BLASTX nr result
ID: Bupleurum21_contig00006969
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00006969
(1262 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi... 549 e-154
ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containi... 530 e-148
ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 519 e-145
ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containi... 518 e-145
ref|XP_002299777.1| predicted protein [Populus trichocarpa] gi|2... 518 e-144
>ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 549 bits (1415), Expect = e-154
Identities = 268/418 (64%), Positives = 330/418 (78%)
Frame = -2
Query: 1261 TFVTLLSCCANLHLQGLHFGICLHGFVKKLGFDVNDVKVGTAIVNMYGKCGQMGLAKLSF 1082
TF+TLLS C + L+GL FG +H +V+KLG D +V VGTA+V+MY KCGQ+ LA L F
Sbjct: 91 TFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMF 150
Query: 1081 DEMGVKNKVSWNSIIDGYMRNGEFEDAVKVFDEMPDKDVISYTVLIDGFVKKGYYEQGLK 902
DEM V+N VSWN++IDG MRNGE +A+ +FD+M ++D IS+T +I GFVKKG +EQ L+
Sbjct: 151 DEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALE 210
Query: 901 WFQEMLVDGVEPDYVTISSVXXXXXXXXXXXXXLWINRFVLKKAFKENIRVKNSLIDMYA 722
WF+EM + GVEPDYVTI SV LWINRFV+K+ FK+NI++ NSLIDMY+
Sbjct: 211 WFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYS 270
Query: 721 RCGSIEFARQIFKSMSERSLVTWNSIIVGFALNGNPEEALEYFKRMQKDGFEPDGVSFTG 542
RCG I ARQ+F+ M +RSLV+WNS+IVGFALNG+ EEALE+F M+K+GF PDGVSFTG
Sbjct: 271 RCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTG 330
Query: 541 ALTACSHAGLVDEGLELFETMKKVYRIVPRIEHYGCLVDLYSRAGRLEEAMHVIEKMPMK 362
ALTACSH+GLVDEGL+ F+ MK+ +I PRIEHYGCLVDLYSRAGRLE+A++VI MPMK
Sbjct: 331 ALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMK 390
Query: 361 PNEVVLGSLLAACRTRGDITLAERLINYLTELGSRSDSNYVLVSNMYAALGSWHSASNVR 182
PNEVVLGSLLAACRT GD+ LAERL+ YL E+ SDSNYVL+SN+YAA+G W AS VR
Sbjct: 391 PNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAAVGRWDGASKVR 450
Query: 181 RKMKARGIQKKPGVSSIEIDCMVHEFVAGDRTHADEVKIHEMLDLLSIELGMLGYVHE 8
+KMKA GI KKPG SSIE+D +HEFVAGD+TH + I+ MLD L +EL + GYV E
Sbjct: 451 KKMKALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQNIYAMLDHLFLELRICGYVPE 508
>ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 530 bits (1366), Expect = e-148
Identities = 253/421 (60%), Positives = 333/421 (79%), Gaps = 1/421 (0%)
Frame = -2
Query: 1261 TFVTLLSCCANLHLQG-LHFGICLHGFVKKLGFDVNDVKVGTAIVNMYGKCGQMGLAKLS 1085
TF+TLLS CA+ + + FG +H V+KLG D+NDV VGTA+++MY KCG++ A+L+
Sbjct: 93 TFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLA 152
Query: 1084 FDEMGVKNKVSWNSIIDGYMRNGEFEDAVKVFDEMPDKDVISYTVLIDGFVKKGYYEQGL 905
FD+MGV+N VSWN++IDGYMRNG+FEDA++VFD +P K+ IS+T LI GFVKK Y+E+ L
Sbjct: 153 FDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEAL 212
Query: 904 KWFQEMLVDGVEPDYVTISSVXXXXXXXXXXXXXLWINRFVLKKAFKENIRVKNSLIDMY 725
+ F+EM + GV PDYVT+ +V LW++R V+ + F+ N++V NSLIDMY
Sbjct: 213 ECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMY 272
Query: 724 ARCGSIEFARQIFKSMSERSLVTWNSIIVGFALNGNPEEALEYFKRMQKDGFEPDGVSFT 545
+RCG I+ ARQ+F M +R+LV+WNSIIVGFA+NG +EAL YF MQ++GF+PDGVS+T
Sbjct: 273 SRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYT 332
Query: 544 GALTACSHAGLVDEGLELFETMKKVYRIVPRIEHYGCLVDLYSRAGRLEEAMHVIEKMPM 365
GAL ACSHAGL+ EGL +FE MK+V RI+PRIEHYGCLVDLYSRAGRLEEA++V++ MPM
Sbjct: 333 GALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPM 392
Query: 364 KPNEVVLGSLLAACRTRGDITLAERLINYLTELGSRSDSNYVLVSNMYAALGSWHSASNV 185
KPNEV+LGSLLAACRT+G+I LAE ++NYL EL S DSNYVL+SN+YAA+G W A+ V
Sbjct: 393 KPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKV 452
Query: 184 RRKMKARGIQKKPGVSSIEIDCMVHEFVAGDRTHADEVKIHEMLDLLSIELGMLGYVHET 5
RR+MK RGIQKKPG SSIEID +H+FV+GD++H ++ I+ L+ LS EL + GY+ +
Sbjct: 453 RRRMKERGIQKKPGFSSIEIDSSIHKFVSGDKSHEEKDHIYAALEFLSFELQLCGYIPDF 512
Query: 4 S 2
S
Sbjct: 513 S 513
>ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 519 bits (1336), Expect = e-145
Identities = 250/416 (60%), Positives = 320/416 (76%)
Frame = -2
Query: 1261 TFVTLLSCCANLHLQGLHFGICLHGFVKKLGFDVNDVKVGTAIVNMYGKCGQMGLAKLSF 1082
TF+TLLS CA+ + F LHG+ K G D V VGTA+++MY KC Q+G A+ F
Sbjct: 94 TFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVF 153
Query: 1081 DEMGVKNKVSWNSIIDGYMRNGEFEDAVKVFDEMPDKDVISYTVLIDGFVKKGYYEQGLK 902
+GVKN VSWN++++G+MRNGE E A+++FDEMP +D IS+T LI+G +K GY EQ L+
Sbjct: 154 YNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALE 213
Query: 901 WFQEMLVDGVEPDYVTISSVXXXXXXXXXXXXXLWINRFVLKKAFKENIRVKNSLIDMYA 722
F +M GV DYV+I +V LW++RFV+ + FK+NI++ NSLIDMY+
Sbjct: 214 CFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYS 273
Query: 721 RCGSIEFARQIFKSMSERSLVTWNSIIVGFALNGNPEEALEYFKRMQKDGFEPDGVSFTG 542
RCG IEFARQ+F M++R+LV+WNSIIVGFA+NG +E+LE+F MQK+GF+PDGVS+TG
Sbjct: 274 RCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTG 333
Query: 541 ALTACSHAGLVDEGLELFETMKKVYRIVPRIEHYGCLVDLYSRAGRLEEAMHVIEKMPMK 362
ALTACSHAGLV++GLELF+ MK V++I PRIEHYGC+VDLY RAGRLE+A+++IE+MPMK
Sbjct: 334 ALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMK 393
Query: 361 PNEVVLGSLLAACRTRGDITLAERLINYLTELGSRSDSNYVLVSNMYAALGSWHSASNVR 182
PNEVVLGSLLAACRT GD+ LAERL+ +L +L D+ YVL+SN+YAA+G W A+NVR
Sbjct: 394 PNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVR 453
Query: 181 RKMKARGIQKKPGVSSIEIDCMVHEFVAGDRTHADEVKIHEMLDLLSIELGMLGYV 14
R MKARG+QKKPG SS+EID VHEFVAGD HAD I+ MLDLL EL + GYV
Sbjct: 454 RTMKARGVQKKPGYSSVEIDGKVHEFVAGDNYHADADNIYSMLDLLCHELKVCGYV 509
>ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 518 bits (1335), Expect = e-145
Identities = 250/416 (60%), Positives = 320/416 (76%)
Frame = -2
Query: 1261 TFVTLLSCCANLHLQGLHFGICLHGFVKKLGFDVNDVKVGTAIVNMYGKCGQMGLAKLSF 1082
TF+TLLS CA+ + F LHG+ K G D V VGTA+++MY KC Q+G A+ F
Sbjct: 94 TFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVF 153
Query: 1081 DEMGVKNKVSWNSIIDGYMRNGEFEDAVKVFDEMPDKDVISYTVLIDGFVKKGYYEQGLK 902
+GVKN VSWN++++G+MRNGE E A+++FDEMP +D IS+T LI+G +K GY EQ L+
Sbjct: 154 YNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALE 213
Query: 901 WFQEMLVDGVEPDYVTISSVXXXXXXXXXXXXXLWINRFVLKKAFKENIRVKNSLIDMYA 722
F +M GV DYV+I +V LW++RFV+ + FK+NI++ NSLIDMY+
Sbjct: 214 CFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYS 273
Query: 721 RCGSIEFARQIFKSMSERSLVTWNSIIVGFALNGNPEEALEYFKRMQKDGFEPDGVSFTG 542
RCG IEFARQ+F M++R+LV+WNSIIVGFA+NG +E+LE+F MQK+GF+PDGVS+TG
Sbjct: 274 RCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTG 333
Query: 541 ALTACSHAGLVDEGLELFETMKKVYRIVPRIEHYGCLVDLYSRAGRLEEAMHVIEKMPMK 362
ALTACSHAGLV++GLELF+ MK V++I PRIEHYGC+VDLY RAGRLE+A+++IE+MPMK
Sbjct: 334 ALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMK 393
Query: 361 PNEVVLGSLLAACRTRGDITLAERLINYLTELGSRSDSNYVLVSNMYAALGSWHSASNVR 182
PNEVVLGSLLAACRT GD+ LAERL+ +L +L D+ YVL+SN+YAA+G W A+NVR
Sbjct: 394 PNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVR 453
Query: 181 RKMKARGIQKKPGVSSIEIDCMVHEFVAGDRTHADEVKIHEMLDLLSIELGMLGYV 14
R MKARG+QKKPG SS+EID VHEFVAGD HAD I+ MLDLL EL + GYV
Sbjct: 454 RTMKARGVQKKPGYSSVEIDGKVHEFVAGDNYHADADNIYSMLDLLCHELKVCGYV 509
>ref|XP_002299777.1| predicted protein [Populus trichocarpa] gi|222847035|gb|EEE84582.1|
predicted protein [Populus trichocarpa]
Length = 439
Score = 518 bits (1333), Expect = e-144
Identities = 250/418 (59%), Positives = 322/418 (77%)
Frame = -2
Query: 1261 TFVTLLSCCANLHLQGLHFGICLHGFVKKLGFDVNDVKVGTAIVNMYGKCGQMGLAKLSF 1082
TF+TLLS CA+L QG G LH + +KLG D ++ VGTA+V+MY KCG + L++L F
Sbjct: 12 TFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELSRLCF 71
Query: 1081 DEMGVKNKVSWNSIIDGYMRNGEFEDAVKVFDEMPDKDVISYTVLIDGFVKKGYYEQGLK 902
DE+ VKN SWN++IDG++RNG+ +A++VFDEMP++ VIS+TVLI+GFVK G +E+ L+
Sbjct: 72 DELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALE 131
Query: 901 WFQEMLVDGVEPDYVTISSVXXXXXXXXXXXXXLWINRFVLKKAFKENIRVKNSLIDMYA 722
WF++M V VEPD VTI +V LW++R+ LKK ++N+++ NSLID+Y+
Sbjct: 132 WFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYS 191
Query: 721 RCGSIEFARQIFKSMSERSLVTWNSIIVGFALNGNPEEALEYFKRMQKDGFEPDGVSFTG 542
RCG+IE ARQ+F+ M ER+LV+WNSII G A NG EEALE+F MQK GF+P+ VSFTG
Sbjct: 192 RCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTG 251
Query: 541 ALTACSHAGLVDEGLELFETMKKVYRIVPRIEHYGCLVDLYSRAGRLEEAMHVIEKMPMK 362
ALTACSH GLVDEGL+ F+ M++V++I PRIEHYGC+VDLYSRAGRLE+AM V++ MPMK
Sbjct: 252 ALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMK 311
Query: 361 PNEVVLGSLLAACRTRGDITLAERLINYLTELGSRSDSNYVLVSNMYAALGSWHSASNVR 182
PNEVV+GSLLAACRTRGD+ LAERL+NYL L +DSNYVL+SN+YAA+G W A R
Sbjct: 312 PNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVGRWDGACKQR 371
Query: 181 RKMKARGIQKKPGVSSIEIDCMVHEFVAGDRTHADEVKIHEMLDLLSIELGMLGYVHE 8
MKA GIQKKPG SSIEI C +HEFVAGD++H I+ ML+LLS + + GYV E
Sbjct: 372 MTMKALGIQKKPGFSSIEIGCDIHEFVAGDKSHDKAEDIYSMLELLSFDQALCGYVPE 429