BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00004584
         (5667 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       672   0.0  
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...   660   0.0  
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...   657   0.0  
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...   620   e-174
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   587   e-164

>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  672 bits (1734), Expect = 0.0
 Identities = 392/1178 (33%), Positives = 617/1178 (52%), Gaps = 28/1178 (2%)
 Frame = -2

Query: 3785 FCSYNIRGLHN--KLSFVKDFISSNKCSLLSLLETHVKQEDAQSLSNYISPNLSWHFNYS 3612
            FC +NIRG +N    S  K ++ +NK     ++ETHVKQ   +   N + P  S+  NY+
Sbjct: 6    FC-WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYA 64

Query: 3611 FHPNGRIWLGWDPLQWKLDVLFTSSQHITCSVIQLSSNKSFIVSFVYGSNYYLDRRNLWA 3432
            F   G+IW+ WDP   ++ V+  S Q ITC V+   S    IVS VY +N    R+ LW 
Sbjct: 65   FSDLGKIWVMWDP-SVQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWI 123

Query: 3431 DLSHIQSTININYNNPPWCLLGDFNSCIRPEESNRGNGWTT--SMHDLNNCLLQLGLTDL 3258
            ++  +   ++    + PW +LGDFN  + P+E +         +M D  +CLL   L+DL
Sbjct: 124  EI--VNMVVSGIIGDRPWLVLGDFNQVLNPQEHSNPVSLNVDINMRDFRDCLLAAELSDL 181

Query: 3257 KSTGSHYTWRSSCRPDALQRKLDRILVNDTWLSNLPNSFANFMQRGLSDHTPAAVNLGVL 3078
            +  G+ +TW +      + +K+DRILVND+W +  P+S   F     SDH    V L   
Sbjct: 182  RYKGNTFTWWNKSHTTPVAKKIDRILVNDSWNALFPSSLGIFGSLDFSDHVSCGVVLEET 241

Query: 3077 TNNIHKPFQLFQHILAHPDFLSVVASAWLE-SVRGSDWFVLTAKLKRTKKAIKNLNS-SF 2904
            +    +PF+ F ++L + DFL++V   W   +V GS  F ++ KLK  KK IK+ +  ++
Sbjct: 242  SIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKLKALKKPIKDFSRLNY 301

Query: 2903 GNVHDAVAAARADLQQFQIMQSVSPSLEETSEELKLMQNLQLALKKEELFLKQKSKVHWL 2724
              +      A   L   Q      P+    S EL+  +   +    EE F +QKS++ W 
Sbjct: 302  SELEKRTKEAHDFLIGCQDRTLADPTPINASFELEAERKWHILTAAEESFFRQKSRISWF 361

Query: 2723 KVGDGNNRYFFNSCRGRWNINRIVTLQDEMGNSVSDHKGLSQIATNYFQTILGEERPVDP 2544
              GDGN +YF      R + N I  L D  G  V   +G+  +  +YF ++LG+E  VDP
Sbjct: 362  AEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLCASYFGSLLGDE--VDP 419

Query: 2543 F------PDHITLPQLSETQKLSLVRPIRPSEILDSLKSMPPNKSPGPDGFTSEFFVKAW 2382
            +       + +   + S  Q   L       +I  +L S+P NKS GPDGFT+EFF+ +W
Sbjct: 420  YLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSCGPDGFTAEFFIDSW 479

Query: 2381 HIVGQDVINGIQSFFSNFSLPRCINSAAIALIPKVDSPQSMSQFRPISCCNVLYKCIAKI 2202
             IVG +V + I+ FFS+  L +  N+  I LIPK+ +P   S FRPISC N LYK IA++
Sbjct: 480  SIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARL 539

Query: 2201 LATRLKPLMEDIISCSQAAFVPKRSIGDNVLLAQALCRNYHLLSGAPRCTIKLDISKAFD 2022
            L  RL+ L+  +IS +Q+AF+P RS+ +NVLLA  L   Y+  + +PR  +K+D+ KAFD
Sbjct: 540  LTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFD 599

Query: 2021 SLNLSFIIYTLRKMNFPEMFIEWISICINSCMYSIKVNGSLEGYFKGNSGIRQGDPLSPF 1842
            S+   F+I  LR +  PE FI WIS CI++  +++ +NG   G+FK   G+RQGDPLSP+
Sbjct: 600  SVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPY 659

Query: 1841 LFIIAMEVMTACIKDQTKDSSFTFHSRCKKLDLSHVIFADDVLLFSRGDSSSVAALMKGV 1662
            LF++AME  +  +  + +     +H +   L +SH++FADDV++F  G S S+  + + +
Sbjct: 660  LFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETL 719

Query: 1661 SIFSKLSGLHLNMQKSSIFFGNVNPVVREEILCSTGLNLGTMPLTYLGLPLITSRLNKSI 1482
              F+  SGL +N  KS ++   +N  +      + G  +GT+P+ YLGLPL+  +L  + 
Sbjct: 720  DDFASWSGLKVNKDKSHLYLAGLNQ-LESNANAAYGFPIGTLPIRYLGLPLMNRKLRIAE 778

Query: 1481 CSPLVMKLCKRINSWTNRFLSFAGRLRLIKSILSSIQSYWSLYMFLPKGVLEQVQSMFAK 1302
              PL+ K+  R  SW N+ LSFAGR++LI S++    ++W     LPKG +++++S+ ++
Sbjct: 779  YEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSR 838

Query: 1301 FLWGGTAAVSPHYKVSWNICCLPTQEGGLGIRDATTWNDAAMIFQLWRIIKNQKSLWIQW 1122
            FLW G    +   KVSW   CLP  EGGLG+R    WN    +  +WR+   + SLW  W
Sbjct: 839  FLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADW 898

Query: 1121 FRTYVLKSKTIWETKPTAASSWSVRKILNSKHKASQYLQYIVGTNSSHSLWYDPWPGQXX 942
               + L   + W  +   + SW+ +++L+ +  A Q+L   VG       WYD W     
Sbjct: 899  QHLHHLSRGSFWAVEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGP 958

Query: 941  XXXXXXXXXXXXXXSH-DAKVCSFQSGNSWAQLPSNHYLATEVRHLLASIPI-----QRF 780
                              AKV S  S + W    S    A  +   L ++P+     +  
Sbjct: 959  LFRIIGDIGPSSLRVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDV 1018

Query: 779  DTISW--NG--SRHINISTIWNSIRSTGSSPPWVTVVWSPWMVSKCSFILWLALMNRLLT 612
            D   W  NG   +  + +  W +IR   +   W + +W    V K +F +W++ +NRLLT
Sbjct: 1019 DRYEWSVNGFLCQGFSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLT 1078

Query: 611  KDRMLKFGMNVDQSCILCNAGVETAAHLFADCNFTTAI---IQESPIP---LTCNWNEYL 450
            + R+  +G     +C+LC+   E+  HL   C F+  +   +     P   L  +W+E L
Sbjct: 1079 RQRLASWGHIQSDACVLCSFASESRDHLLLICEFSAQVWRLVFRRICPRQRLFSSWSELL 1138

Query: 449  QGNFVCNAVSKAHENLAYLYGGVAVHAIWKEINGRIHS 336
              ++V  +  +A   L  +   V V+ +W++ N  +H+
Sbjct: 1139 --SWVRQSSPEAPPLLRKIVSQVVVYNLWRQRNNLLHN 1174


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score =  660 bits (1702), Expect = 0.0
 Identities = 405/1214 (33%), Positives = 623/1214 (51%), Gaps = 31/1214 (2%)
 Frame = -2

Query: 3779 SYNIRGLHNKL---SFVKDFISSNKCSLLSLLETHVKQEDAQSLSNYISPNLSWHFNYSF 3609
            S+N+RG +N +   +F K F  S K    S+LET VK+  A+       P      NY F
Sbjct: 6    SWNVRGFNNSVRRRNFRKWFKLS-KALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEF 64

Query: 3608 HPNGRIWLGWDPLQWKLDVLFTSSQHITCSVIQLSSNKSFIVSFVYGSNYYLDRRNLWAD 3429
               GRIW+ WDP   ++ VL  S Q I+C+V     +  F+V+FVY  N    RR LW++
Sbjct: 65   AALGRIWVVWDPAV-EVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSE 123

Query: 3428 LSHIQSTININYNNPPWCLLGDFNSCIRP-EESNRGNGWTTSMHDLNNCLLQLGLTDLKS 3252
            L  + +  N   ++ PW +LGDFN  + P + S  G+  T  M +   CLL   ++DL  
Sbjct: 124  LELLAA--NQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPF 181

Query: 3251 TGSHYTWRSSCRPDALQRKLDRILVNDTWLSNLPNSFANFMQRGLSDHTPAAVNLGVLTN 3072
             G+HYTW ++   + + +K+DRILVND+WL   P S+ +F     SDH P+ VN+   + 
Sbjct: 182  RGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSG 241

Query: 3071 NIHKPFQLFQHILAHPDFLSVVASAWLE-SVRGSDWFVLTAKLKRTKKAIKNLNSS-FGN 2898
              +KPF+L   ++ HP+F+  +   W   + +GS  F L+ K K  K  I+  N   +  
Sbjct: 242  GRNKPFKLSNFLMHHPEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSG 301

Query: 2897 VHDAVAAARADLQQFQIMQSVSPSLEETSEELKLMQNLQLALKKEELFLKQKSKVHWLKV 2718
            +   V  A  +L+  Q     +PS      E +  ++       EE FL QKS+V WLK 
Sbjct: 302  LEKRVVQAAQNLKTCQNNLLAAPSSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKC 361

Query: 2717 GDGNNRYFFNSCRGRWNINRIVTLQDEMGNSVSDHKGLSQIATNYFQTILGEERPVDPFP 2538
            GD N  +F      R  IN I  L D+ G  + +   L     ++F+ + G    +    
Sbjct: 362  GDSNTTFFHRMMTARRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLISAE 421

Query: 2537 -----DHITLPQLSETQKLSLVRPIRPSEILDSLKSMPPNKSPGPDGFTSEFFVKAWHIV 2373
                 + +T  +  E  +  L   +  ++I     ++P NKSPGPDG+TSEFF K W IV
Sbjct: 422  GISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIV 481

Query: 2372 GQDVINGIQSFFSNFSLPRCINSAAIALIPKVDSPQSMSQFRPISCCNVLYKCIAKILAT 2193
            G  +I  +Q FF +  L    NS A+ ++PK  +   +++FRPISCCN +YK I+K+LA 
Sbjct: 482  GPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLAR 541

Query: 2192 RLKPLMEDIISCSQAAFVPKRSIGDNVLLAQALCRNYHLLSGAPRCTIKLDISKAFDSLN 2013
            RL+ ++   IS SQ+AFV  R + +NVLLA  L + +   + + R  +K+D+ KAFDS+ 
Sbjct: 542  RLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVG 601

Query: 2012 LSFIIYTLRKMNFPEMFIEWISICINSCMYSIKVNGSLEGYFKGNSGIRQGDPLSPFLFI 1833
              FII TL+  N P  F+ WI  CI S  +SI V+GSL GYFKG+ G+RQGDPLSP LF+
Sbjct: 602  WGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFV 661

Query: 1832 IAMEVMTACIKDQTKDSSFTFHSRCKKLDLSHVIFADDVLLFSRGDSSSVAALMKGVSIF 1653
            IAME+++  ++++  D S  +H +  ++ +S + FADD+++F  G +SS+  +   +  F
Sbjct: 662  IAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESF 721

Query: 1652 SKLSGLHLNMQKSSIFFGNVNPVVREEILCSTGLNLGTMPLTYLGLPLITSRLNKSICSP 1473
              LSGL +N +KS+++   +    +E+ L    +N GT P  YLGLPL+  +L +S  S 
Sbjct: 722  KNLSGLEMNTEKSAVYTAGLEDTDKEDTLAFGFVN-GTFPFRYLGLPLLHRKLRRSDYSQ 780

Query: 1472 LVMKLCKRINSWTNRFLSFAGRLRLIKSILSSIQSYWSLYMFLPKGVLEQVQSMFAKFLW 1293
            L+ K+  R N W  + LSFAGRL+LI S++ S  ++W     LPK  L+ ++ M  +FLW
Sbjct: 781  LIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLW 840

Query: 1292 GGTAAVSPHYKVSWNICCLPTQEGGLGIRDATTWNDAAMIFQLWRIIKNQKSLWIQWFRT 1113
            G         KVSW   CLP  EGGLG+R+  TWN    +  +W +   + SLW+ W   
Sbjct: 841  GNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHA 900

Query: 1112 YVLKSKTIWETKPTAASSWSVRKILNSKHKASQYLQYIVGTNSSHSLWYDPWPGQXXXXX 933
              L+    W  +  +  SW  + IL  +  A ++L+  VG     S WYD W        
Sbjct: 901  NRLRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIE 960

Query: 932  XXXXXXXXXXXSHDAKVCSFQSGNSWAQLPS----NHYLATEVRHLLASIPI----QRFD 777
                        H++ V +  S ++   LPS    N  LA  +R  L + P     +  D
Sbjct: 961  AIGASGPQLTGIHESAVVTEASSSTGWILPSARTRNASLA-NLRSTLLNSPAPSGDRGED 1019

Query: 776  TISW--NGSRHINIST--IWNSIRSTGSSPPWVTVVWSPWMVSKCSFILWLALMNRLLTK 609
            T +W   GS   + S+   W  +R   ++  W   VW    + K +F  W+A +NRL  +
Sbjct: 1020 TYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVR 1079

Query: 608  DRMLKFGMNVDQSCILCNAGVETAAHLFADCNFTTAIIQE-----SPIPLTCNWNEYLQG 444
             R   +  N    C +C    ET  HLF  C   + I Q+         +   W + ++ 
Sbjct: 1080 ARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSLIWQQVLARFGRSQMFREWKDIIE- 1138

Query: 443  NFVCNAVSKAHENLAYLYGGVAVHAIWKEINGRIHSPQQRNTVS---SIIMNIKSTVRAK 273
             ++ +        L  L    A+  IWKE N R+HS    +  +    I  +I+ ++ A+
Sbjct: 1139 -WMLSNQGSFSGTLKKLAVQTAIFHIWKERNSRLHSAMSASHTAIFKQIDRSIRDSILAR 1197

Query: 272  LATRPDFKKAATKY 231
            + TR +FK   +++
Sbjct: 1198 I-TRRNFKDLLSQW 1210


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score =  657 bits (1695), Expect = 0.0
 Identities = 402/1214 (33%), Positives = 615/1214 (50%), Gaps = 43/1214 (3%)
 Frame = -2

Query: 3776 YNIRGLH--NKLSFVKDFISSNKCSLLSLLETHVKQEDAQSLSNYISPNLSWHFNYSFHP 3603
            +N+RGL+  +K S +K +I  N      L+ET VK+     L   +  + S   NY  + 
Sbjct: 6    WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65

Query: 3602 NGRIWLGWDPLQWKLDVLFTSSQHITCSVIQLSSNKSFIVSFVYGSNYYLDRRNLWADLS 3423
             GRIW+ W     +L  ++ S Q +TCSV        F  SFVY SNY  +R+ LW++L 
Sbjct: 66   RGRIWVLWRK-NVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124

Query: 3422 -HIQSTININYNNPPWCLLGDFNSCIRPEESNRGNGW---TTSMHDLNNCLLQLGLTDLK 3255
             H  S I     + PW LLGDFN  +   E ++       T  M D    +    LTD+ 
Sbjct: 125  DHYDSPI---IRHKPWTLLGDFNETLDIAEHSQSFVHPMVTPGMRDFQQVINYCSLTDMA 181

Query: 3254 STGSHYTWRSSCRPDALQRKLDRILVNDTWLSNLPNSFANFMQRGLSDHTPAAVNLGVLT 3075
            + G  +TW +      + +KLDR+L+ND W      S++ F   G SDH    ++L    
Sbjct: 182  AQGPLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAGGCSDHLRCRISLNSEA 241

Query: 3074 NNIH---KPFQLFQHILAHPDFLSVVASAWLES----VRGSDWFVLTAKLKRTKKAIKNL 2916
             N     KPF+    +    DF  +V++ W ++    +  S  F  +  LK  K  I+++
Sbjct: 242  GNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLFRFSKNLKGLKPKIRSM 301

Query: 2915 -NSSFGNVHDAVAAARADLQQFQIMQSVSPSLEETSEELKLMQNLQLALKKEELFLKQKS 2739
                 GN+      A   L   Q +   +PS     EE             EE +LKQKS
Sbjct: 302  ARDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAMEEENAAYSRWDRVAILEEKYLKQKS 361

Query: 2738 KVHWLKVGDGNNRYFFNSCRGRWNINRIVTLQDEMGNSVSDHKGLSQIATNYFQTILGEE 2559
            K+HW +VGD N + F  +   R   N I  +    G   +    +   A  +F+  L   
Sbjct: 362  KLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGDEIKAEAERFFREFL--- 418

Query: 2558 RPVDPFPDHITLPQL--------SETQKLSLVRPIRPSEILDSLKSMPPNKSPGPDGFTS 2403
            + +    + +T+ +L        S+  + SL+RP+   EI   L  MP +KSPGPDG+TS
Sbjct: 419  QLIPNDFEGVTITELQQLLPVRCSDADQQSLIRPVTAEEIRKVLFRMPSDKSPGPDGYTS 478

Query: 2402 EFFVKAWHIVGQDVINGIQSFFSNFSLPRCINSAAIALIPKVDSPQSMSQFRPISCCNVL 2223
            EFF   W I+G +    +QSFF+   LP+ INS  +ALIPK    + M  +RPISCCNVL
Sbjct: 479  EFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVL 538

Query: 2222 YKCIAKILATRLKPLMEDIISCSQAAFVPKRSIGDNVLLAQALCRNYHLLSGAPRCTIKL 2043
            YK I+KI+A RLK ++   I+ +Q+AFV  R + +N+LLA  L ++YH  + + RC IK+
Sbjct: 539  YKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKI 598

Query: 2042 DISKAFDSLNLSFIIYTLRKMNFPEMFIEWISICINSCMYSIKVNGSLEGYFKGNSGIRQ 1863
            DISKAFDS+   F+I     + FP  FI WI+ICI +  +S++VNG L GYF+ + G+RQ
Sbjct: 599  DISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQ 658

Query: 1862 GDPLSPFLFIIAMEVMTACIKDQTKDSSFTFHSRCKKLDLSHVIFADDVLLFSRGDSSSV 1683
            G  LSP+LF+I M+V++  +        F +H +CK + L+H+ FADD+++ S G   S+
Sbjct: 659  GCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSI 718

Query: 1682 AALMKGVSIFSKLSGLHLNMQKSSIFFGNVNPVVREEILCSTGLNLGTMPLTYLGLPLIT 1503
              ++K    F+K SGL ++++KS+++   ++   R E+      + G +P+ YLGLPLIT
Sbjct: 719  ERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLIT 778

Query: 1502 SRLNKSICSPLVMKLCKRINSWTNRFLSFAGRLRLIKSILSSIQSYWSLYMFLPKGVLEQ 1323
             RL+ + C PL+ ++ KRI SWT+RFLS+AGRL LI S+L SI ++W     LP+  + +
Sbjct: 779  KRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRE 838

Query: 1322 VQSMFAKFLWGGTAAVSPHYKVSWNICCLPTQEGGLGIRDATTWNDAAMIFQLWRIIKNQ 1143
            ++ M + FLW GT   S   K+SW++ C P  EGGLG+R     ND   +  +W+I+ + 
Sbjct: 839  LEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHS 898

Query: 1142 KSLWIQWFRTYVLKSKTIWETKPTAA-SSWSVRKILNSKHKASQYLQYIVGTNSSHSLWY 966
             SLW++W   ++L++ + WE K T +  SW  +K+L  +  A    +  VG     S WY
Sbjct: 899  NSLWVKWVDQHLLRNASFWEVKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWY 958

Query: 965  DPWP--GQXXXXXXXXXXXXXXXXSHDAKVCSFQSGNSWAQLPSNHYLATEVRHLLASIP 792
            D W   GQ                             +W       +   +V +++    
Sbjct: 959  DNWSDLGQLLERTGDRGLIDLGISRR------MTVEEAWTNRRQRRH-RNDVYNVIEDAL 1011

Query: 791  IQRFDT-------ISWNGSRHINISTI-----WNSIRSTGSSPPWVTVVWSPWMVSKCSF 648
             + +DT       + W G   +  +T      W+  RST +  PW  V+W      K SF
Sbjct: 1012 KKSWDTRTETEDKVLWRGKSDVFRTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSF 1071

Query: 647  ILWLALMNRLLTKDRMLKFGMNVDQSCILCNAGVETAAHLFADCNFTTAIIQE-----SP 483
              WLA   RL T DRM+ +   +   CI C   +ET  HLF  C+FT+ I  +       
Sbjct: 1072 CSWLAAHGRLPTGDRMINWANGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIFK 1131

Query: 482  IPLTCNWNEYLQGNFVCNAVSKAHENLAYLYGGVA-VHAIWKEINGRIHSPQQRNTVSSI 306
               T +W   ++   + N+     E     Y   A ++ +W+E NGR H  +  NT S +
Sbjct: 1132 TQYTSHWQSIIEA--ITNSQHHRVEWFLRRYVFQATIYIVWRERNGRRHG-EPPNTASQL 1188

Query: 305  IMNIKSTVRAKLAT 264
            +  I   +R +L++
Sbjct: 1189 VGWIDKQIRNQLSS 1202


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score =  620 bits (1599), Expect = e-174
 Identities = 328/925 (35%), Positives = 522/925 (56%), Gaps = 8/925 (0%)
 Frame = -2

Query: 3779 SYNIRGLHN--KLSFVKDFISSNKCSLLSLLETHVKQEDAQSLSNYISPNLSWHFNYSFH 3606
            ++N+RGL++  K+  VK F+ S K SL SL ET V+Q+++  +        SW  NY+  
Sbjct: 5    TWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINNYACS 64

Query: 3605 PNGRIWLGWDPLQWKLDVLFTSSQHITCSVIQLSSNKSFIVSFVYGSNYYLDRRNLWADL 3426
            P GRIW+GW      ++VL  + Q IT  V        F ++ VYG +   DR+ LW +L
Sbjct: 65   PRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVLWEEL 124

Query: 3425 SHIQSTININYNNPPWCLLGDFNSCIRPEESNRGNGWTTS-MHDLNNCLLQLGLTDLKST 3249
             +  S  +      P  L+GD+N+    ++   GN  + +   DL + +L+  L +  +T
Sbjct: 125  YNFVSVCH-----EPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTT 179

Query: 3248 GSHYTWRS-SCRPDALQRKLDRILVNDTWLSNLPNSFANFMQRGLSDHTPAAVNLGVLTN 3072
            G  Y+W + S   D +  ++D+  VN  W++  P+    + + G+SDH+P   NL    +
Sbjct: 180  GLFYSWNNKSIGADRISSRIDKSFVNVAWINQYPDVVVEYREAGISDHSPLIFNLATQHD 239

Query: 3071 NIHKPFQLFQHILAHPDFLSVVASAWLESVRGSDWFVLTAKLKRTKKAIKNLNSS-FGNV 2895
               +PF+    +     F+ VV  AW  +        +  +L+  K+A+K+ +S  F   
Sbjct: 240  EGGRPFKFLNFLADQNGFVEVVKEAWGSANHRFKMKNIWVRLQAVKRALKSFHSKKFSKA 299

Query: 2894 HDAVAAARADLQQFQIMQSVSPSLEETSEELKLMQNLQLALKKEELFLKQKSKVHWLKVG 2715
            H  V   R  L   Q +  VS   E   EE  L+  L+     +E  LKQKS++ WL +G
Sbjct: 300  HCQVEELRRKLAAVQALPEVSQVSELQEEEKDLIAQLRKWSTIDESILKQKSRIQWLSLG 359

Query: 2714 DGNNRYFFNSCRGRWNINRIVTLQDEMGNSVSDHKGLSQIATNYFQTILG-EERPVDPFP 2538
            D N+++FF + + R   N+IV LQ++ G+ ++++  +     N+++ +LG     ++   
Sbjct: 360  DSNSKFFFTAIKVRKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEAID 419

Query: 2537 DHITL--PQLSETQKLSLVRPIRPSEILDSLKSMPPNKSPGPDGFTSEFFVKAWHIVGQD 2364
             H+     +LS T    LV+PI   EI  +L  +   K+PG DGF S FF K+W ++ Q+
Sbjct: 420  LHVVRVGAKLSATSCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQE 479

Query: 2363 VINGIQSFFSNFSLPRCINSAAIALIPKVDSPQSMSQFRPISCCNVLYKCIAKILATRLK 2184
            +  GI  FF N  + + IN  A+ LIPK+D  +    +RPI+CC+ LYK I+KIL  RL+
Sbjct: 480  IYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQ 539

Query: 2183 PLMEDIISCSQAAFVPKRSIGDNVLLAQALCRNYHLLSGAPRCTIKLDISKAFDSLNLSF 2004
             ++ +++ C+Q  F+P+R IGDN+LLA  L R Y+    +PRC IK+DI KA+DS+   F
Sbjct: 540  AVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVF 599

Query: 2003 IIYTLRKMNFPEMFIEWISICINSCMYSIKVNGSLEGYFKGNSGIRQGDPLSPFLFIIAM 1824
            +   L+++ FP MFI WI  C+ +  YSI +NG     F    G+RQGDPLSPFLF ++M
Sbjct: 600  LESMLKELGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSM 659

Query: 1823 EVMTACIKDQTKDSSFTFHSRCKKLDLSHVIFADDVLLFSRGDSSSVAALMKGVSIFSKL 1644
            E ++ C+ +  KD  F FH +C+++ L+H++FADD+L+F+R D+SS++ +M   + FSK 
Sbjct: 660  EYLSRCMGNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKA 719

Query: 1643 SGLHLNMQKSSIFFGNVNPVVREEILCSTGLNLGTMPLTYLGLPLITSRLNKSICSPLVM 1464
            SGL  +++KS I+FG V     E++     + +G++P  YLG+PL + +LN S C PL+ 
Sbjct: 720  SGLQASIEKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLID 779

Query: 1463 KLCKRINSWTNRFLSFAGRLRLIKSILSSIQSYWSLYMFLPKGVLEQVQSMFAKFLWGGT 1284
            K+  R   W    LS+AGRL+L+K+IL S+Q+YW     LPK +++ V++   KFLW GT
Sbjct: 780  KITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGT 839

Query: 1283 AAVSPHYKVSWNICCLPTQEGGLGIRDATTWNDAAMIFQLWRIIKNQKSLWIQWFRTYVL 1104
               S    V+W+    P   GGL + +   WN AA++  LW I   Q  LW++W   Y +
Sbjct: 840  VDTSYKAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYI 899

Query: 1103 KSKTIWETKPTAASSWSVRKILNSK 1029
            K + I     ++ +SW +RKI  S+
Sbjct: 900  KRQNIENVTVSSNTSWILRKIFESR 924


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
            [Arabidopsis thaliana]
          Length = 1164

 Score =  587 bits (1513), Expect = e-164
 Identities = 327/1011 (32%), Positives = 534/1011 (52%), Gaps = 18/1011 (1%)
 Frame = -2

Query: 3488 IVSFVYGSNYYLDRRNLWADLSHIQSTININYNNPPWCLLGDFNSCIRPEESNRGNGWTT 3309
            ++SFVY S   + R+ LW ++    +   +   + PW +LGDFN  + P E +  +G+  
Sbjct: 2    VLSFVYASTDEVTRQILWNEIVDFSNDPCVI--DKPWTVLGDFNQILHPSEHSTSDGFNV 59

Query: 3308 SMHD--LNNCLLQLGLTDLKSTGSHYTWRSSCRPDALQRKLDRILVNDTWLSNLPNSFAN 3135
                      +L   LTDL   G+ +TW +      + +KLDRILVND W +  P+S   
Sbjct: 60   DRPTRIFRETILLASLTDLSFRGNTFTWWNKRSRAPVAKKLDRILVNDKWTTTFPSSLGL 119

Query: 3134 FMQRGLSDHTPAAVNLGVLTNNIHKPFQLFQHILAHPDFLSVVASAWLE-SVRGSDWFVL 2958
            F +   SDH+   ++L   +    KPF+    +L   +FLS++   W   SV GS  + +
Sbjct: 120  FGEPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKDENFLSLICLKWFSTSVTGSAMYRV 179

Query: 2957 TAKLKRTKKAIKNLN-SSFGNVHDAVAAARADLQQFQIMQSVSPSLEETSEELKLMQNLQ 2781
            + KLK  KK I++ +  ++ ++      A   L   Q +   SP     + E +  +  +
Sbjct: 180  SVKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLAQSVLLASPCPSNAAIEAETQRKWR 239

Query: 2780 LALKKEELFLKQKSKVHWLKVGDGNNRYFFNSCRGRWNINRIVTLQDEMGNSVSDHKGLS 2601
            +  + E  F  Q+S+V+WL+ GD N+ YF      R ++N I  L D +G+ +   + L 
Sbjct: 240  ILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASARQSLNHIHFLSDPVGDRIEGQQNLE 299

Query: 2600 QIATNYFQTILGEERPVDPFPD----HITLPQLSETQKLSLVRPIRPSEILDSLKSMPPN 2433
                 YFQ+ LG E+ +  F      ++   + S  Q++SL  P    +I ++  S+P N
Sbjct: 300  NHCVEYFQSNLGSEQGLPLFEQADISNLLSYRCSPAQQVSLDTPFSSEQIKNAFFSLPRN 359

Query: 2432 KSPGPDGFTSEFFVKAWHIVGQDVINGIQSFFSNFSLPRCINSAAIALIPKVDSPQSMSQ 2253
            K+ GPDGF+ EFF   W I+G +V   I  FF++  L +  N+  + LIPK+ +  SMS 
Sbjct: 360  KASGPDGFSPEFFCACWPIIGGEVTEAIHEFFTSGKLLKQWNATNLVLIPKITNASSMSD 419

Query: 2252 FRPISCCNVLYKCIAKILATRLKPLMEDIISCSQAAFVPKRSIGDNVLLAQALCRNYHLL 2073
            FRPISC N +YK I+K+L  RLK  +   IS SQ+AF+P R   +NVLLA  L   Y+  
Sbjct: 420  FRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHGYNKK 479

Query: 2072 SGAPRCTIKLDISKAFDSLNLSFIIYTLRKMNFPEMFIEWISICINSCMYSIKVNGSLEG 1893
            + AP   +K+D+ KAFDS+   FI+  LR +N PE F  WI  C+++  +S+ +NG   G
Sbjct: 480  NIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNGHSAG 539

Query: 1892 YFKGNSGIRQGDPLSPFLFIIAMEVMTACIKDQTKDSSFTFHSRCKKLDLSHVIFADDVL 1713
            +F  + G+RQGDP+SP+LF++AMEV +  ++ +       +H +  +L++SH++FADDV+
Sbjct: 540  HFWSSKGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVM 599

Query: 1712 LFSRGDSSSVAALMKGVSIFSKLSGLHLNMQKSSIFFGNVNPVVREEILCSTGLNLGTMP 1533
            +F  G SSS+  +++ +  F+  SGL +N  K+ ++   ++     + + S G  LG++P
Sbjct: 600  IFFDGKSSSLHGIVESLEDFAGWSGLLMNTNKTQLYHAGLSQ-SESDSMASYGFKLGSLP 658

Query: 1532 LTYLGLPLITSRLNKSICSPLVMKLCKRINSWTNRFLSFAGRLRLIKSILSSIQSYWSLY 1353
            + YLGLPL++ +L  +  +PL+ K+  R NSW  R LSFAGR++L+ S++S I ++W   
Sbjct: 659  VRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSFAGRVQLLASVISGIVNFWISS 718

Query: 1352 MFLPKGVLEQVQSMFAKFLWGGTAAVSPHYKVSWNICCLPTQEGGLGIRDATTWNDAAMI 1173
              LP G +++++S+ ++FLW          KV+W+  CLP  EGG+G+R     N    +
Sbjct: 719  FILPLGCIKKIESLCSRFLWSSRIDKKGIAKVAWSQVCLPKAEGGIGLRRFAVSNRTLYL 778

Query: 1172 FQLWRIIKNQKSLWIQWFRTYVL-KSKTIWETKPTAASSWSVRKILNSKHKASQYLQYIV 996
              +W +  N  SLW+ W + + L KS + W        SW+ + +L  +  A ++++  V
Sbjct: 779  RMIWLLFSNSGSLWVAWHKQHSLGKSTSFWNQPEKPHDSWNWKCLLRLRVVAERFIRCNV 838

Query: 995  GTNSSHSLWYDPWPGQXXXXXXXXXXXXXXXXSH-DAKVCSFQSGNSW--AQLPSNHYLA 825
            G     S W+D W                    H +AK+    +   W  A   S+  L+
Sbjct: 839  GNGRDASFWFDNWTPFGPLIKFLGNEGPRDLRVHLNAKISDVCTSEGWSIADPRSDQALS 898

Query: 824  TEVRHLLASIP--IQRFDTISWNGSRHI----NISTIWNSIRSTGSSPPWVTVVWSPWMV 663
                    S+P   Q  D+  W     +    + +  W+++R + +  PW   VW     
Sbjct: 899  LHTHLTNISMPSDAQDLDSYDWVVDNKVCQGFSAAATWSALRPSSAPVPWARAVWFKGAT 958

Query: 662  SKCSFILWLALMNRLLTKDRMLKFGMNVDQSCILCNAGVETAAHLFADCNF 510
             K +F LW A ++RL TK R+  +GM +D +C LC+   ET  HLF  C+F
Sbjct: 959  PKHAFHLWTAHLDRLPTKVRLASWGMQIDTTCGLCSLHPETRDHLFLSCDF 1009