BLASTX nr result

ID: Bupleurum21_contig00006024 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00006024
         (1834 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285794.1| PREDICTED: uncharacterized protein LOC100243...   197   6e-48
gb|ABB29919.1| unknown [Solanum tuberosum]                            191   6e-46
ref|XP_002531488.1| serine/arginine rich splicing factor, putati...   180   1e-42
ref|XP_004171401.1| PREDICTED: uncharacterized LOC101216322 [Cuc...   165   4e-38
ref|XP_004143002.1| PREDICTED: uncharacterized protein LOC101216...   162   3e-37

>ref|XP_002285794.1| PREDICTED: uncharacterized protein LOC100243776 [Vitis vinifera]
            gi|302141951|emb|CBI19154.3| unnamed protein product
            [Vitis vinifera]
          Length = 257

 Score =  197 bits (502), Expect = 6e-48
 Identities = 115/227 (50%), Positives = 126/227 (55%), Gaps = 1/227 (0%)
 Frame = -3

Query: 1832 DDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVEKLDGKVVDGREIMV 1653
            DDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVEKLDG+ VDGREIMV
Sbjct: 30   DDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVEKLDGRNVDGREIMV 89

Query: 1652 QFAKYGPNAERISKGRILEPAEKLKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1473
            QFAKYGPNAERI KGRI+E + K KG                                  
Sbjct: 90   QFAKYGPNAERIHKGRIIETSSKSKGRSRSRSPRPRHRDEYRDRDYRKRSRSRSRGRNDR 149

Query: 1472 XXXXXXXXXYHHKSRDRSLSPDYRKDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1293
                        +SR RS SPD+ KDR                                 
Sbjct: 150  DRYRGKERDSRRRSRSRSASPDHHKDRGRGRYDDERRSRSRSYGSASPARRSPSPRGSPS 209

Query: 1292 XXKT-PTRDRSIDGRDHKERSPVLRSVSPRARAADSRTPSPRNSDAE 1155
              +T P+R+ S  GR   ERSP  +SVSPR R ADSR+PSP NSDA+
Sbjct: 210  PRRTPPSREESPVGRKRNERSPTPKSVSPRGRPADSRSPSPHNSDAD 256


>gb|ABB29919.1| unknown [Solanum tuberosum]
          Length = 258

 Score =  191 bits (485), Expect = 6e-46
 Identities = 114/229 (49%), Positives = 126/229 (55%), Gaps = 3/229 (1%)
 Frame = -3

Query: 1832 DDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVEKLDGKVVDGREIMV 1653
            DDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKY DEAQKAVEKLDG+VVDGREIMV
Sbjct: 30   DDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYQDEAQKAVEKLDGRVVDGREIMV 89

Query: 1652 QFAKYGPNAERISKGRILEPAEKLKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1473
            +FAKYGPNAERI KGRILEP ++ KG                                  
Sbjct: 90   RFAKYGPNAERIDKGRILEPVQRTKGRSRSRSPRPRHRDHRDKDSRRRSRSRSRSRSKGR 149

Query: 1472 XXXXXXXXXYH-HKSRDRSLSPDYRK--DREXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1302
                        ++ R RS SPDY K   R                              
Sbjct: 150  YDRDQYRGRDRDNRHRSRSRSPDYHKGRGRGKYDEDRRSRSRSHGRSASPARRSPSPRRS 209

Query: 1301 XXXXXKTPTRDRSIDGRDHKERSPVLRSVSPRARAADSRTPSPRNSDAE 1155
                  TP RD S DGR+HK+RSP  +S+SPR R A SR+P PR SDA+
Sbjct: 210  PSPRRITPPRDASPDGRNHKDRSPTPKSISPRGRRAGSRSPLPR-SDAD 257


>ref|XP_002531488.1| serine/arginine rich splicing factor, putative [Ricinus communis]
            gi|223528897|gb|EEF30895.1| serine/arginine rich splicing
            factor, putative [Ricinus communis]
          Length = 257

 Score =  180 bits (456), Expect = 1e-42
 Identities = 106/227 (46%), Positives = 118/227 (51%), Gaps = 1/227 (0%)
 Frame = -3

Query: 1832 DDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVEKLDGKVVDGREIMV 1653
            DDLFPLFDKYGKVVD+FIPRDRRTGDSRGFAFVRYKYADEAQKAVE+LDG+VVDGREI V
Sbjct: 30   DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVERLDGRVVDGREITV 89

Query: 1652 QFAKYGPNAERISKGRILEPAEKLKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1473
            QFAKYGPNAERI KGRI+EP  + +                                   
Sbjct: 90   QFAKYGPNAERIHKGRIIEPVPRSRNRSRSRSPRRRYRDDYKDRDYRKRSRSKSLDRHER 149

Query: 1472 XXXXXXXXXYHHKSRDRSLSPDYRKDR-EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1296
                     Y  +SR RS SPDY + R                                 
Sbjct: 150  DKYRGRERDYRRQSRSRSASPDYSRGRGRGRYDDERRSSSRSMGSASPARRSPSPRRSRS 209

Query: 1295 XXXKTPTRDRSIDGRDHKERSPVLRSVSPRARAADSRTPSPRNSDAE 1155
                +P +  S D R    RSP  RS SP  RA  SR+PSPRNSD +
Sbjct: 210  PLKNSPPKGASPDRRSRDGRSPTPRSASPHGRAPASRSPSPRNSDVD 256


>ref|XP_004171401.1| PREDICTED: uncharacterized LOC101216322 [Cucumis sativus]
          Length = 251

 Score =  165 bits (417), Expect = 4e-38
 Identities = 102/227 (44%), Positives = 120/227 (52%), Gaps = 1/227 (0%)
 Frame = -3

Query: 1832 DDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVEKLDGKVVDGREIMV 1653
            DDL+PLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA++KLDG+++DGREIMV
Sbjct: 30   DDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMV 89

Query: 1652 QFAKYGPNAERISKGRILEPAEKLKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1473
            QFAKYGPNAE+I KGR++E + K +G                                  
Sbjct: 90   QFAKYGPNAEKIRKGRVMESSSKTRG-RSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYD 148

Query: 1472 XXXXXXXXXYHHKSRDRSLSPDYRKDREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1293
                       ++SR RS SPD  KDR                                 
Sbjct: 149  RDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDDRRSASHSDRSMSPTRHSPDTRRSIS 208

Query: 1292 XXKT-PTRDRSIDGRDHKERSPVLRSVSPRARAADSRTPSPRNSDAE 1155
              KT P+R RS D     E SP   + SP  +  DSR+PSP  SDA+
Sbjct: 209  PRKTPPSRARSDD-----EHSPKGDNGSPDDKPVDSRSPSPARSDAD 250


>ref|XP_004143002.1| PREDICTED: uncharacterized protein LOC101216322 [Cucumis sativus]
          Length = 257

 Score =  162 bits (410), Expect = 3e-37
 Identities = 101/233 (43%), Positives = 119/233 (51%), Gaps = 7/233 (3%)
 Frame = -3

Query: 1832 DDLFPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAVEKLDGKVVDGREIMV 1653
            DDL+PLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKA++KLDG+++DGREIMV
Sbjct: 30   DDLYPLFDKYGKVVDVFIPRDRRTGDSRGFAFVRYKYADEAQKAIDKLDGRMLDGREIMV 89

Query: 1652 QFAKYGPNAERISKGRILEPAEKLKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1473
            QFAKYGPNAE+I KGR++E + K +G                                  
Sbjct: 90   QFAKYGPNAEKIRKGRVMESSSKTRG-RSRSRSPRSRHRDDHRDRDYRRRSRSRSRERYD 148

Query: 1472 XXXXXXXXXYHHKSRDRSLSPDYRKDR-------EXXXXXXXXXXXXXXXXXXXXXXXXX 1314
                       ++SR RS SPD  KDR       E                         
Sbjct: 149  RDRPHRSERERYRSRSRSASPDRSKDRRRGRDDDERRSASHSDRRFYTDFSMSPTRHSPD 208

Query: 1313 XXXXXXXXXKTPTRDRSIDGRDHKERSPVLRSVSPRARAADSRTPSPRNSDAE 1155
                       P+R RS D     E SP   + SP  +  DSR+PSP  SDA+
Sbjct: 209  TRRSISPRKTPPSRARSDD-----EHSPKGDNGSPDDKPVDSRSPSPARSDAD 256


Top