    +   R H  D I+GD    V TR    + C   +F+S  EP +VE
Sbjct: 499  KEDEEEPRPPHPRVHQAIQRDHPVDTILGDIHKGVTTRSRVAHFCEHYSFVSSIEPHRVE 558

Query: 314  EALQDADWITAMQEELNEFERNEVWTLVPRPKNRSVVGTKWVFRNKTDSEGVVTRNKARL 135
            EALQD+DW+ AMQEELN F RNEVW LVPRP N++VVGTKWVFRNK D  GVVTRNKARL
Sbjct: 559  EALQDSDWVVAMQEELNNFTRNEVWHLVPRP-NQNVVGTKWVFRNKQDEHGVVTRNKARL 617

Query: 134  VAKGYSQQEGIDYDETFAPVARLEAIRIFLAYASHKKFKVFQMD 3
            VAKGYSQ EG+D+ ET+APVARLE+IRI LAYA++  FK++QMD
Sbjct: 618  VAKGYSQVEGLDFGETYAPVARLESIRILLAYATYHGFKLYQMD 661


>gb|AEJ07944.1| Opie1 putative pol protein [Zea diploperennis]
          Length = 1065

 Score =  209 bits (532), Expect = 8e-52
 Identities = 138/344 (40%), Positives = 179/344 (52%), Gaps = 9/344 (2%)
 Frame = -1

Query: 1007 KCFVLKTHPEQLTKFELKADEGIFVGYPLSTKAFRVYNLRTKVIMESIHVSFDDKKITGL 828
            KC++L       +KF  KA EG  +GY  +TKA+RV+N                 K +GL
Sbjct: 374  KCYILVKKGRN-SKFAPKAVEGFLLGYDSNTKAYRVFN-----------------KSSGL 415

Query: 827  KDVDDHDLLFFENEDSISDDQ-NSDDMDPTNSDEADCEPLLVNTEGVSNHEQRDEPVEGE 651
             +V   D++F E   S+ +   + DD+D  +   A    + +         ++D+P    
Sbjct: 416  VEVSS-DIVFDETNGSLREQVVDLDDVDEEDVPTAAMRNMAIGDVRPQEQLEQDQP---S 471

Query: 650  QEESIHDDTSNSDXXXXXXXXXXXXXXXXXXXNTGGASXXXXXXXXXXXNMDQGGGS--H 477
                +H  T + +                                      DQGG    H
Sbjct: 472  SSTMVHPPTQDDEQVHQEEAC------------------------------DQGGAQDDH 501

Query: 476  VDRSHL----PTARKWT--RSHTPDLIIGDPDATVKTRRGTTNECLFNAFLSKTEPKKVE 315
            V         PT  + T  R H  D I+GD    V TR    N C   +F+S  EP +VE
Sbjct: 502  VMEEEAQPAPPTQVRATIQRDHPVDQILGDISKGVTTRSRLANFCEHYSFVSSIEPFRVE 561

Query: 314  EALQDADWITAMQEELNEFERNEVWTLVPRPKNRSVVGTKWVFRNKTDSEGVVTRNKARL 135
            EAL D DW+ AMQEELN F+RNEVWTLVPRPK ++VVGTKWVFRNK D  GVVTRNKARL
Sbjct: 562  EALLDPDWVLAMQEELNNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRNKARL 620

Query: 134  VAKGYSQQEGIDYDETFAPVARLEAIRIFLAYASHKKFKVFQMD 3
            VAKGY+Q  G+D++ETFAPVARLE+IRI LAYA+H  F++FQMD
Sbjct: 621  VAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLFQMD 664


>gb|AAC49502.1| Pol [Zea mays]
          Length = 1068

 Score =  209 bits (532), Expect = 8e-52
 Identities = 134/343 (39%), Positives = 175/343 (51%), Gaps = 8/343 (2%)
 Frame = -1

Query: 1007 KCFVLKTHPEQLTKFELKADEGIFVGYPLSTKAFRVYNLRTKVIMESIHVSFDDKKITGL 828
            KC++L       +KF  KA EG  +GY  +TKA+RV+N  + ++  S  V FD+   +  
Sbjct: 377  KCYILVKKGRN-SKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSGDVVFDETNGSPR 435

Query: 827  KDVDDHDLLFFENEDSISDDQNSDDMDPTNSDEADCEPLLVNTEGVSNHEQRDEPVEGEQ 648
            + V D                  DD+D  +   A    + +        ++R++P     
Sbjct: 436  EQVVD-----------------CDDVDEEDIPTAAIRTMAIGEVRPQEQDEREQP---SP 475

Query: 647  EESIHDDTSNSDXXXXXXXXXXXXXXXXXXXNTGGASXXXXXXXXXXXNMDQGGGS--HV 474
               +H  T + +                                      DQGG    HV
Sbjct: 476  STMVHPPTQDDEQVHQQEVC------------------------------DQGGAQDDHV 505

Query: 473  DRSHLPTARKWT------RSHTPDLIIGDPDATVKTRRGTTNECLFNAFLSKTEPKKVEE 312
                   A          R H  D I+GD    V TR    N C  N+F+S  EP +VEE
Sbjct: 506  LEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTTRSRLVNFCEHNSFVSSIEPFRVEE 565

Query: 311  ALQDADWITAMQEELNEFERNEVWTLVPRPKNRSVVGTKWVFRNKTDSEGVVTRNKARLV 132
            AL D DW+ AMQEELN F+RNEVWTLVPRPK ++VVGTKWVFRNK D  GVVTRNKARLV
Sbjct: 566  ALLDPDWVLAMQEELNNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDERGVVTRNKARLV 624

Query: 131  AKGYSQQEGIDYDETFAPVARLEAIRIFLAYASHKKFKVFQMD 3
            AKGY+Q  G+D++ETFAPVARLE+IRI LAYA+H  F+++QMD
Sbjct: 625  AKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMD 667