BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00006962
         (550 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]        69   7e-13
ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|2...    76   4e-12
ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricin...    71   1e-10
ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5...    67   1e-09
gb|EAZ42119.1| hypothetical protein OsJ_26678 [Oryza sativa Japo...    67   2e-09

>gb|AEI98616.1| hypothetical protein 111O18.3 [Coffea canephora]
          Length = 643

 Score = 69.3 bits (168), Expect(2) = 7e-13
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = -3

Query: 113 VVREIDVYFTPNSDPDTQLYVMQYPLKPCWRPYELDD 3
           +VREIDVY TP+ DP+T+LYV+QYPL+P WRPYELDD
Sbjct: 107 IVREIDVYLTPSIDPNTKLYVLQYPLRPLWRPYELDD 143



 Score = 29.3 bits (64), Expect(2) = 7e-13
 Identities = 23/85 (27%), Positives = 29/85 (34%)
 Frame = -2

Query: 489 MDLDDLEAPGQVQSRRTRFAXXXXXXXXXXXSEQSHDPNSNLIPPVQHESAIDSGGIVKD 310
           MD DDL+ P Q  +R +RFA                 P  +   P     A  S  I K 
Sbjct: 1   MDFDDLDEPSQAPTRPSRFA-----------------PKGSKFKPRTEPVAATSNSIAKK 43

Query: 309 ELEIPVPPTDAVKMDTNLKPDPIED 235
           E E+   P   +   T       ED
Sbjct: 44  E-ELDSKPVSPINSSTTAAAGKAED 67


>ref|XP_002310208.1| predicted protein [Populus trichocarpa] gi|222853111|gb|EEE90658.1|
           predicted protein [Populus trichocarpa]
          Length = 667

 Score = 75.9 bits (185), Expect = 4e-12
 Identities = 31/37 (83%), Positives = 36/37 (97%)
 Frame = -3

Query: 113 VVREIDVYFTPNSDPDTQLYVMQYPLKPCWRPYELDD 3
           VVREIDVY+TP+ DP+TQLYVMQYPL+PCWRPYELD+
Sbjct: 111 VVREIDVYYTPSVDPNTQLYVMQYPLRPCWRPYELDE 147


>ref|XP_002525112.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223535571|gb|EEF37239.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 677

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = -3

Query: 113 VVREIDVYFTPNSDPDTQLYVMQYPLKPCWRPYELDD 3
           +VREIDV+FTP+ D  TQLYVMQYPL+PCWRPYELD+
Sbjct: 117 IVREIDVFFTPSIDSATQLYVMQYPLRPCWRPYELDE 153


>ref|XP_003611964.1| DNA-directed RNA polymerase III subunit RPC5 [Medicago truncatula]
           gi|358344405|ref|XP_003636280.1| DNA-directed RNA
           polymerase III subunit RPC5 [Medicago truncatula]
           gi|355502215|gb|AES83418.1| DNA-directed RNA polymerase
           III subunit RPC5 [Medicago truncatula]
           gi|355513299|gb|AES94922.1| DNA-directed RNA polymerase
           III subunit RPC5 [Medicago truncatula]
          Length = 683

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 28/37 (75%), Positives = 34/37 (91%)
 Frame = -3

Query: 113 VVREIDVYFTPNSDPDTQLYVMQYPLKPCWRPYELDD 3
           VVREIDVYF+P+ D DT+LYVMQYPL+P WRPY+LD+
Sbjct: 108 VVREIDVYFSPSIDNDTKLYVMQYPLRPSWRPYDLDE 144


>gb|EAZ42119.1| hypothetical protein OsJ_26678 [Oryza sativa Japonica Group]
          Length = 673

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 29/39 (74%), Positives = 34/39 (87%), Gaps = 1/39 (2%)
 Frame = -3

Query: 116 HVVREIDVYFTPNS-DPDTQLYVMQYPLKPCWRPYELDD 3
           +V+REIDVYFTP   D DT LYVMQYPL+PCWRPYEL++
Sbjct: 113 YVLREIDVYFTPKPFDEDTMLYVMQYPLRPCWRPYELNE 151