BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00006921
         (2859 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGA19555.1| Rep [Turnip curly top virus]                           390   e-105
gb|AGA19579.1| Rep [Turnip curly top virus]                           388   e-105
gb|AGA19549.1| Rep [Turnip curly top virus]                           387   e-105
gb|AGA19573.1| Rep [Turnip curly top virus]                           387   e-105
gb|AGA19561.1| Rep [Turnip curly top virus]                           387   e-105

>gb|AGA19555.1| Rep [Turnip curly top virus]
          Length = 371

 Score =  390 bits (1002), Expect = e-105
 Identities = 181/321 (56%), Positives = 241/321 (75%), Gaps = 3/321 (0%)
 Frame = -1

Query: 2859 CSIDKETAMEIIKNISCTSNKKFIRVSQELHEDGEPHLHVLIQFEGRVQIYNPRHFNITH 2680
            C + KE A+  ++ I C S KKFIR+S+ELHE+GEPHLHVLIQFEG++Q+YNPRHF++  
Sbjct: 22   CHLSKEDALLQLQTIECPSTKKFIRISRELHENGEPHLHVLIQFEGKIQLYNPRHFDLRD 81

Query: 2679 PLSSTQFHPNMQGAKSSSDVKAYIEKGGEYVDWGEIQRDPRRAYRAMKDANEAYSKALNT 2500
              S+   HPN+QGAKSSSDVK+YIEK G+Y DWGE Q DPR A    + AN+A ++ALN+
Sbjct: 82   RGSARVCHPNIQGAKSSSDVKSYIEKDGDYTDWGEFQIDPRSARGGQQTANDACAEALNS 141

Query: 2499 GNTQLALDTLKELAPRDFIMKFHNISNNLTRIFETPIAAYASKWERSSFIVPDNIQQWV- 2323
            G  + AL  ++E  P+D+I +FHN+  NL  IF  P   Y  K+  + F++ D+I  W+ 
Sbjct: 142  GTAEAALAVIREKLPKDYIFQFHNLKPNLAAIFNPPPVGYIPKYNHTQFVLTDDILDWLE 201

Query: 2322 GDTFIQDETSPAGP--LKLNRSVDRPMSIIIEGPSRTGKTEWARSLGNHNYISGHLDFNK 2149
             + F+++  SPAGP   K+  ++DRP SIIIEGPSRTGKT WARSLG+HNYI+GHLDF+ 
Sbjct: 202  SNFFLEESISPAGPSQYKVIPTIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFST 261

Query: 2148 NTFSNDVEYNVIDNIMPKYLSMKYWKELIGAKHDWQSNCKYSEPVQIKGGVPAIILCNPG 1969
              +++DV YNVID++ P+YL MK+WK LIGA+ +WQ+N KY +P  IKGG+PAIILCNPG
Sbjct: 262  RIYNDDVTYNVIDDVDPQYLKMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPAIILCNPG 321

Query: 1968 KGTSYRDFLDKPYNAALKAWT 1906
            +G SY+ FLDKP N ALK+W+
Sbjct: 322  EGASYQTFLDKPENEALKSWS 342


>gb|AGA19579.1| Rep [Turnip curly top virus]
          Length = 371

 Score =  388 bits (996), Expect = e-105
 Identities = 179/321 (55%), Positives = 242/321 (75%), Gaps = 3/321 (0%)
 Frame = -1

Query: 2859 CSIDKETAMEIIKNISCTSNKKFIRVSQELHEDGEPHLHVLIQFEGRVQIYNPRHFNITH 2680
            C++ KE A+  ++ I C S KKFIR+S+ELHE+GEPHLHVLIQFEG++Q+YNPRHF++  
Sbjct: 22   CNLSKEEALLQLQAIECPSTKKFIRISRELHENGEPHLHVLIQFEGKIQLYNPRHFDLRD 81

Query: 2679 PLSSTQFHPNMQGAKSSSDVKAYIEKGGEYVDWGEIQRDPRRAYRAMKDANEAYSKALNT 2500
              SS   HPN+QGAKSSSDVK+YIEK G+Y DWGE Q DPR A    + AN+A ++ALN+
Sbjct: 82   RGSSRICHPNIQGAKSSSDVKSYIEKDGDYTDWGEFQIDPRSARGGQQTANDACAEALNS 141

Query: 2499 GNTQLALDTLKELAPRDFIMKFHNISNNLTRIFETPIAAYASKWERSSFIVPDNIQQWV- 2323
            G  + AL  ++E  P+D+I +FHN+  NL  IF  P   Y  K+  + F++ D+I  W+ 
Sbjct: 142  GTAEAALAVIREKLPKDYIFQFHNLKPNLAAIFNPPTVGYIPKYNHTQFVLTDDILDWLE 201

Query: 2322 GDTFIQDETSPAGP--LKLNRSVDRPMSIIIEGPSRTGKTEWARSLGNHNYISGHLDFNK 2149
             + ++++  +PAGP   K+  ++DRP SIIIEGPSRTGKT WARSLG+HNYI+GHLDF+ 
Sbjct: 202  ANFYLEEGITPAGPSKYKVIPTIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFST 261

Query: 2148 NTFSNDVEYNVIDNIMPKYLSMKYWKELIGAKHDWQSNCKYSEPVQIKGGVPAIILCNPG 1969
              +++DV YNVID++ P+YL MK+WK LIGA+ +WQ+N KY +P  IKGG+P+IILCNPG
Sbjct: 262  KVYNDDVTYNVIDDVDPQYLKMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPG 321

Query: 1968 KGTSYRDFLDKPYNAALKAWT 1906
            +G SY+ FLDKP N ALK+W+
Sbjct: 322  EGASYQTFLDKPENEALKSWS 342


>gb|AGA19549.1| Rep [Turnip curly top virus]
          Length = 371

 Score =  387 bits (995), Expect = e-105
 Identities = 181/321 (56%), Positives = 240/321 (74%), Gaps = 3/321 (0%)
 Frame = -1

Query: 2859 CSIDKETAMEIIKNISCTSNKKFIRVSQELHEDGEPHLHVLIQFEGRVQIYNPRHFNITH 2680
            C++ KE A+  ++ I C S KKFIR+S+ELHE+GEPHLHVLIQFEG++Q+YNPRHF++  
Sbjct: 22   CNLSKEEALLQLQAIECPSTKKFIRISRELHENGEPHLHVLIQFEGKIQLYNPRHFDLRD 81

Query: 2679 PLSSTQFHPNMQGAKSSSDVKAYIEKGGEYVDWGEIQRDPRRAYRAMKDANEAYSKALNT 2500
              SS   HPN+QGAKSSSDVK+YIEK G+Y DWGE Q DPR A    + AN+A ++ALN+
Sbjct: 82   RGSSRICHPNIQGAKSSSDVKSYIEKDGDYTDWGEFQIDPRSARGGQQTANDACAEALNS 141

Query: 2499 GNTQLALDTLKELAPRDFIMKFHNISNNLTRIFETPIAAYASKWERSSFIVPDNIQQWVG 2320
            G  + AL  ++E  P+D+I +FHN+  NL  IF  P   Y  K+  + F++ D+I  W+ 
Sbjct: 142  GTAEAALAVIREKLPKDYIFQFHNLKPNLAAIFNPPPVGYIPKYNHTQFVLTDDILDWLE 201

Query: 2319 DTFIQDE-TSPAGP--LKLNRSVDRPMSIIIEGPSRTGKTEWARSLGNHNYISGHLDFNK 2149
              F  +E  +PAGP   K+  ++DRP SIIIEGPSRTGKT WARSLG+HNYI+GHLDF+ 
Sbjct: 202  ANFYPEEGITPAGPSKYKVIPTIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFST 261

Query: 2148 NTFSNDVEYNVIDNIMPKYLSMKYWKELIGAKHDWQSNCKYSEPVQIKGGVPAIILCNPG 1969
              +++DV YNVID++ P+YL MK+WK LIGA+ +WQ+N KY +P  IKGG+P+IILCNPG
Sbjct: 262  RVYNDDVTYNVIDDVDPQYLKMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPG 321

Query: 1968 KGTSYRDFLDKPYNAALKAWT 1906
            +G SY+ FLDKP N ALK+W+
Sbjct: 322  EGASYQTFLDKPENEALKSWS 342


>gb|AGA19573.1| Rep [Turnip curly top virus]
          Length = 371

 Score =  387 bits (994), Expect = e-105
 Identities = 179/321 (55%), Positives = 242/321 (75%), Gaps = 3/321 (0%)
 Frame = -1

Query: 2859 CSIDKETAMEIIKNISCTSNKKFIRVSQELHEDGEPHLHVLIQFEGRVQIYNPRHFNITH 2680
            C++ KE A+  ++ I C S KKFIR+S+ELHE+GEPHLHVLIQFEG++Q+YNPRHF++  
Sbjct: 22   CNLSKEEALLQLQAIECPSTKKFIRISRELHENGEPHLHVLIQFEGKIQLYNPRHFDLRD 81

Query: 2679 PLSSTQFHPNMQGAKSSSDVKAYIEKGGEYVDWGEIQRDPRRAYRAMKDANEAYSKALNT 2500
              SS   HPN+QGAKSSSDVK+YIEK G+Y DWGE Q DPR A    + AN+A ++ALN+
Sbjct: 82   RGSSRICHPNIQGAKSSSDVKSYIEKDGDYTDWGEFQIDPRSARGGQQTANDACAEALNS 141

Query: 2499 GNTQLALDTLKELAPRDFIMKFHNISNNLTRIFETPIAAYASKWERSSFIVPDNIQQWV- 2323
            G  + AL  ++E  P+D+I +FHN+  NL  IF  P   Y  K+  + F++ D+I  W+ 
Sbjct: 142  GTAEAALAVIREKLPKDYIFQFHNLKPNLAAIFNPPPVGYIPKYNHTQFVLTDDILDWLE 201

Query: 2322 GDTFIQDETSPAGP--LKLNRSVDRPMSIIIEGPSRTGKTEWARSLGNHNYISGHLDFNK 2149
             + ++++  +PAGP   K+  ++DRP SIIIEGPSRTGKT WARSLG+HNYI+GHLDF+ 
Sbjct: 202  ANFYLEEGITPAGPSKYKVIPTIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFST 261

Query: 2148 NTFSNDVEYNVIDNIMPKYLSMKYWKELIGAKHDWQSNCKYSEPVQIKGGVPAIILCNPG 1969
              +++DV YNVID++ P+YL MK+WK LIGA+ +WQ+N KY +P  IKGG+P+IILCNPG
Sbjct: 262  RVYNDDVTYNVIDDVDPQYLKMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPG 321

Query: 1968 KGTSYRDFLDKPYNAALKAWT 1906
            +G SY+ FLDKP N ALK+W+
Sbjct: 322  EGASYQTFLDKPENEALKSWS 342


>gb|AGA19561.1| Rep [Turnip curly top virus]
          Length = 371

 Score =  387 bits (994), Expect = e-105
 Identities = 179/321 (55%), Positives = 242/321 (75%), Gaps = 3/321 (0%)
 Frame = -1

Query: 2859 CSIDKETAMEIIKNISCTSNKKFIRVSQELHEDGEPHLHVLIQFEGRVQIYNPRHFNITH 2680
            C++ KE A+  ++ I C S KKFIR+S+ELHE+GEPHLHVLIQFEG++Q+YNPRHF++  
Sbjct: 22   CNLSKEEALLQLQAIECPSTKKFIRISRELHENGEPHLHVLIQFEGKIQLYNPRHFDLRD 81

Query: 2679 PLSSTQFHPNMQGAKSSSDVKAYIEKGGEYVDWGEIQRDPRRAYRAMKDANEAYSKALNT 2500
              SS   HPN+QGAKSSSDVK+YIEK G+Y DWGE Q DPR A    + AN+A ++ALN+
Sbjct: 82   RGSSRICHPNIQGAKSSSDVKSYIEKDGDYTDWGEFQIDPRSARGGQQTANDACAEALNS 141

Query: 2499 GNTQLALDTLKELAPRDFIMKFHNISNNLTRIFETPIAAYASKWERSSFIVPDNIQQWV- 2323
            G  + AL  ++E  P+D+I +FHN+  NL  IF  P   Y  K+  + F++ D+I  W+ 
Sbjct: 142  GTAEAALAVIREKLPKDYIFQFHNLKPNLAAIFNPPPVGYIPKYNHTQFVLTDDILDWLE 201

Query: 2322 GDTFIQDETSPAGP--LKLNRSVDRPMSIIIEGPSRTGKTEWARSLGNHNYISGHLDFNK 2149
             + ++++  +PAGP   K+  ++DRP SIIIEGPSRTGKT WARSLG+HNYI+GHLDF+ 
Sbjct: 202  ANFYLEEGITPAGPSKYKVIPTIDRPKSIIIEGPSRTGKTLWARSLGSHNYITGHLDFST 261

Query: 2148 NTFSNDVEYNVIDNIMPKYLSMKYWKELIGAKHDWQSNCKYSEPVQIKGGVPAIILCNPG 1969
              +++DV YNVID++ P+YL MK+WK LIGA+ +WQ+N KY +P  IKGG+P+IILCNPG
Sbjct: 262  RVYNDDVTYNVIDDVDPQYLKMKHWKHLIGAQKEWQTNLKYGKPRIIKGGIPSIILCNPG 321

Query: 1968 KGTSYRDFLDKPYNAALKAWT 1906
            +G SY+ FLDKP N ALK+W+
Sbjct: 322  EGASYQTFLDKPENEALKSWS 342