BLASTX nr result

ID: Bupleurum21_contig00009249 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00009249
         (466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB72241.1| omega-3 fatty acid desaturase [Petroselinum crispum]   173   1e-41
gb|AAB39387.1| omega-3 fatty acid desaturase [Perilla frutescens]     147   7e-34
emb|CBI22803.3| unnamed protein product [Vitis vinifera]              137   1e-30
ref|XP_002264350.1| PREDICTED: omega-3 fatty acid desaturase, ch...   137   1e-30
emb|CAN80104.1| hypothetical protein VITISV_040344 [Vitis vinifera]   137   1e-30

>gb|AAB72241.1| omega-3 fatty acid desaturase [Petroselinum crispum]
          Length = 438

 Score =  173 bits (439), Expect = 1e-41
 Identities = 86/133 (64%), Positives = 99/133 (74%)
 Frame = -1

Query: 403 MASWVISECGLRPLPRVYTKPRTGLYCFNSKNSIKNVGFLNEHMKFPIIGLKNWGLKVSV 224
           MASWVISECGLRPLPR+Y +PR+G  CFNSKN +KN+ FL+E++K  + G +NWGL+VSV
Sbjct: 1   MASWVISECGLRPLPRIYARPRSGASCFNSKNPVKNLRFLDENVKISMTGSRNWGLRVSV 60

Query: 223 PMTVXXXXXXXXXXXXXXXXXXXXXXXXFDPGAAPPFKLSDIRAAIPKHCWVKDPWRSMS 44
           PM+V                        FDPGAAPPFKLSD+RAAIPKHCWVKDP RSMS
Sbjct: 61  PMSV-----PSVSEEEERFESLVEEENEFDPGAAPPFKLSDVRAAIPKHCWVKDPVRSMS 115

Query: 43  YVLRDVLIVFGLA 5
           YVLRDVLIVFGLA
Sbjct: 116 YVLRDVLIVFGLA 128


>gb|AAB39387.1| omega-3 fatty acid desaturase [Perilla frutescens]
          Length = 438

 Score =  147 bits (372), Expect = 7e-34
 Identities = 78/138 (56%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
 Frame = -1

Query: 403 MASWVISECGLRPLPRVYTKPRTGLYCFNSKNS---IKNVGFLNEHMKFPIIGL-KNWGL 236
           MASWV+SECGLRPLPR+Y KPRTG Y  NS  S   +   GF ++   F ++G  +NWGL
Sbjct: 1   MASWVLSECGLRPLPRIYPKPRTGQYLSNSNPSKLRLSRTGFSSDS-SFSLVGRERNWGL 59

Query: 235 KVSVPMTVXXXXXXXXXXXXXXXXXXXXXXXXFDPGAAPPFKLSDIRAAIPKHCWVKDPW 56
           KVS P+                           DPGA PPFKLSDIRAAIPKHCWVKDPW
Sbjct: 60  KVSAPLRFQEVEEESEERGSVIVNGVDEF----DPGAPPPFKLSDIRAAIPKHCWVKDPW 115

Query: 55  RSMSYVLRDVLIVFGLAA 2
           RSMSYV+RDV++VFGLAA
Sbjct: 116 RSMSYVVRDVVVVFGLAA 133


>emb|CBI22803.3| unnamed protein product [Vitis vinifera]
          Length = 439

 Score =  137 bits (344), Expect = 1e-30
 Identities = 76/143 (53%), Positives = 92/143 (64%), Gaps = 9/143 (6%)
 Frame = -1

Query: 403 MASWVISECGLRPLPRVYTKPRTGLYCFNSKNSIKNVGFLNEH-----MKF--PIIGLK- 248
           MASWV+SECG+RPLP++YT+PRTG +  NSKN+   + F + +     +KF  PI   K 
Sbjct: 1   MASWVLSECGIRPLPQIYTRPRTG-HISNSKNNHSRIRFFHSNQSKTDLKFREPIGCSKE 59

Query: 247 -NWGLKVSVPMTVXXXXXXXXXXXXXXXXXXXXXXXXFDPGAAPPFKLSDIRAAIPKHCW 71
            NW LKVS P+ V                         DPGA PPFKL+DIRAAIPKHCW
Sbjct: 60  RNWALKVSAPLRVEVNGVEEQPEF--------------DPGAPPPFKLADIRAAIPKHCW 105

Query: 70  VKDPWRSMSYVLRDVLIVFGLAA 2
           VKDPWRSMSYV+RDV++V GLAA
Sbjct: 106 VKDPWRSMSYVVRDVVVVCGLAA 128


>ref|XP_002264350.1| PREDICTED: omega-3 fatty acid desaturase, chloroplastic [Vitis
           vinifera]
          Length = 452

 Score =  137 bits (344), Expect = 1e-30
 Identities = 76/143 (53%), Positives = 92/143 (64%), Gaps = 9/143 (6%)
 Frame = -1

Query: 403 MASWVISECGLRPLPRVYTKPRTGLYCFNSKNSIKNVGFLNEH-----MKF--PIIGLK- 248
           MASWV+SECG+RPLP++YT+PRTG +  NSKN+   + F + +     +KF  PI   K 
Sbjct: 1   MASWVLSECGIRPLPQIYTRPRTG-HISNSKNNHSRIRFFHSNQSKTDLKFREPIGCSKE 59

Query: 247 -NWGLKVSVPMTVXXXXXXXXXXXXXXXXXXXXXXXXFDPGAAPPFKLSDIRAAIPKHCW 71
            NW LKVS P+ V                         DPGA PPFKL+DIRAAIPKHCW
Sbjct: 60  RNWALKVSAPLRVEYGEEEERGEIINRVNGVEEQPEF-DPGAPPPFKLADIRAAIPKHCW 118

Query: 70  VKDPWRSMSYVLRDVLIVFGLAA 2
           VKDPWRSMSYV+RDV++V GLAA
Sbjct: 119 VKDPWRSMSYVVRDVVVVCGLAA 141


>emb|CAN80104.1| hypothetical protein VITISV_040344 [Vitis vinifera]
          Length = 452

 Score =  137 bits (344), Expect = 1e-30
 Identities = 77/143 (53%), Positives = 93/143 (65%), Gaps = 9/143 (6%)
 Frame = -1

Query: 403 MASWVISECGLRPLPRVYTKPRTGLYCFNSKNSIKNVGFLNEH-----MKF--PIIGLK- 248
           MASWV+SECG+RPLP++YT+PRTG +  NSKN+   + F + +     +KF  PI   K 
Sbjct: 1   MASWVLSECGIRPLPQIYTRPRTG-HISNSKNNHSRIRFFHSNQSKTDLKFREPIGCSKE 59

Query: 247 -NWGLKVSVPMTVXXXXXXXXXXXXXXXXXXXXXXXXFDPGAAPPFKLSDIRAAIPKHCW 71
            NW LKVS P+ V                         DPGA PPFKL+DIRAAIPKHCW
Sbjct: 60  RNWALKVSAPLRVXYGEEEERGEIINRVNGVEEQPEF-DPGAPPPFKLADIRAAIPKHCW 118

Query: 70  VKDPWRSMSYVLRDVLIVFGLAA 2
           VKDPWRSMSYV+RDV++V GLAA
Sbjct: 119 VKDPWRSMSYVVRDVVVVCGLAA 141


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