BLASTX nr result
ID: Bupleurum21_contig00006699
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00006699
(525 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002320601.1| predicted protein [Populus trichocarpa] gi|2... 257 6e-67
ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containi... 249 1e-64
emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera] 249 1e-64
ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containi... 246 1e-63
ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containi... 238 4e-61
>ref|XP_002320601.1| predicted protein [Populus trichocarpa] gi|222861374|gb|EEE98916.1|
predicted protein [Populus trichocarpa]
Length = 629
Score = 257 bits (657), Expect = 6e-67
Identities = 123/177 (69%), Positives = 151/177 (85%), Gaps = 2/177 (1%)
Frame = -1
Query: 525 PQRSVVSWNSMISGYAQNGFFKEALDLFRQMQLGDVCPNYVTLVSILPAVSRLGALQLGK 346
P +SVVSWN MISG AQNG FKEA+++F MQLGDV PNYVTLVS+LPAVSRLGA++LGK
Sbjct: 217 PNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGK 276
Query: 345 WVHFYALKNEIEIDEVLGSALIDMYSNCGNIEKAIEVFDNLQH-KNVITWNAMIGGLGMH 169
WVH +A KNEIEID+VLGSALIDMYS CG+I+KA++VF+ +++ KN ITW+A+IGGL MH
Sbjct: 277 WVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMH 336
Query: 168 GRAKDAIDHFWRLKQVGIAPSHVTFIAALTACSHAGLVNEGRSIFNHM-HEVNLEPR 1
GRA+DA+DHFWR++Q G+ PS V +I L+ACSHAGLV EGRSI+ HM + V L PR
Sbjct: 337 GRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPR 393
Score = 75.9 bits (185), Expect = 3e-12
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 42/209 (20%)
Frame = -1
Query: 507 SWNSMISGYAQNG---FFK----EALDLFRQMQL-GDVCPNYVTLVSILPAVSRLGALQL 352
SWN++I A + F EAL F M G V PN T +L A ++L ++
Sbjct: 82 SWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEE 141
Query: 351 GKWVHFYALKNEIEIDE--------------------------------VLGSALIDMYS 268
GK +H + +K + DE VL + +ID Y
Sbjct: 142 GKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYV 201
Query: 267 NCGNIEKAIEVFDNLQHKNVITWNAMIGGLGMHGRAKDAIDHFWRLKQVGIAPSHVTFIA 88
G++ + E+FD++ +K+V++WN MI G +G K+AI+ F ++ + P++VT ++
Sbjct: 202 RMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVS 261
Query: 87 ALTACSHAGLVNEGR--SIFNHMHEVNLE 7
L A S G + G+ +F +E+ ++
Sbjct: 262 VLPAVSRLGAIELGKWVHLFAEKNEIEID 290
>ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 249 bits (637), Expect = 1e-64
Identities = 116/176 (65%), Positives = 149/176 (84%), Gaps = 1/176 (0%)
Frame = -1
Query: 525 PQRSVVSWNSMISGYAQNGFFKEALDLFRQMQLGDVCPNYVTLVSILPAVSRLGALQLGK 346
PQRSVVSWN MI+GYAQ+G FKEA+++FR+MQ+ +V PNYVTLVS+LPA+SRLGAL+LGK
Sbjct: 220 PQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGK 279
Query: 345 WVHFYALKNEIEIDEVLGSALIDMYSNCGNIEKAIEVFDNLQHKNVITWNAMIGGLGMHG 166
WVH YA++N I +D+VLGSALIDMY+ CG+IEKA++VF+ L +NV+TW+ +I GL MHG
Sbjct: 280 WVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHG 339
Query: 165 RAKDAIDHFWRLKQVGIAPSHVTFIAALTACSHAGLVNEGRSIFNHMHEVN-LEPR 1
RAKD +DHF +++ G+ PS VT+I L+ACSHAGLVNEGR F+HM V+ LEPR
Sbjct: 340 RAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPR 395
Score = 69.3 bits (168), Expect = 3e-10
Identities = 37/125 (29%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Frame = -1
Query: 525 PQRSVVSWNSMISGYAQNGFFKEALDLFRQMQLGDVCPNYVTLVSILPAVSRLGALQLGK 346
P+R+VV+W+++I+G A +G K+ LD F M+ V P+ VT + +L A S G + G+
Sbjct: 321 PKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGR 380
Query: 345 WVHFYALK-NEIEIDEVLGSALIDMYSNCGNIEKAIEVFDNLQHK-NVITWNAMIGGLGM 172
W + ++ + +E ++D+ G +E++ E+ N+ K + + W A++G M
Sbjct: 381 WFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKM 440
Query: 171 HGRAK 157
HG +
Sbjct: 441 HGNVE 445
Score = 68.9 bits (167), Expect = 4e-10
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 47/211 (22%)
Frame = -1
Query: 507 SWNSMISGYAQNGFFKEALDLFRQM-QLGDVCPNYVTLVSILPAVSRLGALQLGKWVHFY 331
S+N++I +++ +AL +F +M + V PN T S+ A R L+ G+ VH
Sbjct: 78 SYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGL 137
Query: 330 ALKNEIEIDEVLGSALIDMYSNCG------------------------------------ 259
A+K ++ DE + S ++ MY +CG
Sbjct: 138 AVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWN 197
Query: 258 ----------NIEKAIEVFDNLQHKNVITWNAMIGGLGMHGRAKDAIDHFWRLKQVGIAP 109
+E A +FD + ++V++WN MI G G K+A++ F ++ + P
Sbjct: 198 VMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPP 257
Query: 108 SHVTFIAALTACSHAGLVNEGRSIFNHMHEV 16
++VT ++ L A S G + G+ + H++ V
Sbjct: 258 NYVTLVSVLPAMSRLGALELGKWV--HLYAV 286
>emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 249 bits (637), Expect = 1e-64
Identities = 116/176 (65%), Positives = 149/176 (84%), Gaps = 1/176 (0%)
Frame = -1
Query: 525 PQRSVVSWNSMISGYAQNGFFKEALDLFRQMQLGDVCPNYVTLVSILPAVSRLGALQLGK 346
PQRSVVSWN MI+GYAQ+G FKEA+++FR+MQ+ +V PNYVTLVS+LPA+SRLGAL+LGK
Sbjct: 197 PQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGK 256
Query: 345 WVHFYALKNEIEIDEVLGSALIDMYSNCGNIEKAIEVFDNLQHKNVITWNAMIGGLGMHG 166
WVH YA++N I +D+VLGSALIDMY+ CG+IEKA++VF+ L +NV+TW+ +I GL MHG
Sbjct: 257 WVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHG 316
Query: 165 RAKDAIDHFWRLKQVGIAPSHVTFIAALTACSHAGLVNEGRSIFNHMHEVN-LEPR 1
RAKD +DHF +++ G+ PS VT+I L+ACSHAGLVNEGR F+HM V+ LEPR
Sbjct: 317 RAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPR 372
Score = 69.3 bits (168), Expect = 3e-10
Identities = 37/125 (29%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Frame = -1
Query: 525 PQRSVVSWNSMISGYAQNGFFKEALDLFRQMQLGDVCPNYVTLVSILPAVSRLGALQLGK 346
P+R+VV+W+++I+G A +G K+ LD F M+ V P+ VT + +L A S G + G+
Sbjct: 298 PKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGR 357
Query: 345 WVHFYALK-NEIEIDEVLGSALIDMYSNCGNIEKAIEVFDNLQHK-NVITWNAMIGGLGM 172
W + ++ + +E ++D+ G +E++ E+ N+ K + + W A++G M
Sbjct: 358 WFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKM 417
Query: 171 HGRAK 157
HG +
Sbjct: 418 HGNVE 422
Score = 68.9 bits (167), Expect = 4e-10
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 47/211 (22%)
Frame = -1
Query: 507 SWNSMISGYAQNGFFKEALDLFRQM-QLGDVCPNYVTLVSILPAVSRLGALQLGKWVHFY 331
S+N++I +++ +AL +F +M + V PN T S+ A R L+ G+ VH
Sbjct: 55 SYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGL 114
Query: 330 ALKNEIEIDEVLGSALIDMYSNCG------------------------------------ 259
A+K ++ DE + S ++ MY +CG
Sbjct: 115 AVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWN 174
Query: 258 ----------NIEKAIEVFDNLQHKNVITWNAMIGGLGMHGRAKDAIDHFWRLKQVGIAP 109
+E A +FD + ++V++WN MI G G K+A++ F ++ + P
Sbjct: 175 VMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPP 234
Query: 108 SHVTFIAALTACSHAGLVNEGRSIFNHMHEV 16
++VT ++ L A S G + G+ + H++ V
Sbjct: 235 NYVTLVSVLPAMSRLGALELGKWV--HLYAV 263
>ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 246 bits (629), Expect = 1e-63
Identities = 119/176 (67%), Positives = 148/176 (84%), Gaps = 2/176 (1%)
Frame = -1
Query: 522 QRSVVSWNSMISGYAQNGFFKEALDLF-RQMQLGDVCPNYVTLVSILPAVSRLGALQLGK 346
QRSVVSWN MISGYAQNGF+KEA+++F R MQ+GDV PN VTLVS+LPA+SRLG L+LGK
Sbjct: 227 QRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGK 286
Query: 345 WVHFYALKNEIEIDEVLGSALIDMYSNCGNIEKAIEVFDNLQHKNVITWNAMIGGLGMHG 166
WVH YA KN+I ID+VLGSAL+DMY+ CG+IEKAI+VF+ L NVITWNA+IGGL MHG
Sbjct: 287 WVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHG 346
Query: 165 RAKDAIDHFWRLKQVGIAPSHVTFIAALTACSHAGLVNEGRSIFNHM-HEVNLEPR 1
+A D ++ R+++ GI+PS VT+IA L+ACSHAGLV+EGRS FN M + V L+P+
Sbjct: 347 KANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPK 402
Score = 77.8 bits (190), Expect = 9e-13
Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 50/211 (23%)
Frame = -1
Query: 525 PQRSVVSWNSMISGYAQN-GFFKEALDLFRQM-QLGDVCPNYVTLVSILPAVSRLGALQL 352
P+R+ +WN++I A+ +AL +F QM V PN T S+L A + + L
Sbjct: 76 PERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAE 135
Query: 351 GKWVHFYALKNEIEIDE------------------------------------------- 301
GK VH LK + DE
Sbjct: 136 GKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGR 195
Query: 300 ----VLGSALIDMYSNCGNIEKAIEVFDNLQHKNVITWNAMIGGLGMHGRAKDAIDHFWR 133
VL + ++D Y+ GN++ A E+FD + ++V++WN MI G +G K+AI+ F R
Sbjct: 196 EFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHR 255
Query: 132 LKQVG-IAPSHVTFIAALTACSHAGLVNEGR 43
+ Q+G + P+ VT ++ L A S G++ G+
Sbjct: 256 MMQMGDVLPNRVTLVSVLPAISRLGVLELGK 286
Score = 59.3 bits (142), Expect = 3e-07
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Frame = -1
Query: 525 PQRSVVSWNSMISGYAQNGFFKEALDLFRQMQLGDVCPNYVTLVSILPAVSRLGALQLGK 346
PQ +V++WN++I G A +G + + +M+ + P+ VT ++IL A S G + G+
Sbjct: 328 PQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGR 387
Query: 345 -----WVHFYALKNEIEIDEVLGSALIDMYSNCGNIEKAIEVFDNLQHK-NVITWNAMIG 184
V+ LK +IE ++D+ G +E+A E+ N+ K + + W A++G
Sbjct: 388 SFFNDMVNSVGLKPKIE----HYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLG 443
Query: 183 GLGMHGRAK 157
MH K
Sbjct: 444 ASKMHKNIK 452
>ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 238 bits (607), Expect = 4e-61
Identities = 111/176 (63%), Positives = 145/176 (82%), Gaps = 1/176 (0%)
Frame = -1
Query: 525 PQRSVVSWNSMISGYAQNGFFKEALDLFRQMQLGDVCPNYVTLVSILPAVSRLGALQLGK 346
PQRSVVSWN MISGYAQNG F EA++LF++MQ ++ PNYVTLVS+LPA++R+GAL+LGK
Sbjct: 231 PQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGK 290
Query: 345 WVHFYALKNEIEIDEVLGSALIDMYSNCGNIEKAIEVFDNLQHKNVITWNAMIGGLGMHG 166
W+H YA KN+IEID+VLGSAL+DMYS CG+I++A++VF+ L +N ITW+A+IG MHG
Sbjct: 291 WIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHG 350
Query: 165 RAKDAIDHFWRLKQVGIAPSHVTFIAALTACSHAGLVNEGRSIFNHMHE-VNLEPR 1
RA+DAI HF + + G+ P+ V +I L+ACSHAGLV EGRS F+HM + V L+PR
Sbjct: 351 RAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPR 406
Score = 69.3 bits (168), Expect = 3e-10
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 51/214 (23%)
Frame = -1
Query: 525 PQRSVVSWNSMISGYAQNG---FFKEALDLFRQMQL-GDVCPNYVTLVSILPAVSRLGAL 358
P+ + WN+++ A+ EAL LF M G V PN T S+L A +R L
Sbjct: 79 PEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRL 138
Query: 357 QLGKWVHFYALKNEIEIDEVLGSALIDMYSNC---------------------------- 262
+ GK +H +K DE + S L+ MY C
Sbjct: 139 REGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKR 198
Query: 261 -------------------GNIEKAIEVFDNLQHKNVITWNAMIGGLGMHGRAKDAIDHF 139
G+I+ A +FD + ++V++WN MI G +G +AI+ F
Sbjct: 199 KQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLF 258
Query: 138 WRLKQVGIAPSHVTFIAALTACSHAGLVNEGRSI 37
++ I P++VT ++ L A + G + G+ I
Sbjct: 259 QEMQSSNIDPNYVTLVSVLPAIARIGALELGKWI 292