BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Bupleurum21_contig00004548
         (891 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   296   6e-78
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   270   3e-70
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...   259   6e-67
ref|NP_175971.3| transcription initiation factor TFIIH subunit H...   255   8e-66
ref|XP_002310512.1| predicted protein [Populus trichocarpa] gi|2...   253   5e-65

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  296 bits (757), Expect = 6e-78
 Identities = 153/246 (62%), Positives = 188/246 (76%), Gaps = 6/246 (2%)
 Frame = +2

Query: 2    EALTRSKQVELANEASNAHVEQGRSDRISQLAEMEDLQGPRDHPVAPLSIKDPRDYFDSQ 181
            EAL +SK+VE ANE S+  V + R +RIS++ E+EDLQ PRD P A L IKDPRDYFDSQ
Sbjct: 357  EALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQ 416

Query: 182  QVDAHE---ESQFGKKNKKCILNAHEAYGSLRKSIAEIKGLGLTDPIVKPEVAIKVLNEL 352
            Q +A +   ++  G K  KC L+  EAYGSLR  I+EIK +GL+DPIVKP++A+KVLN L
Sbjct: 417  QANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGL 476

Query: 353  TQRISNTKYNLGKNPQNKFLDGLPSMTKEELLHQWTSIQELLKHFWSSYPIATTYLHIKV 532
            TQ IS+TK++LGKNPQ   LD LP +TKEELLH WTSIQELL+HFWSSYPI TTYL+ K 
Sbjct: 477  TQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKA 536

Query: 533  DKVKDALGKIKEKLQDIKSSVPHELRHPVSLLVQPMIQAIEAAVAHYYAE---RSTESVE 703
             ++KDA+ +I  KLQ+IK SV  + RH VSLLVQPM+QA++AA AHY A+   RS  S E
Sbjct: 537  SRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQALDAAFAHYDADQQKRSARSGE 596

Query: 704  RPNGFV 721
            RPNGFV
Sbjct: 597  RPNGFV 602


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  270 bits (690), Expect = 3e-70
 Identities = 141/241 (58%), Positives = 176/241 (73%), Gaps = 3/241 (1%)
 Frame = +2

Query: 2    EALTRSKQVELANEASNAHVEQGRSDRISQLAEMEDLQGPRDHPVAPLSIKDPRDYFDSQ 181
            EAL +SK+VE ANE S+  V + R +RIS++ E+EDLQ PRD P A L IKDPRDYFDSQ
Sbjct: 400  EALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRDYFDSQ 459

Query: 182  QVDAHE---ESQFGKKNKKCILNAHEAYGSLRKSIAEIKGLGLTDPIVKPEVAIKVLNEL 352
            Q +A +   ++  G K  KC L++ EAYGSLR  I+EIK +GL+DPIVKP++A+KVLN L
Sbjct: 460  QANALKTLGDTLAGSKQIKCSLSSQEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGL 519

Query: 353  TQRISNTKYNLGKNPQNKFLDGLPSMTKEELLHQWTSIQELLKHFWSSYPIATTYLHIKV 532
            TQ IS+TK++LGKNPQ   LD LP +TKEELLH WTSIQELL+HFWSSYPI TTYL+ K 
Sbjct: 520  TQNISSTKFHLGKNPQESVLDRLPIITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKA 579

Query: 533  DKVKDALGKIKEKLQDIKSSVPHELRHPVSLLVQPMIQAIEAAVAHYYAERSTESVERPN 712
             ++KDA+ +I  KLQ+IK SV  + RH VSLLVQPM+Q     +      R +E  E P 
Sbjct: 580  SRLKDAMSQIYPKLQEIKESVQSDFRHQVSLLVQPMLQRRRETLKR---RRRSEPQEGPG 636

Query: 713  G 715
            G
Sbjct: 637  G 637


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1-like [Cucumis sativus]
          Length = 729

 Score =  259 bits (662), Expect = 6e-67
 Identities = 136/245 (55%), Positives = 173/245 (70%), Gaps = 6/245 (2%)
 Frame = +2

Query: 2    EALTRSKQVELANEASNAHVEQGRSDRISQLAEMEDLQGPRDHPVAPLSIKDPRDYFDSQ 181
            +AL RSK     NE+  A       DRIS++  +EDLQ P  HP APL IKDPRDYFD+Q
Sbjct: 490  DALVRSKHAVEGNESQTA------LDRISRMTAIEDLQAPHSHPFAPLCIKDPRDYFDAQ 543

Query: 182  QVDAH---EESQFGKKNKKCILNAHEAYGSLRKSIAEIKGLGLTDPIVKPEVAIKVLNEL 352
            Q +A    ++++ G +  KC L+  EAYGSLR+SI+EIK  G   PI+KPEVA+ V N L
Sbjct: 544  QANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGL 603

Query: 353  TQRISNTKYNLGKNPQNKFLDGLPSMTKEELLHQWTSIQELLKHFWSSYPIATTYLHIKV 532
            TQ IS+TKY LGKNPQ   L+ LP+ TKEELLH W SIQELLKHFWSSYPI T+YL+ KV
Sbjct: 604  TQNISSTKYQLGKNPQESILESLPNPTKEELLHHWISIQELLKHFWSSYPITTSYLYTKV 663

Query: 533  DKVKDALGKIKEKLQDIKSSVPHELRHPVSLLVQPMIQAIEAAVAHYYAE---RSTESVE 703
             ++KDA+ KI  +L++IK +V  + RH VSLLV+PM QA++AA  H+ A+   RS +S E
Sbjct: 664  SRLKDAMAKIYRQLEEIKETVVADFRHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGE 723

Query: 704  RPNGF 718
            R NG+
Sbjct: 724  RLNGY 728


>ref|NP_175971.3| transcription initiation factor TFIIH subunit H1 [Arabidopsis
            thaliana] gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
            Full=Probable RNA polymerase II transcription factor B
            subunit 1-1; AltName: Full=General transcription and DNA
            repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
            Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332195172|gb|AEE33293.1| transcription initiation
            factor TFIIH subunit H1 [Arabidopsis thaliana]
          Length = 591

 Score =  255 bits (652), Expect = 8e-66
 Identities = 133/243 (54%), Positives = 172/243 (70%), Gaps = 3/243 (1%)
 Frame = +2

Query: 2    EALTRSKQVELANEASNAHVEQGRSDRISQLAEMEDLQGPRDHPVAPLSIKDPRDYFDSQ 181
            EALTR KQV  A+  +     Q R +R+S++A MEDLQ P++ P+APLSIKDPRDYF+SQ
Sbjct: 352  EALTRVKQVSKADGETTKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPRDYFESQ 411

Query: 182  QVDAHEESQFGKKNKKCILNAHEAYGSLRKSIAEIKGLGLTDPIVKPEVAIKVLNELTQR 361
            Q +     +  K  K+   N HEAYG L++SI EI+  GL+DP++KPEV+ +V + LT+ 
Sbjct: 412  QGNVLNVPRGAKGLKR---NVHEAYGLLKESILEIRATGLSDPLIKPEVSFEVFSSLTRT 468

Query: 362  ISNTKYNLGKNPQNKFLDGLPSMTKEELLHQWTSIQELLKHFWSSYPIATTYLHIKVDKV 541
            I+  K   GKNP+  FLD LP  TK+E+LH WTSIQELLKHFWSSYPI TTYLH KV K+
Sbjct: 469  IATAKNINGKNPRESFLDRLPKSTKDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKL 528

Query: 542  KDALGKIKEKLQDIKSSVPHELRHPVSLLVQPMIQAIEAAVAHYYAE---RSTESVERPN 712
            KDA+     KL+ +K SV  +LRH VSLLV+PM QA++AA  HY  +   R+ +S ERPN
Sbjct: 529  KDAMSNTYSKLEAMKESVQSDLRHQVSLLVRPMQQALDAAFHHYEVDLQRRTAKSGERPN 588

Query: 713  GFV 721
            G+V
Sbjct: 589  GYV 591


>ref|XP_002310512.1| predicted protein [Populus trichocarpa] gi|222853415|gb|EEE90962.1|
            predicted protein [Populus trichocarpa]
          Length = 603

 Score =  253 bits (645), Expect = 5e-65
 Identities = 138/246 (56%), Positives = 176/246 (71%), Gaps = 7/246 (2%)
 Frame = +2

Query: 2    EALTRSKQVELA-NEASNAHVEQGRSDRISQLAEMEDLQGPRDHPVAPLSIKDPRDYFDS 178
            EAL +SKQ + A NE +  +  Q R  RIS++ E++DLQ   D P+APLSIKDPRDYFDS
Sbjct: 357  EALKQSKQGQNASNEETYMNANQDRLSRISKMMEIDDLQASSDLPLAPLSIKDPRDYFDS 416

Query: 179  QQVDAHEESQ---FGKKNKKCILNAHEAYGSLRKSIAEIKGLGLTDPIVKPEVAIKVLNE 349
            QQ  A + S+    G    K IL+A E+Y SLR SI+ IK  GL DPI+KPEVA+KVL+ 
Sbjct: 417  QQATALKNSRDTSIGTDPVKRILSAEESYASLRDSISLIKTTGLVDPIIKPEVAVKVLSV 476

Query: 350  LTQRISNTKYNLGKNPQNKFLDGLPSMTKEELLHQWTSIQELLKHFWSSYPIATTYLHIK 529
            LT  IS+TKY+ GKN     LD LP+  KEELL+ WTS+QELLKH+WSSYPI TTYL+ K
Sbjct: 477  LTHNISSTKYDTGKNHGLSVLDTLPNTIKEELLYHWTSLQELLKHYWSSYPITTTYLYTK 536

Query: 530  VDKVKDALGKIKEKLQDIKSSVPHELRHPVSLLVQPMIQAIEAAVAHYYAE---RSTESV 700
            V ++KDA+ KI  +LQ++K SV  +LRH V+LL++PM QA+EAA+ HY AE   RS  S 
Sbjct: 537  VSRLKDAMSKIDSQLQELKESVQSDLRHQVTLLLRPMQQALEAAMQHYDAELQKRSARSG 596

Query: 701  ERPNGF 718
            +R NG+
Sbjct: 597  DRSNGY 602