BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00009148
         (910 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28010.3| unnamed protein product [Vitis vinifera]              334   2e-89
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   334   2e-89
ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme...   295   1e-77
ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polyme...   276   5e-72
ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arab...   270   3e-70

>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  334 bits (856), Expect = 2e-89
 Identities = 160/299 (53%), Positives = 212/299 (70%), Gaps = 1/299 (0%)
 Frame = +3

Query: 3    YPGLHFGDIHILNAVYLKEMEDFVGNAKYGIFFSTKGPRSVASEIANGDFDGDMYWVSRN 182
            +PGLHFGDIH+LNA Y++ +E+FVGNAKY IFF  KGPRS+A E+AN DFDGDMYWVSRN
Sbjct: 585  HPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRN 644

Query: 183  NQLLHYFKESTPWMRMHSSPSVNHRKPSDFSCDXXXXXXXXXXXNTKNQNIS-MGVAADS 359
             QLL YF+ S PWMR  S+  V  ++P+DFS D            T+ Q  S +G+AAD+
Sbjct: 645  QQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADN 704

Query: 360  WLAFTDRFLTLGDDNSDAKNHLKTKMLNLIDIYYDALDAPKTGKKVRIPNQLKADKYPHY 539
            WL F DR LTL DD SD K  LK KML L DIYYDALDAPK+G KV +  +LKA+K+PH+
Sbjct: 705  WLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHF 764

Query: 540  MEKGNEYESSSVLGKICNTVDCYKTARMSTYEIWKLPLFEHIEIPDDKLKFWKEKYDTYR 719
            M + + Y S+S+LG+I + V+ ++    ST EIW+LPLF    +P   L+ WK++YD YR
Sbjct: 765  MGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYR 824

Query: 720  QDMTDALSSKDKSETNAADDVINRYKRIMYGADDFEGTSRNKDDIYVDALALYHVCYDF 896
             +M  AL    +++   A +VIN+YK+I+YGA +FE + RN +DI+ +ALA+YHV Y+F
Sbjct: 825  SEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEF 883


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  334 bits (856), Expect = 2e-89
 Identities = 160/299 (53%), Positives = 212/299 (70%), Gaps = 1/299 (0%)
 Frame = +3

Query: 3    YPGLHFGDIHILNAVYLKEMEDFVGNAKYGIFFSTKGPRSVASEIANGDFDGDMYWVSRN 182
            +PGLHFGDIH+LNA Y++ +E+FVGNAKY IFF  KGPRS+A E+AN DFDGDMYWVSRN
Sbjct: 599  HPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDGDMYWVSRN 658

Query: 183  NQLLHYFKESTPWMRMHSSPSVNHRKPSDFSCDXXXXXXXXXXXNTKNQNIS-MGVAADS 359
             QLL YF+ S PWMR  S+  V  ++P+DFS D            T+ Q  S +G+AAD+
Sbjct: 659  QQLLQYFRASEPWMRKRSTRHVPSKRPTDFSPDELEHELFQLFLTTRFQTSSAIGMAADN 718

Query: 360  WLAFTDRFLTLGDDNSDAKNHLKTKMLNLIDIYYDALDAPKTGKKVRIPNQLKADKYPHY 539
            WL F DR LTL DD SD K  LK KML L DIYYDALDAPK+G KV +  +LKA+K+PH+
Sbjct: 719  WLVFMDRLLTLRDDCSDEKECLKRKMLELTDIYYDALDAPKSGMKVNVSKELKAEKFPHF 778

Query: 540  MEKGNEYESSSVLGKICNTVDCYKTARMSTYEIWKLPLFEHIEIPDDKLKFWKEKYDTYR 719
            M + + Y S+S+LG+I + V+ ++    ST EIW+LPLF    +P   L+ WK++YD YR
Sbjct: 779  MGRESSYHSTSILGQIYDAVESFQPENQSTKEIWRLPLFNIDAVPQACLRSWKDRYDQYR 838

Query: 720  QDMTDALSSKDKSETNAADDVINRYKRIMYGADDFEGTSRNKDDIYVDALALYHVCYDF 896
             +M  AL    +++   A +VIN+YK+I+YGA +FE + RN +DI+ +ALA+YHV Y+F
Sbjct: 839  SEMAAALQHGGETKDEYAAEVINKYKQILYGAAEFEESPRNLEDIFDEALAIYHVTYEF 897


>ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
            sativus]
          Length = 1056

 Score =  295 bits (755), Expect = 1e-77
 Identities = 148/304 (48%), Positives = 206/304 (67%), Gaps = 3/304 (0%)
 Frame = +3

Query: 6    PGLHFGDIHILNAVYLKEMEDFVGNAKYGIFFSTKGPRSVASEIANGDFDGDMYWVSRNN 185
            PGLHFGDIH+L A Y++++   VGNAKY IFFS+KGPRSVA EIA GDFDGDMYWVSRN+
Sbjct: 714  PGLHFGDIHVLTAKYVEKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNS 773

Query: 186  QLLHYFKESTPWMRMHSSPSVNHRKPSDFSCDXXXXXXXXXXXNTKNQ-NISMGVAADSW 362
            QLL YF+   PW    S+  V ++KP +FS D           +T+ Q + +  VAAD+W
Sbjct: 774  QLLEYFRPCEPWRPSPSTEVVTNKKPKEFSADELENELFKLFLSTRFQPSYAKSVAADNW 833

Query: 363  LAFTDRFLTLGDDNSDAKNHLKTKMLNLIDIYYDALDAPKT-GKKVRIPNQLKADKYPHY 539
            LA  D+FL LG++  + +N ++ K+L LI+IYYDALDAPK  GKK+ +P  LKA   PH+
Sbjct: 834  LALMDQFLMLGEERKEERNCIRAKILQLINIYYDALDAPKKGGKKIEVPKHLKAGTLPHF 893

Query: 540  MEKG-NEYESSSVLGKICNTVDCYKTARMSTYEIWKLPLFEHIEIPDDKLKFWKEKYDTY 716
            ME+G N Y S+S+LG+I +T + Y+   +   E+ KLP FE  E+P+     WK  Y+ Y
Sbjct: 894  MERGKNSYVSTSILGQIFDTANMYQ-EEVPNIEVQKLPCFEE-ELPEYIFMKWKFLYELY 951

Query: 717  RQDMTDALSSKDKSETNAADDVINRYKRIMYGADDFEGTSRNKDDIYVDALALYHVCYDF 896
            R+DM DA+     ++  AA+  I +YK I+YGA++ EG+ R+ +++Y +ALA+Y V YD 
Sbjct: 952  RKDMVDAMQLDPDAKNIAAEATIKKYKEILYGAEELEGSPRSNEEVYQEALAIYQVTYDH 1011

Query: 897  AKSK 908
            A S+
Sbjct: 1012 AMSR 1015


>ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max]
          Length = 953

 Score =  276 bits (706), Expect = 5e-72
 Identities = 145/305 (47%), Positives = 204/305 (66%), Gaps = 4/305 (1%)
 Frame = +3

Query: 6    PGLHFGDIHILNAVYLKEMEDFVGNAKYGIFFSTKGPRSVASEIANGDFDGDMYWVSRNN 185
            PGLHFGDIH ++A Y+KE+E +VG++KYGIFF   G RSVA EIA GDFDGD YWVS + 
Sbjct: 608  PGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYWVSNHP 667

Query: 186  QLLHYFKESTPWMRMHSSPSVNHRKPSDFSCDXXXXXXXXXXXNTKNQ-NISMGVAADSW 362
            QLL YF++  PW+        + +KPS+FS +            T+ Q + +MG++ +SW
Sbjct: 668  QLLQYFRKGDPWIENSVPLDSSVKKPSEFSPEELEEELFRLFLKTRFQPSYAMGMSENSW 727

Query: 363  LAFTDRFLTLGD-DNSDAKNHLKTKMLNLIDIYYDALDAPKTGKKVRIPNQLKADKYPHY 539
            +A  DR LTL +  N + K  +K  ML LIDIYY+ALDAPK+G+KV++PN L A+ +PHY
Sbjct: 728  MALMDRLLTLNNCTNENEKERVKENMLKLIDIYYEALDAPKSGRKVQVPNDLIAELFPHY 787

Query: 540  MEKGNEYESSSVLGKICNTVDCYKTARMSTYEIWKLPLFEHIEIPDDKLKFWKEKYDTYR 719
            MEK   + S+S+LG I + V+ +    M   EIWKLP F+ +E+P   L+ WK KY+ YR
Sbjct: 788  MEKDKSFTSTSILGLIYDEVEIWLENDM-VGEIWKLPCFD-VEVPPSCLEKWKTKYEEYR 845

Query: 720  QDMTDALSSKDKSETN-AADDVINRYKRIMYGAD-DFEGTSRNKDDIYVDALALYHVCYD 893
            +DMTDAL+ KDKS+++  A +V  +YK   YG   + EG  ++  DI+ +ALA+Y+V Y+
Sbjct: 846  KDMTDALNLKDKSKSHEEAAEVNRKYKEEFYGPTLEMEGCLKSIGDIFNEALAVYNVSYE 905

Query: 894  FAKSK 908
            +A  K
Sbjct: 906  YAMLK 910


>ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
            gi|322967572|sp|O82188.2|RDR5_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 5;
            Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
            5 gi|330251850|gb|AEC06944.1| RNA-dependent RNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 977

 Score =  270 bits (691), Expect = 3e-70
 Identities = 144/301 (47%), Positives = 197/301 (65%), Gaps = 3/301 (0%)
 Frame = +3

Query: 6    PGLHFGDIHILNAVYLKEMEDFVGNAKYGIFFSTKGPRSVASEIANGDFDGDMYWVSRNN 185
            PGLHFGDIHIL A Y+K +E++VGN+K+ +FF  KGPRS+  EIA GDFDGDMY++SRN 
Sbjct: 635  PGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNP 694

Query: 186  QLLHYFKESTPWMRMHS-SPSVNHRKPSDFSCDXXXXXXXXXXXNTK-NQNISMGVAADS 359
            +LL  FK S PW+ +   S S + R PS  S +               + +  +G+AADS
Sbjct: 695  ELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMFLTAGFHASNVIGIAADS 754

Query: 360  WLAFTDRFLTLGDDNSDAKNHLKTKMLNLIDIYYDALDAPKTGKKVRIPNQLKADKYPHY 539
            WL   DRFL LGDD ++ K  +K KML LIDIYYDALDAPK G KV +PN+LK D +PHY
Sbjct: 755  WLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKGDKVYLPNKLKPDIFPHY 814

Query: 540  MEKGNEYESSSVLGKICNTVDCYKTARMS-TYEIWKLPLFEHIEIPDDKLKFWKEKYDTY 716
            ME+  +++S+S+LG I + V    T   S + EI KLP FE   + +  ++  +  YD Y
Sbjct: 815  MERDKKFQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFEDEPVSEFHMQKCRLWYDNY 874

Query: 717  RQDMTDALSSKDKSETNAADDVINRYKRIMYGADDFEGTSRNKDDIYVDALALYHVCYDF 896
            R +MT A+ + DK E  +A++VI RYK+  YGA  FE + ++ +++Y  ALALY + YD+
Sbjct: 875  RTEMTQAMKT-DKDE--SANEVIQRYKQEFYGAAGFEDSKKSLEELYPQALALYKIVYDY 931

Query: 897  A 899
            A
Sbjct: 932  A 932