BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00004641
         (1865 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum ly...   256   1e-65
emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [So...   253   1e-64
emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Ni...   246   1e-62
emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Ni...   244   4e-62
emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Ni...   244   6e-62

>ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum lycopersicum]
           gi|10179602|gb|AAG13810.1|AF190891_1 PSTVd RNA-binding
           protein Virp1a [Solanum lycopersicum]
           gi|10179604|gb|AAG13811.1|AF190892_1 PSTVd RNA-binding
           protein Virp1b [Solanum lycopersicum]
           gi|10179606|gb|AAG13812.1|AF190893_1 PSTVd RNA-binding
           protein Virp1c [Solanum lycopersicum]
           gi|10179608|gb|AAG13813.1|AF190894_1 PSTVd RNA-binding
           protein Virp1d [Solanum lycopersicum]
           gi|13186132|emb|CAC33448.1| PSTVd RNA-biding protein,
           Virp1 [Solanum lycopersicum] gi|13186134|emb|CAC33449.1|
           PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
           gi|13186136|emb|CAC33450.1| PSTVd RNA-biding protein,
           Virp1 [Solanum lycopersicum] gi|13186138|emb|CAC33451.1|
           PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
          Length = 602

 Score =  256 bits (655), Expect = 1e-65
 Identities = 138/240 (57%), Positives = 165/240 (68%), Gaps = 7/240 (2%)
 Frame = +3

Query: 99  EGLMKMCKQILTKLMRNRNSWVFNKPVDAIALGLHDYHQIVKRPMDLGTVKTNLSKNLYS 278
           E +MK C+QIL KLM+++N W+FN PVDA ALGLHDYHQI+KRPMDLGTVK+NL+KN Y 
Sbjct: 190 ESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRPMDLGTVKSNLAKNFYP 249

Query: 279 SPTEFASDVRLTFNNAMLYNPKTDQVHSMAAQLLSQFEDMFRPVQDKMDIYIQKDGRSFV 458
           SP EFA+DVRLTFNNA+LYNPKTDQV++ A QLL +FEDMFRP+QDKM+    + GR   
Sbjct: 250 SPFEFAADVRLTFNNALLYNPKTDQVNAFAEQLLGRFEDMFRPLQDKMNKL--EGGRRDY 307

Query: 459 N--DDLQGSSWNEIPTPDRPKKPKTSLVGTIPPRNVEHIPDPLHNQNVSSESNRSNSDPP 632
           +  D+LQGSSWN IPTP+R KKPK + V  I  +           QN SS S  S   PP
Sbjct: 308 HPVDELQGSSWNHIPTPERVKKPKPTPVPNISKKQE-------RMQNHSSASTPSLPVPP 360

Query: 633 -----SMQSPVPTPSPLHXXXXXXXXXXXXXXTLKQPKPKAKDPNKRDMTMDEKQKLGVG 797
                  QSP+ TPSP+                 KQPKP+AKDPNKR+M M+EK KLGVG
Sbjct: 361 PNPPARQQSPLSTPSPVRAPAAKPQSAAKVPTMGKQPKPRAKDPNKREMNMEEKHKLGVG 420



 Score = 98.2 bits (243), Expect = 7e-18
 Identities = 59/121 (48%), Positives = 67/121 (55%), Gaps = 10/121 (8%)
 Frame = +2

Query: 962  DEIELDIEALDTETLWELDRFVTNWKKLASKTKRQALMENF---------SAVPMDATDT 1114
            DEIELDIEALDTETLWELDRFVTNWKK+ SKTKRQALM N          SA      + 
Sbjct: 448  DEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAEA 507

Query: 1115 DEPLAIDRNXXXXXXXXXXXXXXXXXXXXMLESS-FPPVEIEKDEGGNVRDNGNINGNGN 1291
            D P   ++N                       ++ FPPVEIEKDEGG  RD  N  G G+
Sbjct: 508  DGPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGG-RDQENGGGGGS 566

Query: 1292 A 1294
            +
Sbjct: 567  S 567


>emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [Solanum tuberosum]
          Length = 602

 Score =  253 bits (646), Expect = 1e-64
 Identities = 145/272 (53%), Positives = 175/272 (64%), Gaps = 7/272 (2%)
 Frame = +3

Query: 3   SGQKRLLPVELVGQRAENCSGSGIMIANGGDYEGLMKMCKQILTKLMRNRNSWVFNKPVD 182
           S   + LP  +  +   N  G G + A G   E +MK C+QIL KLM+++N W+FN PVD
Sbjct: 160 SKDPKKLPNGVENRNFGNPVGGGGVKAIGT--ESMMKECRQILAKLMKHKNGWIFNIPVD 217

Query: 183 AIALGLHDYHQIVKRPMDLGTVKTNLSKNLYSSPTEFASDVRLTFNNAMLYNPKTDQVHS 362
           A ALGLHDYHQI+KRP+DLGTVK+NL+KN Y SP EFA+DVRLTFNNA+LYNPKTDQV+ 
Sbjct: 218 AEALGLHDYHQIIKRPIDLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNG 277

Query: 363 MAAQLLSQFEDMFRPVQDKMDIYIQKDGRSFVN--DDLQGSSWNEIPTPDRPKKPKTSLV 536
            A QLL +FEDMFRP+QDKM+    + GR   +  D+LQGSSWN IPTP+R KKPK + V
Sbjct: 278 FAEQLLGRFEDMFRPLQDKMNKL--EGGRRDYHPVDELQGSSWNHIPTPERVKKPKATPV 335

Query: 537 GTIPPRNVEHIPDPLHNQNVSSESNRSNSDPP-----SMQSPVPTPSPLHXXXXXXXXXX 701
             I  +           QN SS S  S   PP       QSP+ TPSP+           
Sbjct: 336 PHISKKQE-------RMQNHSSASTPSLPVPPPNPPARQQSPLSTPSPVRAPPSKPESAA 388

Query: 702 XXXXTLKQPKPKAKDPNKRDMTMDEKQKLGVG 797
                 KQPKP+AKDPNKR M M+EK KLGVG
Sbjct: 389 KVPAMGKQPKPRAKDPNKRVMNMEEKHKLGVG 420



 Score = 93.6 bits (231), Expect = 2e-16
 Identities = 58/122 (47%), Positives = 66/122 (54%), Gaps = 11/122 (9%)
 Frame = +2

Query: 962  DEIELDIEALDTETLWELDRFVTNWKKLASKTKRQALMEN----------FSAVPMDATD 1111
            DEIELDIEALDTETLWELDRFVTNWKK+ SKTKRQALM N           SA      +
Sbjct: 448  DEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMINNLGPPSASAAASAATTSVAE 507

Query: 1112 TDEPLAIDRNXXXXXXXXXXXXXXXXXXXXMLESS-FPPVEIEKDEGGNVRDNGNINGNG 1288
             D P   ++N                       ++ FPPVEIEKDEGG  RD  N  G  
Sbjct: 508  ADGPTTSEKNDSFKKPKKGDVGEEDVEIEDDEPATHFPPVEIEKDEGGG-RDQENGGGGS 566

Query: 1289 NA 1294
            ++
Sbjct: 567  SS 568


>emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Nicotiana tabacum]
          Length = 617

 Score =  246 bits (628), Expect = 1e-62
 Identities = 127/240 (52%), Positives = 160/240 (66%), Gaps = 7/240 (2%)
 Frame = +3

Query: 99  EGLMKMCKQILTKLMRNRNSWVFNKPVDAIALGLHDYHQIVKRPMDLGTVKTNLSKNLYS 278
           E +MK C+Q+L KLM++++ W+FN PVDA A+GLHDYHQI+KRPMDLGTVK+NL  N Y 
Sbjct: 191 ENMMKECRQVLAKLMKHKSGWIFNTPVDAKAMGLHDYHQIIKRPMDLGTVKSNLINNFYP 250

Query: 279 SPTEFASDVRLTFNNAMLYNPKTDQVHSMAAQLLSQFEDMFRPVQDKMDIYIQKDGRSFV 458
           +P EFA+DVRLTFNNA+LYNPKTDQVH  A QLL++FEDMFRP+QDK++      GR   
Sbjct: 251 TPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMFRPIQDKLNKLDGGTGRRDF 310

Query: 459 N--DDLQGSSWNEIPTPDRPKKPKTSLVGTIPPRNVEHIPDPLHNQNVSSESNRSNSDPP 632
              D+LQGSSWN IPTP+R KKPK +    I  +    + +       S    +   +PP
Sbjct: 311 RAIDELQGSSWNHIPTPERVKKPKPTPAPHISKKQERMMQNHSSASTPSLPVQQPPDNPP 370

Query: 633 --SMQSPVPTPSPLHXXXXXXXXXXXXXXTL---KQPKPKAKDPNKRDMTMDEKQKLGVG 797
               QSP+ TPSP+                    KQPKP+AKDPNKR+M+M+EK KLGVG
Sbjct: 371 VVRQQSPLSTPSPVRAPPAAKPQSSVAAKVPPMGKQPKPRAKDPNKREMSMEEKHKLGVG 430



 Score = 87.0 bits (214), Expect = 2e-14
 Identities = 60/121 (49%), Positives = 66/121 (54%), Gaps = 19/121 (15%)
 Frame = +2

Query: 962  DEIELDIEALDTETLWELDRFVTNWKKLASKTKRQALMENF------SAVPMDATDT--- 1114
            DEIELDIEALDTETLWELDRFVTNWKK+ SKTKRQAL+ N       SA    AT T   
Sbjct: 458  DEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTSVA 517

Query: 1115 --DEPLAIDRNXXXXXXXXXXXXXXXXXXXXMLE---SSFPPVEIE--KDE---GGNVRD 1264
              D P   ++N                      +   + FPPVEIE  KDE   GG VRD
Sbjct: 518  EADGPSTSEKNDSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDKDEGGGGGQVRD 577

Query: 1265 N 1267
            N
Sbjct: 578  N 578


>emb|CAD43287.1| bromodomain-containing RNA-binding protein 2 [Nicotiana tabacum]
          Length = 616

 Score =  244 bits (624), Expect = 4e-62
 Identities = 134/272 (49%), Positives = 170/272 (62%), Gaps = 7/272 (2%)
 Frame = +3

Query: 3   SGQKRLLPVELVGQRAENCSGSGIMIANGGDYEGLMKMCKQILTKLMRNRNSWVFNKPVD 182
           S   + LP  +  +   N  G G+    G   E +MK C Q+L KLM++++ W+FN PVD
Sbjct: 160 SKDPKKLPNGVDNRNFGNPGGGGVKGIIGK--ENMMKECTQVLGKLMKHKSGWIFNTPVD 217

Query: 183 AIALGLHDYHQIVKRPMDLGTVKTNLSKNLYSSPTEFASDVRLTFNNAMLYNPKTDQVHS 362
           A ALGLHDYHQI+KRP DLGT K+NLS N Y +P EFA+DVRLTFNNA+LYNPKTDQVH 
Sbjct: 218 AEALGLHDYHQIIKRPXDLGTXKSNLSNNFYPTPFEFAADVRLTFNNALLYNPKTDQVHG 277

Query: 363 MAAQLLSQFEDMFRPVQDKMDIYIQKDGRSFVN--DDLQGSSWNEIPTPDRPKKPKTSLV 536
            A QLL++FEDMFRP+QDK++      GR   +  D+LQGSSWN IPTP+R KKPK +  
Sbjct: 278 FAEQLLARFEDMFRPIQDKLNKLDGGSGRRDFHAIDELQGSSWNHIPTPERVKKPKPTPA 337

Query: 537 GTIPPRNVEHIPDPLHNQNVSSESNRSNSDPP--SMQSPVPTPSPLHXXXXXXXXXXXXX 710
             I  +    + +       S    +   +PP    QSP+ TPSP+              
Sbjct: 338 PHISKKQERMMQNHSSASTPSLPVQQPPDNPPVVRQQSPLSTPSPVRAPPAAKPQSSVAA 397

Query: 711 XTL---KQPKPKAKDPNKRDMTMDEKQKLGVG 797
                 KQPKP+AKDPNKR+M+M+EK KLGVG
Sbjct: 398 KVPPMGKQPKPRAKDPNKREMSMEEKHKLGVG 429



 Score = 87.0 bits (214), Expect = 2e-14
 Identities = 60/121 (49%), Positives = 66/121 (54%), Gaps = 19/121 (15%)
 Frame = +2

Query: 962  DEIELDIEALDTETLWELDRFVTNWKKLASKTKRQALMENF------SAVPMDATDT--- 1114
            DEIELDIEALDTETLWELDRFVTNWKK+ SKTKRQAL+ N       SA    AT T   
Sbjct: 457  DEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTTSVA 516

Query: 1115 --DEPLAIDRNXXXXXXXXXXXXXXXXXXXXMLE---SSFPPVEIE--KDE---GGNVRD 1264
              D P   ++N                      +   + FPPVEIE  KDE   GG VRD
Sbjct: 517  EADGPSTSEKNDSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDKDEGGGGGQVRD 576

Query: 1265 N 1267
            N
Sbjct: 577  N 577


>emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Nicotiana
           benthamiana]
          Length = 613

 Score =  244 bits (623), Expect = 6e-62
 Identities = 135/272 (49%), Positives = 171/272 (62%), Gaps = 7/272 (2%)
 Frame = +3

Query: 3   SGQKRLLPVELVGQRAENCSGSGIMIANGGDYEGLMKMCKQILTKLMRNRNSWVFNKPVD 182
           S   + LP  +  +   N  G G+    G   E +MK C+Q+L KLM++++ W+FN PVD
Sbjct: 160 SKDPKKLPNGVDNRNFGNPGGGGVKGIIG--MENMMKECRQVLGKLMKHKSGWIFNTPVD 217

Query: 183 AIALGLHDYHQIVKRPMDLGTVKTNLSKNLYSSPTEFASDVRLTFNNAMLYNPKTDQVHS 362
           A ALGLHDY QI+KRPMDLGTVK+NLS NLY +P EFA+DVRLTFNNA+LYNPKTDQVH 
Sbjct: 218 AEALGLHDYRQIIKRPMDLGTVKSNLSNNLYPTPFEFAADVRLTFNNALLYNPKTDQVHV 277

Query: 363 MAAQLLSQFEDMFRPVQDKMDIYIQKDGRSFVN--DDLQGSSWNEIPTPDRPKKPKTSLV 536
            A  LL++FEDMFRP QDK++      GR   +  D+LQGSSWN IPTP+R KKPK +  
Sbjct: 278 FAELLLTRFEDMFRPFQDKLNKLDGGSGRRDFHAIDELQGSSWNHIPTPERVKKPKPTPA 337

Query: 537 GTIPPRNVEHIPDPLHNQNVSSESNRSNSDPP--SMQSPVPTPSPLHXXXXXXXXXXXXX 710
             I  +    + +       S    +   +PP    QSP+ TPSP+              
Sbjct: 338 PHISKKQERMMQNHSSASTPSLPVQQPPDNPPVVQQQSPLSTPSPVRAPPAAKPQSSVAA 397

Query: 711 XT---LKQPKPKAKDPNKRDMTMDEKQKLGVG 797
                 KQPKP+AKDPNKR+M+M+EK KLGVG
Sbjct: 398 KVPPMEKQPKPRAKDPNKREMSMEEKHKLGVG 429



 Score = 89.7 bits (221), Expect = 2e-15
 Identities = 52/110 (47%), Positives = 60/110 (54%), Gaps = 13/110 (11%)
 Frame = +2

Query: 962  DEIELDIEALDTETLWELDRFVTNWKKLASKTKRQALMENF----------SAVPMDATD 1111
            DEIELDIEALDTETLWELDRFVTNWKK+ SKTKRQAL+ N           SA      +
Sbjct: 457  DEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTSVAE 516

Query: 1112 TDEPLAIDRNXXXXXXXXXXXXXXXXXXXXMLE---SSFPPVEIEKDEGG 1252
             D P   ++N                      +   + FPPVEI+KDEGG
Sbjct: 517  ADGPSTSEKNDSFKKPKKGGDAGDEDDVEIEDDEPATQFPPVEIDKDEGG 566