BLASTX nr result
ID: Bupleurum21_contig00006459
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00006459
(1706 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 451 e-124
ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containi... 450 e-124
ref|XP_002301516.1| predicted protein [Populus trichocarpa] gi|2... 439 e-120
ref|XP_002515265.1| pentatricopeptide repeat-containing protein,... 435 e-119
emb|CBI36964.3| unnamed protein product [Vitis vinifera] 421 e-115
>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02370, mitochondrial-like [Vitis vinifera]
Length = 506
Score = 451 bits (1159), Expect = e-124
Identities = 239/485 (49%), Positives = 319/485 (65%), Gaps = 3/485 (0%)
Frame = +3
Query: 123 RFCTVVKDEHSDAPATTRISGKQNRKSLYNRLSALGMTGGSAMETINEYISEGNVTKKYE 302
R CT + A S + LY+RLSALG TGGS +T+NE+I EG + K+E
Sbjct: 19 RLCTAAAATEPEEVAVQAASRSVRQPRLYHRLSALGATGGSVADTLNEHIKEGKLIAKHE 78
Query: 303 LDTCIWQLRRYGQFLHALQVMEWMQTRHIKFQPTDHAKYLDLISRVRGINAAEDYFNGLP 482
L +CI QLR+Y QF HAL++M+WM+ R I F D+A LDL+S+ +G+ AE+YFN L
Sbjct: 79 LSSCIKQLRKYRQFQHALEIMDWMENRKIFFSYADYAVRLDLLSKTKGLATAEEYFNNLS 138
Query: 483 ESAKNKCTYGALLNCYCREKLTEKAQTLFKKMDELNIVS-SLTFNNLMSLHMRRGMPELV 659
SAKN TYG LLNCYC+EK+ EKA LF+KMDELN S SLTFNNLMSLHMR G PE+V
Sbjct: 139 PSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLMSLHMRLGKPEMV 198
Query: 660 PPLVQEMKERSFQLSVQTYNIWMTSYSDLNDIEGVERVFEEMKVNSGGEQYNWTTYSNLA 839
PPLV EMK+RS TYNI M SY+ LNDIEG ERV EE+K ++ +WTTYSNLA
Sbjct: 199 PPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIK-RENEDKLSWTTYSNLA 257
Query: 840 VAYVKGGLYEKAEIALKKLEAEINTGKSGDREPFHFLISLYCKTSNLDEVYRIWERLKSS 1019
YV L+EKAE+ALKKLE E+ DR +HFLISLY +NL EV R+W LKS+
Sbjct: 258 AVYVNARLFEKAELALKKLEEEMG---FHDRLAYHFLISLYAGINNLSEVNRVWNSLKSA 314
Query: 1020 FEITTNASTLIMVQSLAKLDDIDGFKKIFEEWQSTCSYYDSRLAKVAIGLYVKHAMIKEA 1199
F T N S IM+Q+LA L+D+DG K FEEW+S+C +D RLA VA+ ++ MIK+A
Sbjct: 315 FPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFLGWDMIKDA 374
Query: 1200 ENVFDNSLKRCRSFSYQHCKPLYLHYLETNQLELALRCLEVGISGLKEN-WYPSDGIAKR 1376
E++ ++KR Y H+L+ +++ AL+ +E S +K N W P+
Sbjct: 375 ESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKNNEWQPAPERVLA 434
Query: 1377 FMEYFKKKCNVNSAQKFYAILEMVDGFHSQAYRLLLETYVAAGKTSSEIRCKIMNDNY-I 1553
F++YF+++ +V A+KF IL+ + G S AY+LLL+T VAAG+T E+R ++ D+ +
Sbjct: 435 FLKYFEEEKDVEGAEKFCKILKNISGLDSNAYQLLLQTXVAAGRTEPEMRKRMKEDDIEV 494
Query: 1554 DSSEV 1568
DS ++
Sbjct: 495 DSKDL 499
>ref|XP_004146883.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial-like [Cucumis sativus]
gi|449518825|ref|XP_004166436.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g02370,
mitochondrial-like [Cucumis sativus]
Length = 474
Score = 450 bits (1157), Expect = e-124
Identities = 230/464 (49%), Positives = 318/464 (68%), Gaps = 1/464 (0%)
Frame = +3
Query: 180 SGKQNRKSLYNRLSALGMTGGSAMETINEYISEGNVTKKYELDTCIWQLRRYGQFLHALQ 359
S N++ LY RLSALG TGGS +TIN++I EGN+ KKYEL+ CI +LR+Y ++ H LQ
Sbjct: 3 SPANNQRGLYPRLSALGATGGSVAKTINQFIMEGNIVKKYELEKCIKELRKYRRYHHCLQ 62
Query: 360 VMEWMQTRHIKFQPTDHAKYLDLISRVRGINAAEDYFNGLPESAKNKCTYGALLNCYCRE 539
+MEWM+TR I + TD+A LDLIS+V G+ AAE YF LP SAKN+CTYGALLNCYC+E
Sbjct: 63 IMEWMETRKINYSFTDYALRLDLISKVNGVTAAEKYFYDLPPSAKNRCTYGALLNCYCKE 122
Query: 540 KLTEKAQTLFKKMDELNIVSSLTFNNLMSLHMRRGMPELVPPLVQEMKERSFQLSVQTYN 719
+ EKA TLFKKMDEL I +SL+FNNLM+++MR PE VPPL+ EMK+R F L+ TYN
Sbjct: 123 MMEEKALTLFKKMDELKISTSLSFNNLMTMYMRMDHPEKVPPLIGEMKQRGFYLTTFTYN 182
Query: 720 IWMTSYSDLNDIEGVERVFEEMKVNSGGEQYNWTTYSNLAVAYVKGGLYEKAEIALKKLE 899
+WM S + LNDI VE + EEMK+ +++WTTYSNLA YVK G +EKAE+ALKKLE
Sbjct: 183 VWMNSCASLNDIGKVEEILEEMKMED-RNKFDWTTYSNLASFYVKAGQFEKAELALKKLE 241
Query: 900 AEINTGKSGDREPFHFLISLYCKTSNLDEVYRIWERLKSSFEITTNASTLIMVQSLAKLD 1079
E+ + K+ DR +H LISLY TSNL EV RIW LKS + TN S L+M+Q+L KL
Sbjct: 242 EEMKSDKN-DRLVYHCLISLYASTSNLSEVNRIWNALKSVYSTMTNISYLVMLQALRKLK 300
Query: 1080 DIDGFKKIFEEWQSTCSYYDSRLAKVAIGLYVKHAMIKEAENVFDNSLKRCRSFSYQHCK 1259
DI+G K+ ++EW+S C +D R+ IG Y++ M ++A +F+++ KR + + +
Sbjct: 301 DIEGLKRTYKEWESNCRNFDLRIVNDIIGAYLQQDMYEDAAMIFEDATKRSKGPFSRARE 360
Query: 1260 PLYLHYLETNQLELALRCLEVGISGLKE-NWYPSDGIAKRFMEYFKKKCNVNSAQKFYAI 1436
+++L+ Q++ A LE +S KE W+PS F+ YF+++ +V A+ F I
Sbjct: 361 MFMVYFLKLKQVDSAFSHLESALSESKEKEWHPSLATTTAFLNYFEEEKDVEGAEDFARI 420
Query: 1437 LEMVDGFHSQAYRLLLETYVAAGKTSSEIRCKIMNDNYIDSSEV 1568
L+ + + Y LLL+TYVAAGK + ++R ++ D+ SSE+
Sbjct: 421 LKRLKCLDASGYHLLLKTYVAAGKLAPDMRKRLKEDDIEISSEL 464
>ref|XP_002301516.1| predicted protein [Populus trichocarpa] gi|222843242|gb|EEE80789.1|
predicted protein [Populus trichocarpa]
Length = 476
Score = 439 bits (1128), Expect = e-120
Identities = 225/460 (48%), Positives = 308/460 (66%), Gaps = 12/460 (2%)
Frame = +3
Query: 204 LYNRLSALGMTGGSAMETINEYISEGNVTKKYELDTCIWQLRRYGQFLHALQVMEWMQTR 383
+Y RLS LG +GGS +T+NE I EG T K L TCI +LR+YG+F HA++VMEWMQ R
Sbjct: 1 MYRRLSELGASGGSVSKTLNELILEGGKTSKINLTTCIKKLRKYGRFDHAIEVMEWMQKR 60
Query: 384 HIKFQPTDHAKYLDLISRVRGINAAEDYFNGLPESAKNKCTYGALLNCYCREKLTEKAQT 563
+ F DHA YLDL ++ +GI AAE+YF+ LP S +N TY LLNCYC+E ++EKA T
Sbjct: 61 KMNFSHVDHAVYLDLTAKTKGIAAAENYFDNLPPSVQNHVTYSTLLNCYCKELMSEKALT 120
Query: 564 LFKKMDELNIVS-SLTFNNLMSLHMRRGMPELVPPLVQEMKERSFQLSVQTYNIWMTSYS 740
LF+KMD++ ++S S+ FNNLM+LHMR G PE V +VQEMK+R TYNIWM SY
Sbjct: 121 LFEKMDKMKLLSTSMPFNNLMTLHMRLGQPEKVLGIVQEMKQRGVSPGTFTYNIWMQSYG 180
Query: 741 DLNDIEGVERVFEEMKVNSGGEQYNWTTYSNLAVAYVKGGLYEKAEIALKKLEAEINTGK 920
LND EGV+RV +EMK + G E ++WTTYSNLA YVK GL++KAE AL+KLE +I G+
Sbjct: 181 CLNDFEGVQRVLDEMKTD-GKENFSWTTYSNLATIYVKAGLFDKAESALRKLEEQIECGR 239
Query: 921 ----------SGDREPFHFLISLYCKTSNLDEVYRIWERLKSSFEITTNASTLIMVQSLA 1070
DRE +HFLISLY TSNL EV+R+W LKSSF TTN S L ++Q+LA
Sbjct: 240 DCDFQKKRRHDADREAYHFLISLYAGTSNLSEVHRVWNSLKSSFRTTTNISYLNVLQALA 299
Query: 1071 KLDDIDGFKKIFEEWQSTCSYYDSRLAKVAIGLYVKHAMIKEAENVFDNSLKRCRSFSYQ 1250
KL D++G K F+EW+S+C YD LA VAI ++H M +EA ++FD +LKR + ++
Sbjct: 300 KLKDVEGILKCFKEWESSCHSYDMGLANVAIRACLEHDMYEEAASIFDEALKRTKGLFFK 359
Query: 1251 HCKPLYLHYLETNQLELALRCLEVGISGLKE-NWYPSDGIAKRFMEYFKKKCNVNSAQKF 1427
+ + +L+ +Q +LAL+ ++ S KE W P F+ YF+ +V+ A++
Sbjct: 360 AREMFMVFFLKNHQPDLALKHMKAAFSEAKEIEWQPDQKTVSAFLNYFEDGKDVDGAERL 419
Query: 1428 YAILEMVDGFHSQAYRLLLETYVAAGKTSSEIRCKIMNDN 1547
I + ++ +S AY LLL+TY AAG+ + E+R ++ DN
Sbjct: 420 CKIWKQINRLNSNAYILLLKTYTAAGRLAPEMRQRLEEDN 459
>ref|XP_002515265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545745|gb|EEF47249.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 504
Score = 435 bits (1119), Expect = e-119
Identities = 238/493 (48%), Positives = 323/493 (65%), Gaps = 3/493 (0%)
Frame = +3
Query: 99 TSSPPSIARFCTVVKDEHSDAPATTRISGKQNRKSLYNRLSALGMTGGSAMETINEYISE 278
T+S PS RF T E + PA +S +Q+ K LY++LSALG TGGS T+NE+I E
Sbjct: 11 TASCPSRQRFSTA---EAAVPPAV--VSPRQSEK-LYHKLSALGATGGSVSRTLNEHIME 64
Query: 279 GNVTKKYELDTCIWQLRRYGQFLHALQVMEWMQTRHIKFQPTDHAKYLDLISRVRGINAA 458
G K EL CI +LR+Y +F HA ++MEWM+ R + F D A LDLI + RGI AA
Sbjct: 65 GKTITKIELSRCIRELRKYRRFDHAFEIMEWMEKRKMNFSYADRAIRLDLIGKARGIAAA 124
Query: 459 EDYFNGLPESAKNKCT-YGALLNCYCREKLTEKAQTLFKKMDELNIV-SSLTFNNLMSLH 632
EDYFNGL SAKN T YGALLNCYC+E +++KA LF++MDE + SSL FNNLMS++
Sbjct: 125 EDYFNGLSPSAKNHHTSYGALLNCYCKELMSDKALALFQEMDEKKFLYSSLPFNNLMSMY 184
Query: 633 MRRGMPELVPPLVQEMKERSFQLSVQTYNIWMTSYSDLNDIEGVERVFEEMKVNSGGEQY 812
MR G PE VPPLV EMK+R TYNIWM SY LND +GV+RV E+ + G +
Sbjct: 185 MRLGQPEKVPPLVDEMKKRKVSPCSFTYNIWMQSYGCLNDFQGVDRVLREIVNDGGKDNL 244
Query: 813 NWTTYSNLAVAYVKGGLYEKAEIALKKLEAEINTGKSGDREPFHFLISLYCKTSNLDEVY 992
WTTYSNLA Y+K G++EKAE ALKKLEA + +RE +HFLIS+Y T N +EV
Sbjct: 245 QWTTYSNLATIYLKAGIFEKAESALKKLEAIMGFR---NREAYHFLISIYAGTGNSNEVN 301
Query: 993 RIWERLKSSFEITTNASTLIMVQSLAKLDDIDGFKKIFEEWQSTCSYYDSRLAKVAIGLY 1172
R+W LKSSF + N S L+M+Q+LAKL D++G K F EW+S C+ YD R+A VAI ++
Sbjct: 302 RVWGLLKSSFNMINNLSYLVMLQALAKLKDVEGVAKCFREWESGCTNYDMRIANVAIRVF 361
Query: 1173 VKHAMIKEAENVFDNSLKRCRSFSYQHCKPLYLHYLETNQLELALRCLEVGIS-GLKENW 1349
++H M +EAE +FD++LKR R ++ + L +L+ +QL+LAL+ + S K W
Sbjct: 362 LQHDMYEEAELIFDDALKRTRGPFFKARERFMLFFLKIHQLDLALKHMRAAFSESEKHEW 421
Query: 1350 YPSDGIAKRFMEYFKKKCNVNSAQKFYAILEMVDGFHSQAYRLLLETYVAAGKTSSEIRC 1529
P + +YF+ + +V+ A+K IL+ ++ +S Y LLL+TY+AAGK + E+R
Sbjct: 422 KPLQETVNAYFDYFRTEKDVDGAEKLSKILKHINCLNSSVYSLLLKTYIAAGKLAPEMRQ 481
Query: 1530 KIMNDNYIDSSEV 1568
++ DN S E+
Sbjct: 482 RLEEDNIEISDEL 494
>emb|CBI36964.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 421 bits (1082), Expect = e-115
Identities = 222/446 (49%), Positives = 292/446 (65%), Gaps = 2/446 (0%)
Frame = +3
Query: 123 RFCTVVKDEHSDAPATTRISGKQNRKSLYNRLSALGMTGGSAMETINEYISEGNVTKKYE 302
R CT + A S + LY+RLSALG TGGS +T+NE+I EG + K+E
Sbjct: 58 RLCTAAAATEPEEVAVQAASRSVRQPRLYHRLSALGATGGSVADTLNEHIKEGKLIAKHE 117
Query: 303 LDTCIWQLRRYGQFLHALQVMEWMQTRHIKFQPTDHAKYLDLISRVRGINAAEDYFNGLP 482
L +CI QLR+Y QF HAL++M+WM+ R I F D+A LDL+S+ +G+ AE+YFN L
Sbjct: 118 LSSCIKQLRKYRQFQHALEIMDWMENRKIFFSYADYAVRLDLLSKTKGLATAEEYFNNLS 177
Query: 483 ESAKNKCTYGALLNCYCREKLTEKAQTLFKKMDELNIVS-SLTFNNLMSLHMRRGMPELV 659
SAKN TYG LLNCYC+EK+ EKA LF+KMDELN S SLTFNNLMSLHMR G PE+V
Sbjct: 178 PSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTFNNLMSLHMRLGKPEMV 237
Query: 660 PPLVQEMKERSFQLSVQTYNIWMTSYSDLNDIEGVERVFEEMKVNSGGEQYNWTTYSNLA 839
PPLV EMK+RS TYNI M SY+ LNDIEG ERV EE+K ++ +WTTYSNLA
Sbjct: 238 PPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIK-RENEDKLSWTTYSNLA 296
Query: 840 VAYVKGGLYEKAEIALKKLEAEINTGKSGDREPFHFLISLYCKTSNLDEVYRIWERLKSS 1019
YV L+EKAE+ALKKLE E+ DR +HFLISLY +NL EV R+W LKS+
Sbjct: 297 AVYVNARLFEKAELALKKLEEEMG---FHDRLAYHFLISLYAGINNLSEVNRVWNSLKSA 353
Query: 1020 FEITTNASTLIMVQSLAKLDDIDGFKKIFEEWQSTCSYYDSRLAKVAIGLYVKHAMIKEA 1199
F T N S IM+Q+LA L+D+DG K FEEW+S+C +D RLA VA+ ++ MIK+A
Sbjct: 354 FPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAVRAFLGWDMIKDA 413
Query: 1200 ENVFDNSLKRCRSFSYQHCKPLYLHYLETNQLELALRCLEVGISGLKEN-WYPSDGIAKR 1376
E++ ++KR Y H+L+ +++ AL+ +E S +K N W P+
Sbjct: 414 ESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKNNEWQPAPERVLA 473
Query: 1377 FMEYFKKKCNVNSAQKFYAILEMVDG 1454
F++YF+++ +V A+KF IL+ + G
Sbjct: 474 FLKYFEEEKDVEGAEKFCKILKNISG 499