BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00006983
         (5288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  2936   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  2843   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2843   0.0  
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun...  2835   0.0  
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su...  2823   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2936 bits (7612), Expect = 0.0
 Identities = 1444/1535 (94%), Positives = 1498/1535 (97%)
 Frame = -1

Query: 4988 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4809
            MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IEH ETTERGKPKP GLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 4808 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4629
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADEED+K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 4628 FKQAQKIRNPKNRLKKILDSCKSKTKCDGGDEIESQGQDTDEPVKKSRGGCGAQQPKITI 4449
            FKQAQKIRNPKNRLKKILD+CK+K+KC+GGDEIE+Q  D+DEPVKKSRGGCGAQQPK+TI
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180

Query: 4448 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4269
            EGMKMIAEYKIQ+KKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDC+LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240

Query: 4268 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 4089
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 4088 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3909
            EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 3908 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3729
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3728 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3549
            EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 3548 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3369
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 3368 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3189
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 3188 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3009
            L+R SAWH++ ETG ITPGDTQVRIEKGE++ GTLCKKTLG STGSLIHVIWEEVGPDAA
Sbjct: 601  LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3008 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMERINETISTAKNAVKELIRSAQDKDL 2829
            RKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATME+INETIS AKN VKELIR+AQ++ L
Sbjct: 661  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720

Query: 2828 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2649
            E EPGRTMMESFEN+VNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2648 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2469
            ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2468 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2289
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 2288 LDSLKMKKDEFDKVFRYEIDDGNWSPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 2109
            LDSLKMKK EFD+VF+YEIDD NW+PSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ
Sbjct: 901  LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960

Query: 2108 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1929
            LGTEI TTGDN+WPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961  LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020

Query: 1928 GDDMMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1749
            GDD++SMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1748 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1569
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 1568 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1389
            P+VS +KE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEE+
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 1388 DPDKISPWLLRVELNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 1209
             P+KISPWLLR+ELNREMM+DKKLSMADIAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1208 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENSGFVT 1029
            NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  K N+FDE+ GF  
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320

Query: 1028 EPEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 849
            E EWMLDTEGVNLLAV+CHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 848  SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 669
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440

Query: 668  LRGVTENIILGQLAPIGTGDCSLYLNEQMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 489
            LRGVTENI+LGQLAPIGTGDC+LYLN+QMLQ AI++QLPSYMEGLDFGMTP+RSPI+GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500

Query: 488  YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 384
            YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2843 bits (7370), Expect = 0.0
 Identities = 1393/1535 (90%), Positives = 1472/1535 (95%)
 Frame = -1

Query: 4988 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4809
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IEHGETTERGKPK +GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 4808 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4629
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKIL DEED K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 4628 FKQAQKIRNPKNRLKKILDSCKSKTKCDGGDEIESQGQDTDEPVKKSRGGCGAQQPKITI 4449
            FKQA +I+NPKNRL+KILD+CK+KTKC+GGDEI+ QGQD+D+PVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 4448 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4269
            EGMKM AEYK Q+KKNDDPEQLPEPVERKQ L+AERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 4268 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 4089
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 4088 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3909
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 3908 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3729
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3728 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3549
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 3548 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3369
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 3368 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3189
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 3188 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3009
            L R SAWH++ ETGHITPGDT VRIEKGE+++GTLCKK LG STGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 3008 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMERINETISTAKNAVKELIRSAQDKDL 2829
            RKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATME+INETIS AKN VK LI+ AQ++ L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 2828 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2649
            EPEPGRTMM+SFENKVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2648 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2469
            ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2468 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2289
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 2288 LDSLKMKKDEFDKVFRYEIDDGNWSPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 2109
            LDSLKMKK EF+++FRYE +D NW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 2108 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1929
            LGTEI TTG+N+WPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1928 GDDMMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1749
            G+D +S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1748 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1569
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1568 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1389
            P  + +KE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1388 DPDKISPWLLRVELNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 1209
             P+KISPWLLR+ELNREMM+DKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1208 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENSGFVT 1029
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  K N+FDEN GF  
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1028 EPEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 849
            E EWMLDTEGVNLLAV+ HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 848  SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 669
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 668  LRGVTENIILGQLAPIGTGDCSLYLNEQMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 489
            LRGVTENI+LGQLAPIGTG C+LYLN++ML+ AI++QLPSY++GLDFGMTP+RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 488  YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 384
            YH+GMMSPNYLLSPNLRLSPI+DAQFSPYVGGMAF
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 2843 bits (7370), Expect = 0.0
 Identities = 1393/1535 (90%), Positives = 1472/1535 (95%)
 Frame = -1

Query: 4988 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4809
            MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IEHGETTERGKPK +GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 4808 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4629
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKIL DEED K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 4628 FKQAQKIRNPKNRLKKILDSCKSKTKCDGGDEIESQGQDTDEPVKKSRGGCGAQQPKITI 4449
            FKQA +I+NPKNRL+KILD+CK+KTKC+GGDEI+ QGQD+D+PVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 4448 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4269
            EGMKM AEYK Q+KKNDDPEQLPEPVERKQ L+AERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 4268 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 4089
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 4088 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3909
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 3908 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3729
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3728 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3549
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 3548 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3369
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 3368 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3189
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 3188 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3009
            L R SAWH++ ETGHITPGDT VRIEKGE+++GTLCKK LG STGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 3008 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMERINETISTAKNAVKELIRSAQDKDL 2829
            RKFLGHTQWLVNYWLLQ  FSIGIGDTIADAATME+INETIS AKN VK LI+ AQ++ L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 2828 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2649
            EPEPGRTMM+SFENKVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2648 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2469
            ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2468 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2289
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 2288 LDSLKMKKDEFDKVFRYEIDDGNWSPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 2109
            LDSLKMKK EF+++FRYE +D NW P+YMLPEHVEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 2108 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1929
            LGTEI TTG+N+WPMPVNLKRLI NAQKTFK+D RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1928 GDDMMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1749
            G+D +S+EAQKNATLFFNILLRSTFASKRVL EYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1748 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1569
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1568 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1389
            P  + +KE+AK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1388 DPDKISPWLLRVELNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 1209
             P+KISPWLLR+ELNREMM+DKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1208 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENSGFVT 1029
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  K N+FDEN GF  
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1028 EPEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 849
            E EWMLDTEGVNLLAV+ HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 848  SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 669
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 668  LRGVTENIILGQLAPIGTGDCSLYLNEQMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 489
            LRGVTENI+LGQLAPIGTG C+LYLN++ML+ AI++QLPSY++GLDFGMTP+RSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 488  YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 384
            YH+GMMSPNYLLSPNLRLSPI+DAQFSPYVGGMAF
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
            polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 2835 bits (7350), Expect = 0.0
 Identities = 1391/1535 (90%), Positives = 1469/1535 (95%)
 Frame = -1

Query: 4988 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4809
            MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVV IE  ETTERGKPKP GLSD RLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60

Query: 4808 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4629
            DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEED+K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 4628 FKQAQKIRNPKNRLKKILDSCKSKTKCDGGDEIESQGQDTDEPVKKSRGGCGAQQPKITI 4449
            FKQA KI+NPKNRLKKILD+CK+KTKC+GGD+I+   QDTDEPVKKSRGGCGAQQP++TI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180

Query: 4448 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4269
            EGMKMIAEYK Q+KKNDD EQLPEPVERKQ L+AERVL VLKRISD+DC LLG NPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240

Query: 4268 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 4089
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL+KQE+ GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300

Query: 4088 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3909
            EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 3908 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3729
            TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3728 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3549
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 3548 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3369
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 3368 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3189
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 3188 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3009
            L+R +AWH+D E G ITPGDT VRIEKGE+++GT+CKKTLG STGSLIHVIWEEVGPDAA
Sbjct: 601  LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3008 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMERINETISTAKNAVKELIRSAQDKDL 2829
            RKFLGHTQWLVNYWLLQ GFSIGIGDTIADAATME+INETIS AKNAVKELIR AQ+K+L
Sbjct: 661  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720

Query: 2828 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2649
            EP+PGRTMMESFEN+VNQVLN+ARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2648 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2469
            ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2468 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2289
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 2288 LDSLKMKKDEFDKVFRYEIDDGNWSPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 2109
            LDSLKMKK EFD+VF+YE+DD NW+P+YM  +H++DLK IRE R+VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960

Query: 2108 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1929
            LGTEI TTGD++WP+PVNL+RLIWNAQKTFKVD RRPSD+HPME VEAVDKLQERLKVVP
Sbjct: 961  LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020

Query: 1928 GDDMMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1749
            GDD +S+EAQKNATLFF ILLRST ASKRVL++YRLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080

Query: 1748 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1569
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L 
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140

Query: 1568 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1389
            P  + +KE+AKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200

Query: 1388 DPDKISPWLLRVELNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 1209
             P+KISPWLLR+ELNREMM+DKKL+MADIAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1208 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENSGFVT 1029
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQ K ++FDEN GF T
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320

Query: 1028 EPEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 849
              EWMLDTEGVNLLAV+C+E+VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 848  SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 669
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440

Query: 668  LRGVTENIILGQLAPIGTGDCSLYLNEQMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 489
            LRGVTENI+LGQLAPIGTGDC+LYLN+ ML+ AI++QLPSYM+GLDFGMTPARSP+S TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTP 1500

Query: 488  YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 384
            YHDGMMSP+YLLSP+LRLSP TDAQFSPYV GM F
Sbjct: 1501 YHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535


>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
            max]
          Length = 1827

 Score = 2823 bits (7317), Expect = 0.0
 Identities = 1385/1535 (90%), Positives = 1463/1535 (95%)
 Frame = -1

Query: 4988 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVHIEHGETTERGKPKPSGLSDPRLGTI 4809
            MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVV IEHGETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 4808 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDYK 4629
            DRK+KCETC A+MAECPGHFGHLELAKPMFHIGFLKTVL+IMRCVCFNCSKILADE D+K
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 4628 FKQAQKIRNPKNRLKKILDSCKSKTKCDGGDEIESQGQDTDEPVKKSRGGCGAQQPKITI 4449
            FKQA +IRNPKNRLKKILD+CK+K+KC+GGDEI+  GQDTDEPVKKSRGGCGAQQPKITI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 4448 EGMKMIAEYKIQKKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCMLLGLNPKYAR 4269
            EGMKMIAEYK Q+KK+DD EQLPEPVERKQ LSAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 4268 PDWMILQVLXXXXXXXXPSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 4089
            PDWMILQVL        PSVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 4088 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3909
            EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 3908 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 3729
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 3728 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3549
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 3548 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3369
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 3368 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 3189
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAPAILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 3188 LMRQSAWHADGETGHITPGDTQVRIEKGEVITGTLCKKTLGASTGSLIHVIWEEVGPDAA 3009
            L+R S+WH++ E G ITPGDT VRIEKGE++TGTLCKKTLG STGSLIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 3008 RKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMERINETISTAKNAVKELIRSAQDKDL 2829
            RKFLGHTQWLVNYWLLQ  FSIGIGDTIADA+TME IN+TIS AK  VK+LIR AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720

Query: 2828 EPEPGRTMMESFENKVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 2649
            E EPGRTMM+SFEN+VNQ LN+ARDDAG+SA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 2648 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2469
            ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 2468 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2289
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 2288 LDSLKMKKDEFDKVFRYEIDDGNWSPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 2109
            LDSLKMKK EFD+VFRYE DD NW P+YML E VEDLKTIREFRNVF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 2108 LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1929
            L TEI TTGD++ P+PVNLKRLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961  LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1928 GDDMMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1749
            G+D++S EAQKNATL FNILLRSTFASKRVL+EYRL+REAFEWV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 1748 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1569
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140

Query: 1568 PNVSSSKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1389
             +V  +KE+AK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFVKSYYEMPDEE+
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200

Query: 1388 DPDKISPWLLRVELNREMMIDKKLSMADIAEKINLEFDDDLTCIFNDDNADKLILRIRIM 1209
              +KISPWLLR+ELNREMM+DKKLSMADIAEKINLEFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1208 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQQKTNRFDENSGFVT 1029
            NDEAPKGE+QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK  K  +FDEN GF  
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320

Query: 1028 EPEWMLDTEGVNLLAVICHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 849
              EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 848  SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 669
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 668  LRGVTENIILGQLAPIGTGDCSLYLNEQMLQQAIDIQLPSYMEGLDFGMTPARSPISGTP 489
            LRGVTENI+LGQLAPIGTG+C+LYLN++ML+ AI++QLPSYM+GLDFGMTPARSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500

Query: 488  YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 384
            YH+G+MSP+YLLSPNLRLSP +DAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535