BLASTX nr result
ID: Bupleurum21_contig00006840
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00006840
(251 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002321443.1| predicted protein [Populus trichocarpa] gi|2... 114 6e-24
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi... 111 7e-23
ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containi... 111 7e-23
emb|CBI23556.3| unnamed protein product [Vitis vinifera] 111 7e-23
ref|XP_002522011.1| pentatricopeptide repeat-containing protein,... 107 8e-22
>ref|XP_002321443.1| predicted protein [Populus trichocarpa] gi|222868439|gb|EEF05570.1|
predicted protein [Populus trichocarpa]
Length = 723
Score = 114 bits (286), Expect = 6e-24
Identities = 54/83 (65%), Positives = 68/83 (81%)
Frame = +1
Query: 1 ALIDMFAKGLGDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFV 180
ALIDMF KG GDL+SA VFD M +RN VTWTLMITR+ Q+G+S DAV+LF+DMV +G+V
Sbjct: 83 ALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYV 142
Query: 181 ADQFTFSSVISGCAELGWLSVGK 249
D+FT S V+S CAE+G LS+G+
Sbjct: 143 PDRFTLSGVVSACAEMGLLSLGR 165
Score = 67.8 bits (164), Expect = 9e-10
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 ALIDMFAKGLGD--LKSARMVFDEMNERNAVTWTLMITRYAQMG-YSSDAVELFVDMVEN 171
+L+DM+AK + D + AR VFD M N ++WT +IT Y Q G +A+ELF++MV+
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQG 244
Query: 172 GFVADQFTFSSVISGCAELGWLSVGK 249
+ FTFSSV+ CA L + +G+
Sbjct: 245 QVKPNHFTFSSVLKACANLSDIWLGE 270
Score = 66.2 bits (160), Expect = 3e-09
Identities = 31/82 (37%), Positives = 57/82 (69%)
Frame = +1
Query: 1 ALIDMFAKGLGDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFV 180
ALI M+++ G++++A VF+EM + N ++WT MIT +A+ G+++ A+E F M+E G
Sbjct: 391 ALISMYSR-CGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVS 449
Query: 181 ADQFTFSSVISGCAELGWLSVG 246
++ T+ +V+S C+ +G +S G
Sbjct: 450 PNEVTYIAVLSACSHVGLISEG 471
>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 111 bits (277), Expect = 7e-23
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +1
Query: 4 LIDMFAKGLGDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFVA 183
LIDMF KG GDL SA VFD+M ERN VTWTLMITR+AQ+G + DA++LF+DM +G+V
Sbjct: 170 LIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP 229
Query: 184 DQFTFSSVISGCAELGWLSVGK 249
D+FT+SSV+S C ELG L++GK
Sbjct: 230 DRFTYSSVLSACTELGLLALGK 251
Score = 71.6 bits (174), Expect = 6e-11
Identities = 32/83 (38%), Positives = 60/83 (72%)
Frame = +1
Query: 1 ALIDMFAKGLGDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFV 180
ALI M+++ G++++A VF+EM +RN ++WT MIT +A+ G+++ A+E+F M+E G
Sbjct: 477 ALISMYSR-CGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTK 535
Query: 181 ADQFTFSSVISGCAELGWLSVGK 249
++ T+ +V+S C+ +G +S G+
Sbjct: 536 PNEITYVAVLSACSHVGMISEGQ 558
Score = 61.2 bits (147), Expect = 8e-08
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 ALIDMFAKGLGD--LKSARMVFDEMNERNAVTWTLMITRYAQMG-YSSDAVELFVDMVEN 171
+L+DM+AK D + +R VF++M E N ++WT +IT Y Q G +A+ELF M+
Sbjct: 271 SLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISG 330
Query: 172 GFVADQFTFSSVISGCAEL 228
+ F+FSSV+ C L
Sbjct: 331 HIRPNHFSFSSVLKACGNL 349
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/83 (33%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +1
Query: 4 LIDMFAKGLGDLKSARMVFDEM-NERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFV 180
LI +++K GD ++AR++F+ M N+R+ V+W+ M++ +A A+ F+DM+E GF
Sbjct: 67 LISLYSK-CGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 125
Query: 181 ADQFTFSSVISGCAELGWLSVGK 249
+++ F++VI C+ + VG+
Sbjct: 126 PNEYCFAAVIRACSNANYAWVGE 148
>ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 111 bits (277), Expect = 7e-23
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +1
Query: 4 LIDMFAKGLGDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFVA 183
LIDMF KG GDL SA VFD+M ERN VTWTLMITR+AQ+G + DA++LF+DM +G+V
Sbjct: 219 LIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP 278
Query: 184 DQFTFSSVISGCAELGWLSVGK 249
D+FT+SSV+S C ELG L++GK
Sbjct: 279 DRFTYSSVLSACTELGLLALGK 300
Score = 60.5 bits (145), Expect = 1e-07
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 ALIDMFAKGLGD--LKSARMVFDEMNERNAVTWTLMITRYAQMG-YSSDAVELFVDMVEN 171
+L+DM+AK D + +R VF+ M E N ++WT +IT Y Q G +A+ELF M+
Sbjct: 320 SLVDMYAKCAADGSVDDSRKVFERMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISG 379
Query: 172 GFVADQFTFSSVISGCAEL 228
+ F+FSSV+ C L
Sbjct: 380 HIWPNHFSFSSVLKACGNL 398
Score = 57.0 bits (136), Expect = 2e-06
Identities = 28/83 (33%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +1
Query: 4 LIDMFAKGLGDLKSARMVFDEM-NERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFV 180
LI +++K GD ++AR++F+ M N+R+ V+W+ M++ +A A+ F+DM+E GF
Sbjct: 116 LISLYSK-CGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMELQAIWTFLDMLELGFY 174
Query: 181 ADQFTFSSVISGCAELGWLSVGK 249
+++ F++VI C+ VG+
Sbjct: 175 PNEYCFAAVIRACSNANHAWVGE 197
>emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 111 bits (277), Expect = 7e-23
Identities = 53/82 (64%), Positives = 67/82 (81%)
Frame = +1
Query: 4 LIDMFAKGLGDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFVA 183
LIDMF KG GDL SA VFD+M ERN VTWTLMITR+AQ+G + DA++LF+DM +G+V
Sbjct: 188 LIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP 247
Query: 184 DQFTFSSVISGCAELGWLSVGK 249
D+FT+SSV+S C ELG L++GK
Sbjct: 248 DRFTYSSVLSACTELGLLALGK 269
Score = 71.6 bits (174), Expect = 6e-11
Identities = 32/83 (38%), Positives = 60/83 (72%)
Frame = +1
Query: 1 ALIDMFAKGLGDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFV 180
ALI M+++ G++++A VF+EM +RN ++WT MIT +A+ G+++ A+E+F M+E G
Sbjct: 495 ALISMYSR-CGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTK 553
Query: 181 ADQFTFSSVISGCAELGWLSVGK 249
++ T+ +V+S C+ +G +S G+
Sbjct: 554 PNEITYVAVLSACSHVGMISEGQ 576
Score = 61.2 bits (147), Expect = 8e-08
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 ALIDMFAKGLGD--LKSARMVFDEMNERNAVTWTLMITRYAQMG-YSSDAVELFVDMVEN 171
+L+DM+AK D + +R VF++M E N ++WT +IT Y Q G +A+ELF M+
Sbjct: 289 SLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISG 348
Query: 172 GFVADQFTFSSVISGCAEL 228
+ F+FSSV+ C L
Sbjct: 349 HIRPNHFSFSSVLKACGNL 367
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/83 (33%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +1
Query: 4 LIDMFAKGLGDLKSARMVFDEM-NERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFV 180
LI +++K GD ++AR++F+ M N+R+ V+W+ M++ +A A+ F+DM+E GF
Sbjct: 85 LISLYSK-CGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY 143
Query: 181 ADQFTFSSVISGCAELGWLSVGK 249
+++ F++VI C+ + VG+
Sbjct: 144 PNEYCFAAVIRACSNANYAWVGE 166
>ref|XP_002522011.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223538815|gb|EEF40415.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 585
Score = 107 bits (268), Expect = 8e-22
Identities = 50/83 (60%), Positives = 65/83 (78%)
Frame = +1
Query: 1 ALIDMFAKGLGDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFV 180
ALIDM+AKG GD++ A VFD M+ERN VTWTLMI+R+ Q+GY DA++LF M+ +GF+
Sbjct: 218 ALIDMYAKGCGDVEGACKVFDNMSERNIVTWTLMISRFQQLGYYRDAIDLFNHMIFSGFM 277
Query: 181 ADQFTFSSVISGCAELGWLSVGK 249
D +T S V+S CAELG LS+GK
Sbjct: 278 PDNYTLSGVVSACAELGLLSLGK 300
Score = 70.9 bits (172), Expect = 1e-10
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +1
Query: 1 ALIDMFAKGL--GDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSS-DAVELFVDMVEN 171
+L+DM+AK G L +R VFD M N ++WT +IT Y Q G S +A ELF++M+E
Sbjct: 320 SLVDMYAKCAVDGSLDDSRKVFDRMTNHNVMSWTAIITGYVQNGRSDMEATELFLEMIEG 379
Query: 172 GFVADQFTFSSVISGCAELGWLSVGK 249
+ FTFSS++ CA L L +G+
Sbjct: 380 HVKPNHFTFSSILKACANLSDLHLGE 405
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/84 (34%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 ALIDMFAKGLGDLKSARMVFDEM-NERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGF 177
+LI +++K G+L SA +F M N+R+ V+W+ +I+ YA G DA+ +++DM+ +GF
Sbjct: 115 SLISLYSK-CGELNSANDIFISMGNKRDLVSWSALISCYATNGLEFDAIRVYIDMLVSGF 173
Query: 178 VADQFTFSSVISGCAELGWLSVGK 249
+++ +S+VI C+ S G+
Sbjct: 174 FPNEYCYSAVIKSCSNRENFSYGE 197
Score = 58.2 bits (139), Expect = 7e-07
Identities = 28/83 (33%), Positives = 55/83 (66%)
Frame = +1
Query: 1 ALIDMFAKGLGDLKSARMVFDEMNERNAVTWTLMITRYAQMGYSSDAVELFVDMVENGFV 180
+LI M+++ ++++AR FD + E+N V++ ++ YA+ S +A ELF ++ + GFV
Sbjct: 425 SLISMYSR-CDNMENARKAFDVLFEKNLVSYNTIVEAYAKGLNSEEAFELFNEIEDTGFV 483
Query: 181 ADQFTFSSVISGCAELGWLSVGK 249
+ FTF+S++SG + +G + G+
Sbjct: 484 VNAFTFASLLSGASSIGAIGKGE 506