BLASTX nr result
ID: Bupleurum21_contig00008838
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00008838
(1976 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283766.1| PREDICTED: KH domain-containing protein At4g... 677 0.0
ref|XP_003554535.1| PREDICTED: KH domain-containing protein At4g... 638 e-180
ref|XP_003543809.1| PREDICTED: KH domain-containing protein At4g... 637 e-180
ref|XP_002323868.1| predicted protein [Populus trichocarpa] gi|2... 628 e-177
ref|XP_003618523.1| Poly(rC)-binding protein [Medicago truncatul... 617 e-174
>ref|XP_002283766.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|296082939|emb|CBI22240.3| unnamed protein product
[Vitis vinifera]
Length = 548
Score = 677 bits (1746), Expect = 0.0
Identities = 343/497 (69%), Positives = 402/497 (80%), Gaps = 2/497 (0%)
Frame = +1
Query: 7 SYSDYSDDGRNKRRNSGVERESFSIGSEDTVYRYLCPXXXXXXXXXXXXXXVKQIRADSR 186
S SDY D+G NKRRN G +R+ F+I EDTVYRYLCP VKQ+R D++
Sbjct: 14 SQSDYGDNGGNKRRNPGDDRDPFTIEPEDTVYRYLCPGRKIGSIIGRGGEIVKQLRVDTK 73
Query: 187 SKIRIGETVPGCDERVVTIYSSSDETNDFDGTETRVCASQDALFMVHDRIVADDM-SDDS 363
SKIRIGETVPGC+ERVVTIYSSSDETN FD ++T V +QDALF VHDR+V++++ +DS
Sbjct: 74 SKIRIGETVPGCEERVVTIYSSSDETNAFDDSDTFVSPAQDALFRVHDRVVSEEVHGEDS 133
Query: 364 EEEPQVTVRLLVPSDQIGCVIGKGGQIVQNIRSDTGAQIRIMKDDHLPPCALTSDELVQI 543
EE QVTVRLLVPSDQIGCVIGKGGQI+Q+IRS++GAQ+RI+KDDHLP CAL+SDELVQI
Sbjct: 134 EEASQVTVRLLVPSDQIGCVIGKGGQIIQSIRSESGAQVRILKDDHLPSCALSSDELVQI 193
Query: 544 SGKAAVVRKALFQIAARLHDNPSRSQHMLISAKPNAYESGGSVMGPTGGAPIMGLAPVMG 723
SG+ ++VRKAL+QIA+RLHDNPSRSQH+L SA P Y SGGS+MGPT GAPIMGLAP++G
Sbjct: 194 SGEPSLVRKALYQIASRLHDNPSRSQHLLASAVPTGYSSGGSLMGPTSGAPIMGLAPLVG 253
Query: 724 SYSGYKGESGRWSGSLYAAPRDELSPKEFSLYLVCPTANXXXXXXXXXXXXNQIRQNSGA 903
+Y GY+G+SG WS SLY+APRDE S KEFSL LVCP N NQIRQ SGA
Sbjct: 254 TYGGYRGDSGDWSRSLYSAPRDEASSKEFSLRLVCPIGNIGGVIGKGGVIINQIRQESGA 313
Query: 904 TIKVDS-STADDNDCIISVSAKEFFENTFSPTIEAALRLQPSCSEKIERDSGLISFTTRL 1080
IKVDS S A+ +DC+I++SAKEFFE+TFSPTIEAA+RLQP CSEK+ERDSG++SFTTRL
Sbjct: 314 AIKVDSTSAAEADDCLIAISAKEFFEDTFSPTIEAAVRLQPRCSEKVERDSGIVSFTTRL 373
Query: 1081 LVPTSRXXXXXXXXXXXXTEMRNTTKANIRILSKENVPKVASSDDEMVQISGDLDVAKDA 1260
LVPTSR TEMR TKANIRILSKEN+PKVAS DDEMVQI+GDLDVAKDA
Sbjct: 374 LVPTSRIGCLIGKGGAIITEMRKLTKANIRILSKENLPKVASEDDEMVQIAGDLDVAKDA 433
Query: 1261 LLQVTSRLRANLFEREGAVSALVPVLPYLPMSVDSSDSLKYESRDRDSRRYGREHSYSGG 1440
L+QVT+RLRANLF+REGAVSA VPVLPYLPM+ D SD LKY+ RD++R+GR SYSGG
Sbjct: 434 LIQVTTRLRANLFDREGAVSAFVPVLPYLPMAADGSDGLKYDG--RDNKRHGRGPSYSGG 491
Query: 1441 YGGSNDLPTSDLYGTYG 1491
YGGS+DL +D YG YG
Sbjct: 492 YGGSSDLAAADAYGGYG 508
Score = 79.7 bits (195), Expect = 3e-12
Identities = 74/281 (26%), Positives = 111/281 (39%), Gaps = 27/281 (9%)
Frame = +1
Query: 7 SYSDY-SDDGRNKRRNSGVERESFSIGSEDTVYRYLCPXXXXXXXXXXXXXXVKQIRADS 183
+Y Y D G R R+ S S++ R +CP + QIR +S
Sbjct: 254 TYGGYRGDSGDWSRSLYSAPRDEAS--SKEFSLRLVCPIGNIGGVIGKGGVIINQIRQES 311
Query: 184 RSKIRIGETVPG-CDERVVTIYSSSDETNDFDGTETRVCASQDALFMVHDRIVADDMSDD 360
+ I++ T D+ ++ I + + F T Q S+
Sbjct: 312 GAAIKVDSTSAAEADDCLIAISAKEFFEDTFSPTIEAAVRLQPRC------------SEK 359
Query: 361 SEEEPQV---TVRLLVPSDQIGCVIGKGGQIVQNIRSDTGAQIRIMKDDHLPPCALTSDE 531
E + + T RLLVP+ +IGC+IGKGG I+ +R T A IRI+ ++LP A DE
Sbjct: 360 VERDSGIVSFTTRLLVPTSRIGCLIGKGGAIITEMRKLTKANIRILSKENLPKVASEDDE 419
Query: 532 LVQISGKAAVVRKALFQIAARLHDNPSRSQHMLISAKP---------------------- 645
+VQI+G V + AL Q+ RL N + + + P
Sbjct: 420 MVQIAGDLDVAKDALIQVTTRLRANLFDREGAVSAFVPVLPYLPMAADGSDGLKYDGRDN 479
Query: 646 NAYESGGSVMGPTGGAPIMGLAPVMGSYSGYKGESGRWSGS 768
+ G S G GG+ + A G Y G SG G+
Sbjct: 480 KRHGRGPSYSGGYGGSSDLAAADAYGGYGSQIGGSGSGYGA 520
>ref|XP_003554535.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]
Length = 548
Score = 638 bits (1646), Expect = e-180
Identities = 323/499 (64%), Positives = 388/499 (77%), Gaps = 3/499 (0%)
Frame = +1
Query: 7 SYSDYSDDGRNKRRNSGVERESFSIGSEDTVYRYLCPXXXXXXXXXXXXXXVKQIRADSR 186
S SD+ D+G NKRRN G +RE F I EDTVYRY+CP VKQ+R +++
Sbjct: 14 SQSDH-DNGPNKRRNHGDDREQFVIDLEDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETK 72
Query: 187 SKIRIGETVPGCDERVVTIYSSSDETNDFDGTETRVCASQDALFMVHDRIVADDMSDDSE 366
+KIRIGETVPGC+ERVVTIYS SDETN +G V +QDALF VHDR+VA+D D +
Sbjct: 73 AKIRIGETVPGCEERVVTIYSPSDETNAVEGGGNYVSPAQDALFKVHDRVVAEDFHGDQD 132
Query: 367 EE--PQVTVRLLVPSDQIGCVIGKGGQIVQNIRSDTGAQIRIMKDDHLPPCALTSDELVQ 540
++ QVT +LLVPSDQIGCVIGKGG IVQNIRS+TGAQIRI+KDDHLP CAL+SDELVQ
Sbjct: 133 DDGGQQVTAKLLVPSDQIGCVIGKGGSIVQNIRSETGAQIRILKDDHLPLCALSSDELVQ 192
Query: 541 ISGKAAVVRKALFQIAARLHDNPSRSQHMLISAKPNAYESGGSVMGPTGGAPIMGLAPVM 720
I+G A+VV+KAL QIA+RLHDNPSRSQH+L SA P Y +GGS++GP GAPI+G+AP++
Sbjct: 193 ITGDASVVKKALCQIASRLHDNPSRSQHLLTSAVPGVYPAGGSLIGPGAGAPIVGIAPLV 252
Query: 721 GSYSGYKGESGRWSG-SLYAAPRDELSPKEFSLYLVCPTANXXXXXXXXXXXXNQIRQNS 897
G+Y GYKG++G W S+Y+APRDE S KEFS+ LVCPT N NQIRQ S
Sbjct: 253 GAYGGYKGDTGDWPPRSMYSAPRDEASTKEFSVRLVCPTGNIGGVIGKGGMIINQIRQES 312
Query: 898 GATIKVDSSTADDNDCIISVSAKEFFENTFSPTIEAALRLQPSCSEKIERDSGLISFTTR 1077
GATIKVDSST + ++C+I++S KEFFE TFSPTIEAA+RLQP CSEK+ERDSG+ISFTTR
Sbjct: 313 GATIKVDSSTTEGDECLIAISTKEFFEETFSPTIEAAVRLQPRCSEKVERDSGIISFTTR 372
Query: 1078 LLVPTSRXXXXXXXXXXXXTEMRNTTKANIRILSKENVPKVASSDDEMVQISGDLDVAKD 1257
LLVPTSR TEMR TKANIRI+SKEN+PK+AS DDEMVQISGDLD+AKD
Sbjct: 373 LLVPTSRIGCLIGKGGSIITEMRRLTKANIRIISKENLPKIASEDDEMVQISGDLDIAKD 432
Query: 1258 ALLQVTSRLRANLFEREGAVSALVPVLPYLPMSVDSSDSLKYESRDRDSRRYGREHSYSG 1437
AL+ V +RLRANLF+REGA+S+ +PVLPYLP+S D SD L Y+ RD +R+GR HSYS
Sbjct: 433 ALVHVLTRLRANLFDREGALSSFLPVLPYLPVSADGSDGLNYDG--RDGKRHGRGHSYSS 490
Query: 1438 GYGGSNDLPTSDLYGTYGG 1494
GYGGS+DL D+YG+YGG
Sbjct: 491 GYGGSSDLAAGDIYGSYGG 509
>ref|XP_003543809.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max]
Length = 561
Score = 637 bits (1642), Expect = e-180
Identities = 322/499 (64%), Positives = 388/499 (77%), Gaps = 3/499 (0%)
Frame = +1
Query: 7 SYSDYSDDGRNKRRNSGVERESFSIGSEDTVYRYLCPXXXXXXXXXXXXXXVKQIRADSR 186
S SD+ D+G NKRRN G +RE F I SEDTVYRY+CP VKQ+R +++
Sbjct: 14 SQSDH-DNGPNKRRNHGDDREQFVIDSEDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETK 72
Query: 187 SKIRIGETVPGCDERVVTIYSSSDETNDFDGTETRVCASQDALFMVHDRIVADDMSDDSE 366
+KIRIGETVPGC+ERVVTIY SDETN +G V +QDALF VHDR+VA+D D +
Sbjct: 73 AKIRIGETVPGCEERVVTIYGPSDETNAVEGGGNYVSPAQDALFKVHDRVVAEDFHGDQD 132
Query: 367 EE--PQVTVRLLVPSDQIGCVIGKGGQIVQNIRSDTGAQIRIMKDDHLPPCALTSDELVQ 540
++ QVT +LLVPSDQIGCVIGKGG IVQNIR +TGAQIRI+KDDHLP CAL+SDELVQ
Sbjct: 133 DDGGQQVTAKLLVPSDQIGCVIGKGGSIVQNIRGETGAQIRILKDDHLPMCALSSDELVQ 192
Query: 541 ISGKAAVVRKALFQIAARLHDNPSRSQHMLISAKPNAYESGGSVMGPTGGAPIMGLAPVM 720
I+G AAVV+KAL+QIA+RLHDNPSRSQH+L SA Y +GGS++GP GAPI+G+AP++
Sbjct: 193 ITGDAAVVKKALYQIASRLHDNPSRSQHLLTSAVSGVYPAGGSLIGPGAGAPIVGIAPLV 252
Query: 721 GSYSGYKGESGRWSG-SLYAAPRDELSPKEFSLYLVCPTANXXXXXXXXXXXXNQIRQNS 897
GSY GYKG++G W S+Y+APRDE S KEFS+ LVCPT N NQIRQ+S
Sbjct: 253 GSYGGYKGDTGDWPPRSMYSAPRDEASSKEFSVRLVCPTGNIGGVIGKGGMIINQIRQDS 312
Query: 898 GATIKVDSSTADDNDCIISVSAKEFFENTFSPTIEAALRLQPSCSEKIERDSGLISFTTR 1077
GATIKVDSST + ++C+I++S KEFFE TFSPTIEAA+RLQP CSEK+ERDSG+ISFTTR
Sbjct: 313 GATIKVDSSTIEGDECLIAISTKEFFEETFSPTIEAAVRLQPRCSEKVERDSGIISFTTR 372
Query: 1078 LLVPTSRXXXXXXXXXXXXTEMRNTTKANIRILSKENVPKVASSDDEMVQISGDLDVAKD 1257
LLVPT+R T+MR TKANIRI+SKEN+PK+A+ DDEMVQISGDLDVAKD
Sbjct: 373 LLVPTTRIGCLIGKGGSIITDMRRLTKANIRIISKENLPKIANEDDEMVQISGDLDVAKD 432
Query: 1258 ALLQVTSRLRANLFEREGAVSALVPVLPYLPMSVDSSDSLKYESRDRDSRRYGREHSYSG 1437
AL+ V +RLRANLF+REGA+SA +PVLPYLP+S D SD L Y+ RD +R+GR HSYS
Sbjct: 433 ALVHVLTRLRANLFDREGALSAFLPVLPYLPVSADGSDGLNYDG--RDGKRHGRGHSYSS 490
Query: 1438 GYGGSNDLPTSDLYGTYGG 1494
GYGGS+DL D+YG+YGG
Sbjct: 491 GYGGSSDLAAGDVYGSYGG 509
>ref|XP_002323868.1| predicted protein [Populus trichocarpa] gi|222866870|gb|EEF04001.1|
predicted protein [Populus trichocarpa]
Length = 531
Score = 628 bits (1620), Expect = e-177
Identities = 318/497 (63%), Positives = 394/497 (79%), Gaps = 2/497 (0%)
Frame = +1
Query: 7 SYSDYSDDGRNKRRNSGVERESFSIGSEDTVYRYLCPXXXXXXXXXXXXXXVKQIRADSR 186
S SDY D G NKRRNSG +RE F I S+DTVYRYLCP +KQ+R D++
Sbjct: 14 SQSDY-DIGGNKRRNSGDDRERFVIDSQDTVYRYLCPARKIGSIIGRGGEIIKQLRIDTK 72
Query: 187 SKIRIGETVPGCDERVVTIYSSSDETNDFDGTETRVCASQDALFMVHDRIVADDMS--DD 360
SKIR+GETVPGC+ERVVTIYS SDETN+++ + + +QDALF VHD+++A+D+ DD
Sbjct: 73 SKIRVGETVPGCEERVVTIYSPSDETNEYEDSGNYISPAQDALFRVHDKVIAEDLQVEDD 132
Query: 361 SEEEPQVTVRLLVPSDQIGCVIGKGGQIVQNIRSDTGAQIRIMKDDHLPPCALTSDELVQ 540
SE PQVT +LLVPSDQIGC+IGKGGQIVQNIRS+TGA IRI+KD+HLPPCAL+SDELVQ
Sbjct: 133 SEGSPQVTAKLLVPSDQIGCIIGKGGQIVQNIRSETGAVIRILKDEHLPPCALSSDELVQ 192
Query: 541 ISGKAAVVRKALFQIAARLHDNPSRSQHMLISAKPNAYESGGSVMGPTGGAPIMGLAPVM 720
ISG+AAV++KAL+QIA+RLHDNPSRSQH+L+SA PN Y S GS++GP+ API+G+AP+M
Sbjct: 193 ISGEAAVLKKALYQIASRLHDNPSRSQHLLVSAVPNVYSSVGSLVGPSAAAPIVGIAPLM 252
Query: 721 GSYSGYKGESGRWSGSLYAAPRDELSPKEFSLYLVCPTANXXXXXXXXXXXXNQIRQNSG 900
G Y G+KG++G WS SLY+APRDEL+ KEFSL +VCPTAN NQIRQ SG
Sbjct: 253 GPYGGFKGDTGDWSRSLYSAPRDELASKEFSLRVVCPTANIGAVIGKGGTIINQIRQESG 312
Query: 901 ATIKVDSSTADDNDCIISVSAKEFFENTFSPTIEAALRLQPSCSEKIERDSGLISFTTRL 1080
ATIKVDSS A+ +DC+I++SAKE +++ +SPTIEAA+RLQP CSEK+ERDSGLISFTTRL
Sbjct: 313 ATIKVDSSVAEGDDCLITISAKEIYDH-YSPTIEAAVRLQPRCSEKMERDSGLISFTTRL 371
Query: 1081 LVPTSRXXXXXXXXXXXXTEMRNTTKANIRILSKENVPKVASSDDEMVQISGDLDVAKDA 1260
LVP+SR EMR TKA IRI KEN+PKVAS DDEMVQI+GDLDVAKDA
Sbjct: 372 LVPSSRIGCLLGKGGAIIDEMRKLTKAIIRIPRKENLPKVASDDDEMVQIAGDLDVAKDA 431
Query: 1261 LLQVTSRLRANLFEREGAVSALVPVLPYLPMSVDSSDSLKYESRDRDSRRYGREHSYSGG 1440
L+Q++ RLRAN+F+REGA+SA++PVLPYLP+S + S+ L Y+S RD +R+GR SY+GG
Sbjct: 432 LIQISRRLRANVFDREGAMSAILPVLPYLPVSAEGSEGLNYDS--RDGKRHGRGSSYAGG 489
Query: 1441 YGGSNDLPTSDLYGTYG 1491
Y S+D + D YG+YG
Sbjct: 490 Y-SSSDYASGDGYGSYG 505
>ref|XP_003618523.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493538|gb|AES74741.1| Poly(rC)-binding protein
[Medicago truncatula]
Length = 569
Score = 617 bits (1591), Expect = e-174
Identities = 323/502 (64%), Positives = 380/502 (75%), Gaps = 7/502 (1%)
Frame = +1
Query: 4 RSYSDYSDDGRNKRRNSGV---ERESFSIGSEDTVYRYLCPXXXXXXXXXXXXXXVKQIR 174
RS SDY D G NKRRN G +RE F I EDTV+RYLCP VKQ+R
Sbjct: 15 RSQSDY-DGGGNKRRNGGDHDRDREQFVINKEDTVFRYLCPGRKIGSIIGRGGEIVKQLR 73
Query: 175 ADSRSKIRIGETVPGCDERVVTIYSSSDETNDFDGTETRVCASQDALFMVHDRIVADDMS 354
++++KIRIGETVPGCDERVVT+YSSSDETN D + V ++DALF +HDR+VA+D+
Sbjct: 74 VETKAKIRIGETVPGCDERVVTVYSSSDETNTVDDGDKLVSPAEDALFKIHDRVVAEDLH 133
Query: 355 DDSEEE--PQVTVRLLVPSDQIGCVIGKGGQIVQNIRSDTGAQIRIMKDDHLPPCALTSD 528
D EEE PQV +LLVPSDQIGCV+GKGGQIVQN+RS+TGAQIRI+KDDH+P CAL SD
Sbjct: 134 SDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSETGAQIRILKDDHVPACALRSD 193
Query: 529 ELVQISGKAAVVRKALFQIAARLHDNPSRSQHMLISAKPNAYESGGSVMGPTGGAPIMGL 708
ELVQISG AAVV+KAL QIA+RLH NPSR+QH+L SA P+ Y SGGS+MGPT G PI+G+
Sbjct: 194 ELVQISGDAAVVKKALHQIASRLHHNPSRTQHLLGSAVPSVYPSGGSLMGPTAGPPIVGM 253
Query: 709 APVMGSYSGYKGESGRWSG-SLYAAPRDELSP-KEFSLYLVCPTANXXXXXXXXXXXXNQ 882
AP++G Y GYK ++G W S+Y+APRDE+S KEFS+ LVCPT N NQ
Sbjct: 254 APLVGPYGGYKSDTGDWPPRSMYSAPRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQ 313
Query: 883 IRQNSGATIKVDSSTADDNDCIISVSAKEFFENTFSPTIEAALRLQPSCSEKIERDSGLI 1062
IRQ+SGATIKVDSS D DC+I++S KEFFE TFSPT+EAA+ LQP CSEK ERDSG+I
Sbjct: 314 IRQDSGATIKVDSSAKGD-DCLITISTKEFFEETFSPTVEAAVLLQPRCSEKSERDSGII 372
Query: 1063 SFTTRLLVPTSRXXXXXXXXXXXXTEMRNTTKANIRILSKENVPKVASSDDEMVQISGDL 1242
SFTTRLLV +SR TEMR TK+NIRILSKEN+PK+AS DDEMVQISGDL
Sbjct: 373 SFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDL 432
Query: 1243 DVAKDALLQVTSRLRANLFEREGAVSALVPVLPYLPMSVDSSDSLKYESRDRDSRRYGRE 1422
DVAKDAL+QV +RLRANLF+REGAV +PVLPY+P VD D L YES RD +R+GR
Sbjct: 433 DVAKDALVQVLTRLRANLFDREGAVPGFLPVLPYIPAPVDGPDVLNYES--RDGKRHGRG 490
Query: 1423 HSYSGGYGGSNDLPTSDLYGTY 1488
HSYS GYGGS+DL D YG+Y
Sbjct: 491 HSYSSGYGGSSDLGPVDTYGSY 512