BLASTX nr result

ID: Bupleurum21_contig00006611 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00006611
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003533917.1| PREDICTED: MKI67 FHA domain-interacting nucl...   124   6e-27
gb|ABB87134.1| RNA binding protein-like protein [Solanum tuberosum]   124   1e-26
gb|AFW90620.1| RNA binding protein-like protein [Solanum tuberosum]   123   2e-26
ref|NP_001061793.1| Os08g0412200 [Oryza sativa Japonica Group] g...   115   4e-24
ref|XP_002530883.1| poly-A binding protein, putative [Ricinus co...   115   5e-24

>ref|XP_003533917.1| PREDICTED: MKI67 FHA domain-interacting nucleolar
           phosphoprotein-like [Glycine max]
          Length = 214

 Score =  124 bits (312), Expect = 6e-27
 Identities = 55/79 (69%), Positives = 68/79 (86%)
 Frame = +3

Query: 3   HPKLWRGISRWFVPKDWVQIERKRHDKDRTFDEHRKLVERIMKKDQKRRKRIEDAGIEYE 182
           HP++WRG +  + P D VQIERKRHDKDRT +EH+KLVE+++K DQKRRKRIE AGI+YE
Sbjct: 136 HPRIWRGFNYHYKPLDSVQIERKRHDKDRTLEEHKKLVEKVLKHDQKRRKRIEAAGIDYE 195

Query: 183 CPEVVGSKEPASKKIKFED 239
           CPE+VG+ +PA KKIKFED
Sbjct: 196 CPEIVGNIQPAPKKIKFED 214


>gb|ABB87134.1| RNA binding protein-like protein [Solanum tuberosum]
          Length = 217

 Score =  124 bits (310), Expect = 1e-26
 Identities = 52/78 (66%), Positives = 69/78 (88%)
 Frame = +3

Query: 3   HPKLWRGISRWFVPKDWVQIERKRHDKDRTFDEHRKLVERIMKKDQKRRKRIEDAGIEYE 182
           HP+LW+G++RW+ P DWV+IERKR DK+RT D+H+KLVE I+K+D+KRRKRIE AGI+YE
Sbjct: 138 HPRLWKGVNRWYKPLDWVKIERKRQDKERTLDDHKKLVEGILKRDKKRRKRIEAAGIDYE 197

Query: 183 CPEVVGSKEPASKKIKFE 236
           CPE+VGS + A KKI+F+
Sbjct: 198 CPEMVGSIQAAPKKIRFD 215


>gb|AFW90620.1| RNA binding protein-like protein [Solanum tuberosum]
          Length = 217

 Score =  123 bits (308), Expect = 2e-26
 Identities = 52/78 (66%), Positives = 68/78 (87%)
 Frame = +3

Query: 3   HPKLWRGISRWFVPKDWVQIERKRHDKDRTFDEHRKLVERIMKKDQKRRKRIEDAGIEYE 182
           HP+LW+G++RW+ P DWV+IERKR DK+RT D+H+KLVE I+K+D+KRRKRIE AGI+YE
Sbjct: 138 HPRLWKGVNRWYKPLDWVKIERKRQDKERTLDDHKKLVEGILKRDKKRRKRIEAAGIDYE 197

Query: 183 CPEVVGSKEPASKKIKFE 236
           CPE+VGS   A KKI+F+
Sbjct: 198 CPEMVGSIHAAPKKIRFD 215


>ref|NP_001061793.1| Os08g0412200 [Oryza sativa Japonica Group]
           gi|37806189|dbj|BAC99692.1| putative RNA binding protein
           [Oryza sativa Japonica Group]
           gi|113623762|dbj|BAF23707.1| Os08g0412200 [Oryza sativa
           Japonica Group] gi|125561534|gb|EAZ06982.1| hypothetical
           protein OsI_29226 [Oryza sativa Indica Group]
           gi|125603393|gb|EAZ42718.1| hypothetical protein
           OsJ_27289 [Oryza sativa Japonica Group]
           gi|215708821|dbj|BAG94090.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215737673|dbj|BAG96803.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215765362|dbj|BAG87059.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 214

 Score =  115 bits (288), Expect = 4e-24
 Identities = 49/79 (62%), Positives = 69/79 (87%)
 Frame = +3

Query: 3   HPKLWRGISRWFVPKDWVQIERKRHDKDRTFDEHRKLVERIMKKDQKRRKRIEDAGIEYE 182
           HPKLW+G+ R F+P D V IER+R +KD+T +EH+KLV++I+K+D+KRRKRI+ AGI+YE
Sbjct: 136 HPKLWKGVRRGFIPIDRVAIERRRLNKDKTIEEHKKLVDKIVKRDEKRRKRIKAAGIDYE 195

Query: 183 CPEVVGSKEPASKKIKFED 239
           CP ++GS +P++KKIKFED
Sbjct: 196 CPPLIGSVQPSAKKIKFED 214


>ref|XP_002530883.1| poly-A binding protein, putative [Ricinus communis]
           gi|223529536|gb|EEF31489.1| poly-A binding protein,
           putative [Ricinus communis]
          Length = 216

 Score =  115 bits (287), Expect = 5e-24
 Identities = 49/79 (62%), Positives = 67/79 (84%)
 Frame = +3

Query: 3   HPKLWRGISRWFVPKDWVQIERKRHDKDRTFDEHRKLVERIMKKDQKRRKRIEDAGIEYE 182
           HPKLW+G +  + P DWVQIERK  +KDRT +EH+KLVE+IMK+D+KR+KRIE AG++YE
Sbjct: 137 HPKLWKGFNYRYKPLDWVQIERKLQNKDRTLEEHKKLVEKIMKRDKKRQKRIEAAGLDYE 196

Query: 183 CPEVVGSKEPASKKIKFED 239
           CP VVG  +PA+K+I+F++
Sbjct: 197 CPAVVGEIQPAAKRIRFDE 215


Top