BLASTX nr result
ID: Bupleurum21_contig00006067
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00006067
(1192 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g... 137 4e-30
ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus ... 125 3e-26
ref|XP_002532715.1| conserved hypothetical protein [Ricinus comm... 117 7e-24
ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|2... 115 2e-23
ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|2... 115 3e-23
>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
gi|222854763|gb|EEE92310.1| f-box family protein
[Populus trichocarpa]
Length = 396
Score = 137 bits (346), Expect = 4e-30
Identities = 72/186 (38%), Positives = 111/186 (59%), Gaps = 3/186 (1%)
Frame = +1
Query: 1 KTHSWKRLQNIPYQFQYFGVWGMFMGGALHWIA---VKSQGCPSILAVDLGVENHREIQM 171
+ SW+R+ ++PY Y G G+F GALHW+ +S ++A+DLGVE++RE+
Sbjct: 186 RKQSWRRIGDMPYCVHYPGANGVFANGALHWVVGENPESNVANIVVALDLGVEDYREVLQ 245
Query: 172 PKLQTKNVHQLSIITFEKSLCILEYLFSVRLNVWVMKDYGVGNSWCKLFSVEQPKAIRSF 351
P+ + KN + + + LC L R++VW+MK+YGV SW KLFSV Q + I
Sbjct: 246 PEYKDKNFY-IDLGVLRGCLCFLANFLGERVDVWMMKEYGVKESWTKLFSVAQYEVIGFL 304
Query: 352 VTITPLAYSKSRKDVLLEVDNKMVMWYNPKKKKARTAKIDNLPSIFDLEVYTESLVPVDY 531
++ PLAYSKS +VL+E DN + WY+ K+K+ + +I +P F+ + + ESL+ V
Sbjct: 305 RSLKPLAYSKSGDEVLIEHDNLDLCWYDLKRKQVKN-RIPGIPYSFEADTFVESLISVSP 363
Query: 532 NMSSDG 549
N DG
Sbjct: 364 NRHLDG 369
Score = 124 bits (312), Expect = 4e-26
Identities = 75/186 (40%), Positives = 106/186 (56%), Gaps = 10/186 (5%)
Frame = +1
Query: 664 DLISEILSRLPVKTLLQYRCVSKPWCSLIDSPRFVKAHLKRSIECNTNTGLIIR-GDNFH 840
++I+EIL RLP K LL R VSKPWC+LID P FVK HLK S++ ++N +I+R + H
Sbjct: 7 EMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYIILRTTSHVH 66
Query: 841 LVDFDS----LEHATPVEIDDPLRLRLYGCSIVSSVDGLHCLFNPRPDIFIWNPATRKCR 1008
+DF+ + T E++ PL +G ++ SV+GL C+ N DI +WNP+TRK R
Sbjct: 67 YMDFEQNLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCISNVVDDIAVWNPSTRKHR 126
Query: 1009 HLPKLPADFNR--PXXXXXXXXXXXXYDASNDDYKVMRIQT---DDPVLAGSKVIVYSLK 1173
+P LP + R YD+ DDYK++RI S+V VYSL+
Sbjct: 127 VVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRSFESEVKVYSLR 186
Query: 1174 THSWKR 1191
SW+R
Sbjct: 187 KQSWRR 192
>ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 389
Score = 125 bits (313), Expect = 3e-26
Identities = 67/181 (37%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Frame = +1
Query: 1 KTHSWKRLQNIPYQFQYFGVWGMFMGGALHWIAVK---SQGCPSILAVDLGVENHREIQM 171
+ +SW+R+ ++PY Y G G++ GALHW+ + S +I+A+DLGVE++ +
Sbjct: 179 RKNSWRRIADMPYCVLYPGENGIYANGALHWLVSQDPDSTVADTIVALDLGVEDYHVVPK 238
Query: 172 PKLQTKNVHQLSIITFEKSLCILEYLFSVRLNVWVMKDYGVGNSWCKLFSVEQPKAIRSF 351
P+ N + + + + L +L Y S R++VWVM++Y V SW KLFSV + + I
Sbjct: 239 PEFVDMNCN-MGVGVLQGCLSLLAYARSERVDVWVMEEYMVKESWSKLFSVARLEVIGIL 297
Query: 352 VTITPLAYSKSRKDVLLEVDNKMVMWYNPKKKKARTAKIDNLPSIFDLEVYTESLVPVDY 531
++ PLAYSKS +VL+E DN + WY+ K+K+ I +P F+ E+ SLVP++
Sbjct: 298 RSLKPLAYSKSGNEVLIEHDNVNLFWYDLKRKEVVNVWIQGVPITFEAEICVGSLVPLNA 357
Query: 532 N 534
N
Sbjct: 358 N 358
Score = 120 bits (302), Expect = 5e-25
Identities = 73/185 (39%), Positives = 102/185 (55%), Gaps = 5/185 (2%)
Frame = +1
Query: 652 HLTEDLISEILSRLPVKTLLQYRCVSKPWCSLIDSPRFVKAHLKRSIECNTNTGLIIRGD 831
+L ++I+EIL RL K LL RCVSK W +LIDSP F+ HL SIE N +I++
Sbjct: 3 NLPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILKSS 62
Query: 832 NFHLVDFDSLEHATPVEIDDPLRLRLYGCSIVSSVDGLHCLFNPRPDIFIWNPATRKCRH 1011
+ + FD L++ P +D PL +G I+ S +GL C+ N DI +WNP+ R R
Sbjct: 63 ELYSLSFDLLDNIQP--LDHPLMCYNHGVKILGSCNGLLCICNIVDDIALWNPSIRAHRV 120
Query: 1012 LPKLPADFNR--PXXXXXXXXXXXXYDASNDDYKVMRIQT---DDPVLAGSKVIVYSLKT 1176
+P LP + R YD SNDDYK++RI D S+V V+SL+
Sbjct: 121 VPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRKSFESEVKVFSLRK 180
Query: 1177 HSWKR 1191
+SW+R
Sbjct: 181 NSWRR 185
>ref|XP_002532715.1| conserved hypothetical protein [Ricinus communis]
gi|223527542|gb|EEF29664.1| conserved hypothetical
protein [Ricinus communis]
Length = 395
Score = 117 bits (292), Expect = 7e-24
Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 10/189 (5%)
Frame = +1
Query: 655 LTEDLISEILSRLPVKTLLQYRCVSKPWCSLIDSPRFVKAHLKRSIECNTNTGLIIRGDN 834
+ +D++S++L LPVK LL++RC+SKP CSLIDSP F+ HL S++ +N LI+R N
Sbjct: 4 IPDDIVSDVLLLLPVKALLRFRCLSKPLCSLIDSPDFIDHHLSHSLKTRSNLFLILRDWN 63
Query: 835 FHLVDFDSLEHATPVEID---DPLRLRLYGCSIVSSVDGLHCLFNPRPDIFIWNPATRKC 1005
+ +DFDSL +P D PL+ + G V S +GL L N D+ ++NPATRK
Sbjct: 64 LYTLDFDSLSSVSPAAADVLIHPLQ-KGGGTEAVGSCNGLLALRNSERDLALYNPATRKY 122
Query: 1006 RHLPKLPADFNRPXXXXXXXXXXXXYDASNDDYKVMRIQT----DDPVLAGS---KVIVY 1164
+ +P + +D+ ++DY+++R+ T DD + +V VY
Sbjct: 123 KRVPVSEIEPPDRNSKTGYVFYGFGFDSVSEDYRLIRMATFVGEDDRCESFDYEYQVQVY 182
Query: 1165 SLKTHSWKR 1191
SLK SWKR
Sbjct: 183 SLKNDSWKR 191
Score = 101 bits (252), Expect = 3e-19
Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 14/190 (7%)
Frame = +1
Query: 1 KTHSWKRLQNIPYQFQY-----FGV-----WGMFMGGALHWIAVKSQGCP---SILAVDL 141
K SWKR++ +PY ++ F V +G+F ALHW+ SI+A D+
Sbjct: 185 KNDSWKRIKGLPYYLRFLYKPFFQVLHRRGYGVFACNALHWVMPHWPELGVNNSIIAFDI 244
Query: 142 GVENHREIQMPKLQTKNVH-QLSIITFEKSLCILEYLFSVRLNVWVMKDYGVGNSWCKLF 318
E +++ P ++ Q+ E LC + +++WVM++YGV SW KLF
Sbjct: 245 VNETFQQVPQPNWSDNQLNFQVDAGVLEGRLCAMCNCGHECIDLWVMEEYGVKESWIKLF 304
Query: 319 SVEQPKAIRSFVTITPLAYSKSRKDVLLEVDNKMVMWYNPKKKKARTAKIDNLPSIFDLE 498
S K++ + + + PL YSK R+ +LLEV++ ++WY+ K RT K+ P F
Sbjct: 305 SFRLSKSMSNLMFLRPLCYSKDREKMLLEVNDHKLVWYDWNKTSVRTVKVKGGPRSFGAA 364
Query: 499 VYTESLVPVD 528
+ SLVP+D
Sbjct: 365 MCVGSLVPLD 374
>ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|222854764|gb|EEE92311.1|
predicted protein [Populus trichocarpa]
Length = 400
Score = 115 bits (289), Expect = 2e-23
Identities = 63/190 (33%), Positives = 106/190 (55%), Gaps = 14/190 (7%)
Frame = +1
Query: 1 KTHSWKRLQNIPYQFQ-----YFGV-----WGMFMGGALHWIAVKSQGC---PSILAVDL 141
K WK+++ +P + + +F + +G+F G ALHWI + + +L D+
Sbjct: 183 KNDKWKKIEGLPIRLRLLSKPFFHILNRRGYGVFAGHALHWIVPQRRELGIRDCVLGFDI 242
Query: 142 GVENHREIQMPKLQTKNVH-QLSIITFEKSLCILEYLFSVRLNVWVMKDYGVGNSWCKLF 318
+ E+ P + K ++ + + E +LC++ V ++VWVMK+YGV SWCK+F
Sbjct: 243 RDDKFFELPQPDYENKGMNFHVDVGVLEGNLCVMCNYEHVCVDVWVMKEYGVKESWCKMF 302
Query: 319 SVEQPKAIRSFVTITPLAYSKSRKDVLLEVDNKMVMWYNPKKKKARTAKIDNLPSIFDLE 498
SV K I +F+ + PL YSK VLLEV+ + ++WY+ K K A+ ++ PS F E
Sbjct: 303 SVHAIKWISAFMFLRPLVYSKGGDMVLLEVNGEKLLWYDWKNKHAKVVRVRGGPSSFGSE 362
Query: 499 VYTESLVPVD 528
+Y ESL+ ++
Sbjct: 363 MYVESLIRIN 372
Score = 99.4 bits (246), Expect = 2e-18
Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 9/188 (4%)
Frame = +1
Query: 655 LTEDLISEILSRLPVKTLLQYRCVSKPWCSLIDSPRFVKAHLKRSIECNTNTGLIIRGDN 834
+ ++I +IL +LPVK+L+++R +SKP CSLID P F+ HL SI +N +I++ +
Sbjct: 4 IPHEVIHDILLQLPVKSLVRFRSLSKPICSLIDGPNFINLHLNHSITTKSNHSIILKEWD 63
Query: 835 FHLVDFDSLEHATPVEIDDPLRLRLYGCSIVSSVDGLHCLFNPRPDIFIWNPATRKCRHL 1014
VDFD+L A VE+ G ++ SV+GL L +I ++N +TR+C+
Sbjct: 64 LFAVDFDALSDA--VEVKHHPLYSGGGTEVIGSVNGLVFLRRSETNIAVYNLSTRECKKC 121
Query: 1015 PKLPADFNRPXXXXXXXXXXXXYDASNDDYKVMR----IQTDDPVLAGS-----KVIVYS 1167
+ R YD+ DDYKV+R ++ D G +V VYS
Sbjct: 122 YVAETEIPRRDMTTGYVYYGFGYDSYGDDYKVVRMAQFVREDGGGDGGGLGCEYEVKVYS 181
Query: 1168 LKTHSWKR 1191
LK WK+
Sbjct: 182 LKNDKWKK 189
>ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|222867152|gb|EEF04283.1|
predicted protein [Populus trichocarpa]
Length = 419
Score = 115 bits (287), Expect = 3e-23
Identities = 65/190 (34%), Positives = 109/190 (57%), Gaps = 14/190 (7%)
Frame = +1
Query: 1 KTHSWKRLQNIPYQF-----QYFGV-----WGMFMGGALHWIAVKSQGC---PSILAVDL 141
K WK+++++P Q+F V +G+F G ALHWI + + +L D+
Sbjct: 191 KNDKWKKIEDLPICLKLLSKQFFHVLHRRGYGVFAGHALHWIIPQRRQLGIRDCVLGFDI 250
Query: 142 GVENHREIQMPKLQTKNVH-QLSIITFEKSLCILEYLFSVRLNVWVMKDYGVGNSWCKLF 318
+ E+ P ++K + Q+ + E +LC++ V ++VWVM++YG+ SWCK+F
Sbjct: 251 RNDKFFELPQPNYESKGMSFQVDVGVLEGNLCVMCNYEYVCVDVWVMREYGMKESWCKMF 310
Query: 319 SVEQPKAIRSFVTITPLAYSKSRKDVLLEVDNKMVMWYNPKKKKARTAKIDNLPSIFDLE 498
SV+ K I +F+ + PL YSK VLLEV+++ ++WY+ K K A+ KI P+ + E
Sbjct: 311 SVQGIKWIGAFMFLRPLIYSKDGGKVLLEVNDEKLVWYDWKNKHAKVVKIRGGPNSYGSE 370
Query: 499 VYTESLVPVD 528
+Y ESLV ++
Sbjct: 371 MYVESLVRIN 380
Score = 92.4 bits (228), Expect = 2e-16
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 17/196 (8%)
Frame = +1
Query: 655 LTEDLISEILSRLPVKTLLQYRCVSKPWCSLIDSPRFVKAHLKRSIECNTNTGLIIRGDN 834
+ ++I++I +LPVK+LL++R +SKP CSLID P F+K HL SI +N +I++ +
Sbjct: 4 IPHEIITDIFQQLPVKSLLRFRSLSKPICSLIDGPDFIKFHLYHSITAKSNHSVILKEWD 63
Query: 835 FHLVDFDSLEHATPVEIDDPLRLRLYGCSIVSSVDGLHCLFNPRPDIFIWNPATRKCRHL 1014
VDFD+L A VE+ G ++ SV+GL L + ++ ++N +TR+ +
Sbjct: 64 LFTVDFDTLSDA--VEVKHHPLYAAGGTEVIGSVNGLVFLRHSERNLAVYNLSTREWKKC 121
Query: 1015 PKLPADFNRPXXXXXXXXXXXXYDASNDDYKVMR----IQTDDPVLAGS----------- 1149
+ R YD+ DDYKV+R ++ D+ G
Sbjct: 122 FVVEIKPPRRDLITGYVYYGFGYDSVGDDYKVVRMAQFVREDEGGGGGGGYGDGGGGLGC 181
Query: 1150 --KVIVYSLKTHSWKR 1191
+V VYSLK WK+
Sbjct: 182 EYEVRVYSLKNDKWKK 197