BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00009485
         (523 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACF06506.1| RNA polymerase [Elaeis guineensis]                     234   7e-60
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   228   4e-58
gb|ABK26380.1| unknown [Picea sitchensis]                             222   3e-56
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   219   1e-55
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   219   1e-55

>gb|ACF06506.1| RNA polymerase [Elaeis guineensis]
          Length = 145

 Score =  234 bits (596), Expect = 7e-60
 Identities = 114/144 (79%), Positives = 127/144 (88%)
 Frame = -2

Query: 489 MVETLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNSEIYPLHEGDKFMMVL 310
           MVE LF+DIF +  +DPDGKKFDKV+RIEA+SEQFDMYMQLDVN+EIYPLH GDKF MVL
Sbjct: 1   MVELLFEDIFTLTRIDPDGKKFDKVSRIEARSEQFDMYMQLDVNTEIYPLHVGDKFTMVL 60

Query: 309 ASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEEGSGANVKADIYVSFGGLLM 130
           A TL+LDGTPD+GY+  G RKSLADKFEYVM+GKLY+ISEE SG NVK +IY SFGGLLM
Sbjct: 61  APTLSLDGTPDSGYYMQGQRKSLADKFEYVMHGKLYKISEESSGPNVKVEIYASFGGLLM 120

Query: 129 MLKGDPSIAAKFELDQRLFILMRK 58
           MLKGDPS A  FELDQRLF+LMRK
Sbjct: 121 MLKGDPSNATNFELDQRLFLLMRK 144


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  228 bits (581), Expect = 4e-58
 Identities = 110/144 (76%), Positives = 127/144 (88%)
 Frame = -2

Query: 489 MVETLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNSEIYPLHEGDKFMMVL 310
           M  TLF DIF+V+ +DPDGKKFDKV+RIEA+SEQ DMYMQLDVN+EIYP+H G+KF M L
Sbjct: 1   MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60

Query: 309 ASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEEGSGANVKADIYVSFGGLLM 130
           ASTL+LDGTPDTGY+T  GRKSLADKFEYVM+GKLY+ISEEGSG NVK  IYVSFGGLLM
Sbjct: 61  ASTLDLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLM 120

Query: 129 MLKGDPSIAAKFELDQRLFILMRK 58
           ML GDP+  AK +LDQR+F+L+RK
Sbjct: 121 MLSGDPANTAKLDLDQRVFLLIRK 144


>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  222 bits (565), Expect = 3e-56
 Identities = 108/144 (75%), Positives = 122/144 (84%)
 Frame = -2

Query: 489 MVETLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNSEIYPLHEGDKFMMVL 310
           MVE LF+DIF V  +DPDGKKFDKV+RIEA+SEQFDMYM LDVN ++YP+  G+KF + L
Sbjct: 1   MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60

Query: 309 ASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEEGSGANVKADIYVSFGGLLM 130
           A TLNLDGTPD GYF  GGRKSLADK+EYVM GKLY +SEEGSGANVK +I  SFGGLLM
Sbjct: 61  APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLM 120

Query: 129 MLKGDPSIAAKFELDQRLFILMRK 58
           +LKGDPS A  FELDQRLF+LMRK
Sbjct: 121 LLKGDPSNAGNFELDQRLFLLMRK 144


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  219 bits (559), Expect = 1e-55
 Identities = 107/146 (73%), Positives = 126/146 (86%), Gaps = 1/146 (0%)
 Frame = -2

Query: 492 RMVETLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNSEIYPLHEGDKFMMV 313
           +MVE LF+DIF V  LDPDGKKFD+V+RIEA+SEQFDMYMQLDV +E+YP+  GD+F MV
Sbjct: 250 KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 309

Query: 312 LASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEE-GSGANVKADIYVSFGGL 136
           LA TLNLDGTPDTG++T  GRK+LADKF+YVM+GKLY+ISE+  SG   K +IY SFGGL
Sbjct: 310 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 369

Query: 135 LMMLKGDPSIAAKFELDQRLFILMRK 58
           LMMLKGDPS AA FELDQRLF+L+RK
Sbjct: 370 LMMLKGDPSSAASFELDQRLFLLIRK 395


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  219 bits (559), Expect = 1e-55
 Identities = 107/146 (73%), Positives = 126/146 (86%), Gaps = 1/146 (0%)
 Frame = -2

Query: 492 RMVETLFQDIFRVVGLDPDGKKFDKVTRIEAKSEQFDMYMQLDVNSEIYPLHEGDKFMMV 313
           +MVE LF+DIF V  LDPDGKKFD+V+RIEA+SEQFDMYMQLDV +E+YP+  GD+F MV
Sbjct: 45  KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 104

Query: 312 LASTLNLDGTPDTGYFTPGGRKSLADKFEYVMNGKLYRISEE-GSGANVKADIYVSFGGL 136
           LA TLNLDGTPDTG++T  GRK+LADKF+YVM+GKLY+ISE+  SG   K +IY SFGGL
Sbjct: 105 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 164

Query: 135 LMMLKGDPSIAAKFELDQRLFILMRK 58
           LMMLKGDPS AA FELDQRLF+L+RK
Sbjct: 165 LMMLKGDPSSAASFELDQRLFLLIRK 190