BLASTX nr result

ID: Bupleurum21_contig00006422 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00006422
         (1081 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003615322.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    86   2e-14
ref|XP_003635760.1| F-box family-3 [Medicago truncatula] gi|3555...    82   2e-13
ref|XP_003598915.1| F-box family-9 [Medicago truncatula] gi|3554...    82   2e-13
ref|XP_003533199.1| PREDICTED: F-box protein At1g60400-like [Gly...    81   5e-13
ref|XP_003598149.1| F-box family-3 [Medicago truncatula] gi|3554...    80   7e-13

>ref|XP_003615322.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
            gi|355516657|gb|AES98280.1| F-box/FBD/LRR-repeat protein
            [Medicago truncatula]
          Length = 359

 Score = 85.9 bits (211), Expect = 2e-14
 Identities = 88/308 (28%), Positives = 135/308 (43%), Gaps = 8/308 (2%)
 Frame = +3

Query: 138  RISKLSDDVIHQIMLFLDDARLAVQTSTLSKRWKHVWKTLPFLSFHGYN-QHYKDKLNKF 314
            R+S+L D +I QI+ FL  A+ AVQT  LSKR+ ++WK LP L     + +H KD     
Sbjct: 10   RLSELPDHLILQILSFLF-AKQAVQTCILSKRFDNLWKRLPTLRLTSSSFKHLKD----- 63

Query: 315  IYSKFINYVFSSRNHQCRIHKLDLCPRNGLHTSCLIRYVKYAISHDVQSLNVR---SDRY 485
             ++KF++ + S R+H   +H L     + +    L R +KYA+SH+V+ + VR     ++
Sbjct: 64   -FTKFVSKILSLRDHSTSLHSLTFHRHSLVEPHLLKRVLKYAVSHNVEQIYVRVKCDIQH 122

Query: 486  CSLSMFNSNSLKELKLTMPLENNDVKEPV----CWSLPNLTNLYLELDSFSCTFRGKFPQ 653
               ++F+S++L  LKL +       K  +      +LP+LT L L L +FS    G    
Sbjct: 123  FPPTLFSSHTLTSLKLALVHPKIYAKRALFPTNSINLPSLTTLCLHLFAFSVNNDG---- 178

Query: 654  XXXXXXXXXXXXXXIYCTLPEFFSLPSLTKLYLKYCTLPKNGWDFPALLTLELDKVDCRK 833
                            C  P  FS+                   F  L TL +DK +   
Sbjct: 179  ----------------CAEP--FSI-------------------FNKLNTLVIDKCEVED 201

Query: 834  NMGEYFLSLASLQNLAIYYREWSTLDCVISGFQLVNLMISAHGHTANDSQRIIVVSAPKL 1013
            +    ++S A+L  L I  R++   DC+                        I +S P L
Sbjct: 202  SQ-NLWISSATLVKLTIVTRDYPPDDCI-----------------------EIELSTPNL 237

Query: 1014 CNFTAIGS 1037
            C FT IGS
Sbjct: 238  CTFTFIGS 245


>ref|XP_003635760.1| F-box family-3 [Medicago truncatula] gi|355501695|gb|AES82898.1|
           F-box family-3 [Medicago truncatula]
          Length = 366

 Score = 82.4 bits (202), Expect = 2e-13
 Identities = 62/176 (35%), Positives = 98/176 (55%), Gaps = 9/176 (5%)
 Frame = +3

Query: 141 ISKLSDDVIHQIMLFLDDARLAVQTSTLSKRWKHVWKTLPFLSFHGYNQHYKDKLNKFIY 320
           IS L+D V+  I+ FL+ A  AVQT  LSKRW  +WK+L  ++        + +     +
Sbjct: 16  ISDLTDSVLLHILSFLN-AIQAVQTCVLSKRWIILWKSLSTITLRSSYSRPRKR-----F 69

Query: 321 SKFINYVFSSRNHQCRIHKLDLCPRNGLHTSCLIRYVKYAISHDVQSLNVRSDRYCSLS- 497
            +F++ +FS R+    IH LDL  R+ +  S L + ++YA+SH+VQ L  R D  C +  
Sbjct: 70  DEFVSRIFSLRDGSTAIHTLDLYRRHSMKHSLLRKIIEYAVSHNVQHL--RIDYTCHIEN 127

Query: 498 ----MFNSNSLKELKLTMPLENNDV-KEPV---CWSLPNLTNLYLELDSFSCTFRG 641
               +F+ ++LK L L+  L N  V  +PV     +LP+LTNL L+  +F+ +  G
Sbjct: 128 FPSCLFSCHTLKSLNLSGFLYNTFVHHKPVFRNSLNLPSLTNLSLKYFAFARSDNG 183


>ref|XP_003598915.1| F-box family-9 [Medicago truncatula] gi|355487963|gb|AES69166.1|
           F-box family-9 [Medicago truncatula]
          Length = 383

 Score = 82.0 bits (201), Expect = 2e-13
 Identities = 61/163 (37%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
 Frame = +3

Query: 138 RISKLSDDVIHQIMLFLDDARLAVQTSTLSKRWKHVWKTLPFLSFHGYNQHYKDKLNKFI 317
           R+S L + ++  I+ FLD    AVQT  LSK WK++WK LP L      +H+K     F 
Sbjct: 16  RLSVLPECILLHILSFLDPKE-AVQTCILSKSWKNLWKYLPILKLTF--RHFKKNPKGF- 71

Query: 318 YSKFINYVFSSRNHQCRIHKLDLCPRNGLHTSCLIRYVKYAISHDVQSLNVRSDRYCS-- 491
            +KF++ + S RN    +H LD   R  L    L R +KYA SH+VQ L V  D  C+  
Sbjct: 72  -TKFVSQILSLRNDSTALHTLDFHCRGRLELHILERILKYAFSHNVQRLGV--DLSCNIP 128

Query: 492 ---LSMFNSNSLKELKLTMPLENNDVKEPVCWSLPNLTNLYLE 611
              LS F+ ++L  L L +         P    LP LTNL L+
Sbjct: 129 QFPLSFFSCHTLTSLDLRIHFFTLTNLFPDSLDLPALTNLSLQ 171


>ref|XP_003533199.1| PREDICTED: F-box protein At1g60400-like [Glycine max]
          Length = 392

 Score = 80.9 bits (198), Expect = 5e-13
 Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 6/164 (3%)
 Frame = +3

Query: 138 RISKLSDDVIHQIMLFLDDARLAVQTSTLSKRWKHVWKTLPFLSFHGYNQHYKDKLNKFI 317
           R+S L D V+  IM F+   + AVQT  LSKRWK +WK L  L+ H       D  +   
Sbjct: 40  RLSDLPDFVLLHIMKFMS-MKHAVQTCVLSKRWKELWKRLTNLALHS-----SDFADLAH 93

Query: 318 YSKFINYVFSSRNHQCRIHKLDLCPRNGLHTSCLIRYVKYAISHDVQ------SLNVRSD 479
           +SKF+++V S+R+    +H LDL  +  +    L   + YA+SHDVQ      +LNV+  
Sbjct: 94  FSKFLSWVLSNRDSSISLHSLDLRRKGCIDHELLDMIMGYAVSHDVQQLAIEVNLNVKFG 153

Query: 480 RYCSLSMFNSNSLKELKLTMPLENNDVKEPVCWSLPNLTNLYLE 611
                S+F+  SL  LKL++       + P    LP L +L+LE
Sbjct: 154 FKLHPSIFSCKSLTFLKLSIWAVPWMTELPSSLPLPALKSLHLE 197


>ref|XP_003598149.1| F-box family-3 [Medicago truncatula] gi|355487197|gb|AES68400.1|
           F-box family-3 [Medicago truncatula]
          Length = 376

 Score = 80.5 bits (197), Expect = 7e-13
 Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 14/178 (7%)
 Frame = +3

Query: 138 RISKLSDDVIHQIMLFLDDARLAVQTSTLSKRWKHVWKTLPFLSFHGYNQHYKDKLNKFI 317
           R+S+LSD+++H I+ FL+ A+ AVQT  LSKRW ++WKTL  L+      H+  + +   
Sbjct: 12  RMSELSDNLLHHILSFLN-AKEAVQTCILSKRWINLWKTLSTLTLS--VDHFSTEES--- 65

Query: 318 YSKFINYVFSSRNHQCRIHKL--DLCPRNGLHTSCLIRYVKYAISHDVQSLNV--RSDRY 485
           + +FI+ + S R+H   IH L       + L     ++ ++YA SH+VQ   +   + ++
Sbjct: 66  FEQFISMLLSLRDHSTDIHSLVFHFQWTHVLSRDLYLKTIEYAFSHNVQHFQILYTAVKH 125

Query: 486 CSLSMFNSNSLKELKLTMPLENNDVKEPVCW----------SLPNLTNLYLELDSFSC 629
                F+S++L  L LT      D+  P  W          +LP LT LYL+  SFSC
Sbjct: 126 LPSCFFSSHTLTSLNLT----GKDLMVPSGWYQIFPSSHSFNLPALTTLYLKHLSFSC 179


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