BLASTX nr result
ID: Bupleurum21_contig00006475
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00006475
(475 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003637458.1| Transcription elongation factor SPT6 [Medica... 59 3e-07
dbj|BAB12216.1| vasa homolog [Ciona savignyi] 57 2e-06
dbj|BAB12217.1| vasa homolog [Ciona savignyi] 57 2e-06
ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus ... 57 2e-06
ref|XP_002161873.2| PREDICTED: probable ATP-dependent RNA helica... 55 8e-06
>ref|XP_003637458.1| Transcription elongation factor SPT6 [Medicago truncatula]
gi|355503393|gb|AES84596.1| Transcription elongation
factor SPT6 [Medicago truncatula]
Length = 2159
Score = 59.3 bits (142), Expect = 3e-07
Identities = 28/37 (75%), Positives = 29/37 (78%), Gaps = 5/37 (13%)
Frame = +2
Query: 302 HMARDCRQ---GGGGRGN--SCYKCGETGHMARECNQ 397
HMARDC Q GGGGRG SCYKCGE+GHMAREC Q
Sbjct: 1498 HMARDCTQEGGGGGGRGGGGSCYKCGESGHMARECTQ 1534
Score = 57.8 bits (138), Expect = 9e-07
Identities = 27/37 (72%), Positives = 29/37 (78%), Gaps = 5/37 (13%)
Frame = +2
Query: 302 HMARDCRQ---GGGGRGN--SCYKCGETGHMARECNQ 397
HMAR+C Q GGGGRG SCYKCGE+GHMAREC Q
Sbjct: 1381 HMARECTQEGGGGGGRGGGGSCYKCGESGHMARECTQ 1417
Score = 57.8 bits (138), Expect = 9e-07
Identities = 27/37 (72%), Positives = 29/37 (78%), Gaps = 5/37 (13%)
Frame = +2
Query: 302 HMARDCRQ---GGGGRGN--SCYKCGETGHMARECNQ 397
HMAR+C Q GGGGRG SCYKCGE+GHMAREC Q
Sbjct: 1410 HMARECTQEGGGGGGRGGGGSCYKCGESGHMARECTQ 1446
Score = 57.8 bits (138), Expect = 9e-07
Identities = 27/37 (72%), Positives = 29/37 (78%), Gaps = 5/37 (13%)
Frame = +2
Query: 302 HMARDCRQ---GGGGRGN--SCYKCGETGHMARECNQ 397
HMAR+C Q GGGGRG SCYKCGE+GHMAREC Q
Sbjct: 1439 HMARECTQEGGGGGGRGGGGSCYKCGESGHMARECTQ 1475
Score = 57.8 bits (138), Expect = 9e-07
Identities = 28/48 (58%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Frame = +2
Query: 302 HMARDCRQ---GGGGRGN-SCYKCGETGHMARECNQXXXXXXXADSNG 433
HMAR+C Q GGGGRG +CYKCGE+GHMAREC Q S G
Sbjct: 1555 HMARECTQEGGGGGGRGGGACYKCGESGHMARECTQESGGGGWGGSGG 1602
Score = 57.0 bits (136), Expect = 2e-06
Identities = 26/36 (72%), Positives = 29/36 (80%), Gaps = 4/36 (11%)
Frame = +2
Query: 302 HMARDCRQ--GGGGRGN--SCYKCGETGHMARECNQ 397
HMAR+C Q GGGGRG +CYKCGE+GHMAREC Q
Sbjct: 1527 HMARECTQEGGGGGRGGGGTCYKCGESGHMARECTQ 1562
Score = 55.5 bits (132), Expect = 5e-06
Identities = 26/40 (65%), Positives = 29/40 (72%), Gaps = 8/40 (20%)
Frame = +2
Query: 302 HMARDCRQ---GGGGRGN-----SCYKCGETGHMARECNQ 397
HMAR+C Q GGGGRG +CYKCGE+GHMAREC Q
Sbjct: 1973 HMARECTQEGGGGGGRGGGRGGGACYKCGESGHMARECTQ 2012
Score = 55.5 bits (132), Expect = 5e-06
Identities = 26/40 (65%), Positives = 29/40 (72%), Gaps = 8/40 (20%)
Frame = +2
Query: 302 HMARDCRQ---GGGGRGN-----SCYKCGETGHMARECNQ 397
HMAR+C Q GGGGRG +CYKCGE+GHMAREC Q
Sbjct: 2042 HMARECTQEGGGGGGRGGGRGGGACYKCGESGHMARECTQ 2081
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/38 (65%), Positives = 29/38 (76%), Gaps = 6/38 (15%)
Frame = +2
Query: 302 HMARDCRQ--GGGGRGN----SCYKCGETGHMARECNQ 397
HMAR+C Q GGGGRG +CYKCGE+GHMAR+C Q
Sbjct: 1468 HMARECTQEGGGGGRGGGGGGTCYKCGESGHMARDCTQ 1505
>dbj|BAB12216.1| vasa homolog [Ciona savignyi]
Length = 688
Score = 56.6 bits (135), Expect = 2e-06
Identities = 23/33 (69%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Frame = +2
Query: 302 HMARDCRQGGGG-RGNSCYKCGETGHMARECNQ 397
HM+R+C QGGGG RG+ C+KCGE GHM+REC Q
Sbjct: 116 HMSRECPQGGGGGRGSGCFKCGEEGHMSRECPQ 148
Score = 55.5 bits (132), Expect = 5e-06
Identities = 22/31 (70%), Positives = 27/31 (87%), Gaps = 1/31 (3%)
Frame = +2
Query: 302 HMARDCRQGGGG-RGNSCYKCGETGHMAREC 391
HM+R+C QGGGG RG+ C+KCGE GHM+REC
Sbjct: 141 HMSRECPQGGGGGRGSGCFKCGEEGHMSREC 171
>dbj|BAB12217.1| vasa homolog [Ciona savignyi]
Length = 770
Score = 56.6 bits (135), Expect = 2e-06
Identities = 23/33 (69%), Positives = 28/33 (84%), Gaps = 1/33 (3%)
Frame = +2
Query: 302 HMARDCRQGGGG-RGNSCYKCGETGHMARECNQ 397
HM+R+C QGGGG RG+ C+KCGE GHM+REC Q
Sbjct: 198 HMSRECPQGGGGGRGSGCFKCGEEGHMSRECPQ 230
Score = 55.5 bits (132), Expect = 5e-06
Identities = 22/31 (70%), Positives = 27/31 (87%), Gaps = 1/31 (3%)
Frame = +2
Query: 302 HMARDCRQGGGG-RGNSCYKCGETGHMAREC 391
HM+R+C QGGGG RG+ C+KCGE GHM+REC
Sbjct: 223 HMSRECPQGGGGGRGSGCFKCGEEGHMSREC 253
Score = 55.1 bits (131), Expect = 6e-06
Identities = 22/31 (70%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
Frame = +2
Query: 302 HMARDCRQGGGG-RGNSCYKCGETGHMAREC 391
HM+R+C QGGGG RG C+KCGE GHM+REC
Sbjct: 116 HMSRECPQGGGGSRGKGCFKCGEEGHMSREC 146
>ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
Length = 679
Score = 56.6 bits (135), Expect = 2e-06
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +2
Query: 302 HMARDCRQGGGGRGNSCYKCGETGHMARECNQ 397
HM+R+C +GGGG G C+KCGE GHM+REC Q
Sbjct: 134 HMSRECPKGGGGGGRGCFKCGEDGHMSRECPQ 165
>ref|XP_002161873.2| PREDICTED: probable ATP-dependent RNA helicase DDX4 [Hydra
magnipapillata]
Length = 815
Score = 54.7 bits (130), Expect = 8e-06
Identities = 20/30 (66%), Positives = 25/30 (83%)
Frame = +2
Query: 302 HMARDCRQGGGGRGNSCYKCGETGHMAREC 391
HM+RDC QGG G G +C+KCG+ GHM+REC
Sbjct: 105 HMSRDCPQGGSGGGRACHKCGKEGHMSREC 134