BLASTX nr result
ID: Bupleurum21_contig00004543
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Bupleurum21_contig00004543
(2608 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g... 684 0.0
emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera] 681 0.0
ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus ... 600 e-169
ref|XP_002329331.1| predicted protein [Populus trichocarpa] gi|2... 563 e-158
gb|AEV43362.1| poly C-binding protein [Citrus sinensis] 515 e-143
>ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera] gi|296087281|emb|CBI33655.3| unnamed protein
product [Vitis vinifera]
Length = 676
Score = 684 bits (1764), Expect = 0.0
Identities = 395/682 (57%), Positives = 468/682 (68%), Gaps = 25/682 (3%)
Frame = +1
Query: 109 MEGNKRSFFRKQQSNTQFKRKGGQRI--WNNSNREQPVEDSYPSETVYRILCPSRXXXXX 282
MEG +R F+K+ N QFKRKG + WNNS+ EQ +S ++TVYRILCPS+
Sbjct: 1 MEGTRRGSFKKRP-NFQFKRKGSNKRGRWNNSSHEQSFGNSQVADTVYRILCPSKKIGGV 59
Query: 283 XXXXXXXXXALREETQAKITVADSVSGSEERVIIIYSSSTKIPEKHCVESNDGDLTTDEK 462
ALREETQAKITVADSV GS+ERVIIIYS+ TK P++H +SN+ D +E+
Sbjct: 60 IGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSAPTKNPKEH--DSNE-DPEMEEE 116
Query: 463 DELMEPHCAAQVALLKVHDRIIEEDIVGGSD-EAGNGN-VVTARLLVPNNMVGCLLGKKG 636
+ MEPHC AQ AL+KVH+RIIEED+ GG++ E N N VVTARLLVPNNMVGCLLGK+G
Sbjct: 117 QDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVVTARLLVPNNMVGCLLGKRG 176
Query: 637 DVIQRLRSETGANIRVLPADHIPICAMETDELVQISGKPVVARKALYQVSTLLHQNPRKD 816
DVIQRLRSETGANIRVLPA+H+P CAM +DELVQISGKP VA+KALY+VSTLLHQNPRKD
Sbjct: 177 DVIQRLRSETGANIRVLPAEHLPTCAMSSDELVQISGKPAVAKKALYEVSTLLHQNPRKD 236
Query: 817 QPPVGFPNAHGSPGVHTPHHLMGKIPHE-DPIWSQRNASFHGGPQ--WPGRYEGEHSRFG 987
+PP FP + G G H P MG +P +P+WS RN++ G P W G Y + S
Sbjct: 237 KPPSSFPMSFGGQGFHPPGASMGNMPPPGNPMWSNRNSNSQGVPPMPWMGGYRSQPSVVP 296
Query: 988 RGGYDDIPGGYGEVVPTDFSMKILCSXXXXXXXXXXXXFNVKQVQQETGASIHVEDVSAE 1167
GG+D + G+G +FSMKILC FNVKQ+QQETGASIHVED AE
Sbjct: 297 -GGFDGVHAGHGGEASGEFSMKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAE 355
Query: 1168 SDERVIRVSSIEAPWNPRSQTIDAIFLLQNKTSEFSDKGTVTTRLLVPSSKVGCILGQGG 1347
S+ERVIRVSS EA WNPRSQTI+AI LQNKTSE+SDKG +TTRLLVPSSKVGCILGQGG
Sbjct: 356 SEERVIRVSSFEALWNPRSQTIEAILQLQNKTSEYSDKGGMTTRLLVPSSKVGCILGQGG 415
Query: 1348 HVINEMRRRTQADIRVCSKEDKPKCASEDEELVQISGNPVVAKDALAEISSRLRSRCLRD 1527
HVINEMRRRTQADIRV SKEDKPKCAS+DEELVQISGN VAKDALAEI+SRLR RCLRD
Sbjct: 416 HVINEMRRRTQADIRVYSKEDKPKCASDDEELVQISGNFGVAKDALAEIASRLRVRCLRD 475
Query: 1528 AKTAGEPAPVRPHTGYGDPGKVHGGPPPLLGSNPIGIDSPGAYNHFKGRGREYDELSSYP 1707
A EPAPV P G+G PGK+ GG P S +G S G + KG G EY E SYP
Sbjct: 476 ANGGVEPAPVGPVPGFGHPGKLPGGLPS--SSGALGAGSSGGFELSKGGGLEY-EPQSYP 532
Query: 1708 IYPSATGYPTNRRGMELKMPKNAMGSAMHSGRSDASN---IAGARMKHQDPISARSESYI 1878
+ P+ATGY ME K+P N++ S + G + +N +AGAR+K QDP S SE +
Sbjct: 533 VPPAATGYHNVNSSMESKIPNNSVSSVIGMGGGNVANMSEMAGARVKLQDPQSGGSECVV 592
Query: 1879 DSR--YQHFNDAETMHNSFIAS---DGPSNNHQHGSYQEYNVHG----QNFN-PQHGSYQ 2028
+ R +H A+++ +F+AS G + N Q GSYQ + H QN N P YQ
Sbjct: 593 EIRGSSEHLTAAQSILQAFMASAGAGGQNMNPQQGSYQNMSAHPQAPYQNMNAPPQVPYQ 652
Query: 2029 DVNDGDQY-----NSRAQYDSY 2079
+N Q N AQ SY
Sbjct: 653 SMNAPPQQAAAYPNMSAQQSSY 674
>emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]
Length = 668
Score = 681 bits (1756), Expect = 0.0
Identities = 383/655 (58%), Positives = 458/655 (69%), Gaps = 12/655 (1%)
Frame = +1
Query: 109 MEGNKRSFFRKQQSNTQFKRKGGQRI--WNNSNREQPVEDSYPSETVYRILCPSRXXXXX 282
MEG +R F+K+ N QFKRKG + WNNS+ EQ +S ++TVYRILCPS+
Sbjct: 29 MEGXRRGSFKKRP-NFQFKRKGSNKRGRWNNSSHEQSFGNSQVADTVYRILCPSKKIGGV 87
Query: 283 XXXXXXXXXALREETQAKITVADSVSGSEERVIIIYSSSTKIPEKHCVESNDGDLTTDEK 462
ALREETQAKITVADSV GS+ERVIIIYS+ TK P++H +++ D +E+
Sbjct: 88 IGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSAPTKNPKEH---NSNEDPEREEE 144
Query: 463 DELMEPHCAAQVALLKVHDRIIEEDIVGGSD-EAGNGN-VVTARLLVPNNMVGCLLGKKG 636
+ MEPHC AQ AL+KVH+RIIEED+ GG++ E N N VVTARLLVPNNMVGCLLGK+G
Sbjct: 145 QDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVVTARLLVPNNMVGCLLGKRG 204
Query: 637 DVIQRLRSETGANIRVLPADHIPICAMETDELVQISGKPVVARKALYQVSTLLHQNPRKD 816
DVIQRLRSETGANIRVLPA+H+P CAM +DELVQISGKP VA+KALY+VSTLLHQNPRKD
Sbjct: 205 DVIQRLRSETGANIRVLPAEHLPTCAMSSDELVQISGKPAVAKKALYEVSTLLHQNPRKD 264
Query: 817 QPPVGFPNAHGSPGVHTPHHLMGKIPHE-DPIWSQRNASFHGGPQ--WPGRYEGEHSRFG 987
+PP FP + G G H P MG +P +P+WS RN++ G P W G Y + S
Sbjct: 265 KPPSSFPMSFGGQGFHPPGASMGNMPPPGNPMWSNRNSNSQGVPPMPWMGGYRSQPSVVP 324
Query: 988 RGGYDDIPGGYGEVVPTDFSMKILCSXXXXXXXXXXXXFNVKQVQQETGASIHVEDVSAE 1167
GG+D + G+G +FSMKILC FNVKQ+QQETGASIHVED AE
Sbjct: 325 -GGFDGVHAGHGGEASGEFSMKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAE 383
Query: 1168 SDERVIRVSSIEAPWNPRSQTIDAIFLLQNKTSEFSDKGTVTTRLLVPSSKVGCILGQGG 1347
S+ERVIRVSS EA WNPRSQTI+AI LQNKTSE+SDKG +TTRLLVPSSKVGCILGQGG
Sbjct: 384 SEERVIRVSSFEALWNPRSQTIEAILQLQNKTSEYSDKGGMTTRLLVPSSKVGCILGQGG 443
Query: 1348 HVINEMRRRTQADIRVCSKEDKPKCASEDEELVQISGNPVVAKDALAEISSRLRSRCLRD 1527
HVINEMRRRTQADIRV SKEDKPKCAS+DEELVQISGN VAKDALAEI+SRLR RCLRD
Sbjct: 444 HVINEMRRRTQADIRVYSKEDKPKCASDDEELVQISGNFGVAKDALAEIASRLRVRCLRD 503
Query: 1528 AKTAGEPAPVRPHTGYGDPGKVHGGPPPLLGSNPIGIDSPGAYNHFKGRGREYDELSSYP 1707
A EPAPV P G+G PGK+ GG P G+ +G S G + KG G EY E SYP
Sbjct: 504 ANGGVEPAPVGPVPGFGHPGKLPGGLPSSSGA--LGAGSSGGFELSKGGGLEY-EPQSYP 560
Query: 1708 IYPSATGYPTNRRGMELKMPKNAMGSAMHSGRSDASNI---AGARMKHQDPISARSESYI 1878
+ P+ATGY ME K+P N++ S + G + +N+ AGAR+K QDP S SE +
Sbjct: 561 VPPAATGYHNVNSSMESKIPNNSVSSVIGMGGGNVANMSEMAGARVKLQDPQSGGSECVV 620
Query: 1879 DSR--YQHFNDAETMHNSFIASDGPSNNHQHGSYQEYNVHGQNFNPQHGSYQDVN 2037
+ R +H A+++ +F+AS G GQN NPQ GSYQ+++
Sbjct: 621 EIRGSSEHLTAAQSILQAFMASAGAG--------------GQNMNPQQGSYQNMS 661
>ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223544094|gb|EEF45619.1| Poly(rC)-binding protein,
putative [Ricinus communis]
Length = 537
Score = 600 bits (1548), Expect = e-169
Identities = 336/548 (61%), Positives = 382/548 (69%), Gaps = 7/548 (1%)
Frame = +1
Query: 109 MEGNKRSFFRKQQSNTQFKRKGGQRI--WNNSNREQPVEDSYPSETVYRILCPSRXXXXX 282
M+GNKR+ F+K Q+N QFKRKG R WNNS RE+ + P +TVYRILCPSR
Sbjct: 1 MDGNKRNVFKKYQNN-QFKRKGVTRKGKWNNSGREESSGNPLPVDTVYRILCPSRKIGGV 59
Query: 283 XXXXXXXXXALREETQAKITVADSVSGSEERVIIIYSSSTKIPEKHCVESNDGDLTTDEK 462
LREETQAKITVAD V GS+ERVIIIYSS KI H ++ DLT + +
Sbjct: 60 IGKGGGIIKGLREETQAKITVADPVPGSDERVIIIYSSPEKISRNH---NDHEDLTMENE 116
Query: 463 DELMEPHCAAQVALLKVHDRIIEEDIVGG--SDEAGNGNVVTARLLVPNNMVGCLLGKKG 636
++MEP+CAAQ ALLKVHDRI+EED+ GG SD+ VTARLLVPNNMVGCLLGK+G
Sbjct: 117 QDIMEPYCAAQDALLKVHDRIVEEDLFGGMTSDDDNENGFVTARLLVPNNMVGCLLGKRG 176
Query: 637 DVIQRLRSETGANIRVLPADHIPICAMETDELVQISGKPVVARKALYQVSTLLHQNPRKD 816
DVIQRLRSETGANIRVLPADH+P CAM TDELVQIS KP VA+KALY+VSTLLHQNPRKD
Sbjct: 177 DVIQRLRSETGANIRVLPADHLPTCAMSTDELVQISAKPDVAKKALYEVSTLLHQNPRKD 236
Query: 817 QPPVGFPNAHGSPGVHTPHHLMGKIPH-EDPIWSQRNASFHGGPQWP--GRYEGEHSRFG 987
+PP P + H P M +P P+W N+S H P P GRY + S FG
Sbjct: 237 KPP-SVPMPYSGQSFHPPGGPMKNLPPLGSPMWPHHNSS-HSIPPMPIMGRYGSQSSGFG 294
Query: 988 RGGYDDIPGGYGEVVPTDFSMKILCSXXXXXXXXXXXXFNVKQVQQETGASIHVEDVSAE 1167
GG+DD+P G+ +FSMKILCS NVK VQQ+TGASIHVED SAE
Sbjct: 295 PGGFDDVPRGHVAEPSAEFSMKILCSAGKIGGVIGKGGSNVKVVQQDTGASIHVEDASAE 354
Query: 1168 SDERVIRVSSIEAPWNPRSQTIDAIFLLQNKTSEFSDKGTVTTRLLVPSSKVGCILGQGG 1347
SDERVIRVS+ EA WNPRSQTIDAI LQNKTS+FS+KGT+TTRLLVPSSKVGCILGQGG
Sbjct: 355 SDERVIRVSASEALWNPRSQTIDAILQLQNKTSDFSEKGTITTRLLVPSSKVGCILGQGG 414
Query: 1348 HVINEMRRRTQADIRVCSKEDKPKCASEDEELVQISGNPVVAKDALAEISSRLRSRCLRD 1527
VINEMRRRTQADIRV SK++KPKCASEDEELVQISG VAKDALAEI+SRLR R LRD
Sbjct: 415 QVINEMRRRTQADIRVYSKDEKPKCASEDEELVQISGKFGVAKDALAEIASRLRVRTLRD 474
Query: 1528 AKTAGEPAPVRPHTGYGDPGKVHGGPPPLLGSNPIGIDSPGAYNHFKGRGREYDELSSYP 1707
EP PV P G+G + G S +G S G Y + EY E SYP
Sbjct: 475 VNAGAEPGPVGPIQGFGAARSLPGRG----SSGMMGASSSGGYEPLRDTEHEY-ESHSYP 529
Query: 1708 IYPSATGY 1731
+ P+A GY
Sbjct: 530 VPPAAVGY 537
>ref|XP_002329331.1| predicted protein [Populus trichocarpa] gi|222870785|gb|EEF07916.1|
predicted protein [Populus trichocarpa]
Length = 563
Score = 563 bits (1452), Expect = e-158
Identities = 314/524 (59%), Positives = 367/524 (70%), Gaps = 8/524 (1%)
Frame = +1
Query: 109 MEGNKRSFFRKQQSNTQFKRKGGQRI----WNNSNREQPVEDSYPSETVYRILCPSRXXX 276
M+GN+R +F+K +N FKRKG W++S+ E E S +TVYRILCPSR
Sbjct: 1 MDGNRRKYFKKPGNNL-FKRKGVSSSRKGKWSDSHGE---ECSGDGDTVYRILCPSRKIG 56
Query: 277 XXXXXXXXXXXALREETQAKITVADSVSGSEERVIIIYSSSTKIPEKHCVESNDGDLTTD 456
ALREETQ+KITVADSV GS+ERVIIIYSSS K P K ++ ++G +
Sbjct: 57 GVIGKGGNIVKALREETQSKITVADSVQGSDERVIIIYSSSDKPPRK--MDGDEGLPAGN 114
Query: 457 EKDELMEPHCAAQVALLKVHDRIIEEDIVGG--SDEAGNGNVVTARLLVPNNMVGCLLGK 630
+ E EPHCAAQ ALLKVHDRI+EED+ GG SD+ + NVVTARLLVPNNMVGC+LGK
Sbjct: 115 GQQEAFEPHCAAQDALLKVHDRIVEEDLFGGMASDDDNDNNVVTARLLVPNNMVGCVLGK 174
Query: 631 KGDVIQRLRSETGANIRVLPADHIPICAMETDELVQISGKPVVARKALYQVSTLLHQNPR 810
+GDVIQRLRSETGANIRVLPADH+P CAM+TDELVQISGKP VA++ALY++S LLHQNPR
Sbjct: 175 RGDVIQRLRSETGANIRVLPADHLPSCAMDTDELVQISGKPAVAKRALYEISILLHQNPR 234
Query: 811 KDQPPVGFPNAHGSPGVHTPHHLMGK-IPHEDPIWSQRNASFHGGPQWPGRYEGEHSRFG 987
KD+ P P +G H P M +P +P+W RN++ H P W G Y S FG
Sbjct: 235 KDKLP-SVPMPYGGRTFHPPSDSMANMLPPGNPMWPHRNSTPHSMP-WMGEYGNHPSEFG 292
Query: 988 RGGYDDIPGGYGEVVPTDFSMKILCSXXXXXXXXXXXXFNVKQVQQETGASIHVEDVSAE 1167
GG++ +P G+G +FSMKILCS NVK VQQETGASIHVED SAE
Sbjct: 293 PGGFNGVPPGHGREPSAEFSMKILCSTGKIGGVIGKGGSNVKIVQQETGASIHVEDASAE 352
Query: 1168 SDERVIRVSSIEAPWNPRSQTIDAIFLLQNKTSEFSDKGTVTTRLLVPSSKVGCILGQGG 1347
S+ER IRVS+ E WNPRSQTIDAI LQ+KTS+FS+KG + TRLLVPSSKVGCILGQGG
Sbjct: 353 SEERAIRVSAFEGLWNPRSQTIDAILQLQDKTSDFSEKGMIITRLLVPSSKVGCILGQGG 412
Query: 1348 HVINEMRRRTQADIRVCSKEDKPKCASEDEELVQISGNPVVAKDALAEISSRLRSRCLRD 1527
VINEMRRR QADIRV K DKPKCAS+DEELVQISGN VAKDALAEI+SRLR+R LRD
Sbjct: 413 QVINEMRRRLQADIRVYPKNDKPKCASDDEELVQISGNYGVAKDALAEIASRLRARTLRD 472
Query: 1528 AKTAGEPAPVRPHTGYGDPGKVHG-GPPPLLGSNPIGIDSPGAY 1656
A EP P P G+G + G GP P S + S G Y
Sbjct: 473 ANAGTEPGPAGPVPGFGPARNLPGRGPQP---SGMMAASSSGGY 513
>gb|AEV43362.1| poly C-binding protein [Citrus sinensis]
Length = 569
Score = 515 bits (1327), Expect = e-143
Identities = 277/438 (63%), Positives = 319/438 (72%), Gaps = 9/438 (2%)
Frame = +1
Query: 109 MEGNKRSFFRKQQSNTQFKRKGGQRI----WNNSNREQPVEDSYPSETVYRILCPSRXXX 276
M+ +KR+FF+K+ +N QFKRKG I W+NS+REQ +S P++TVYRILCPSR
Sbjct: 1 MDASKRNFFKKRPNN-QFKRKGVVGIKKGNWSNSSREQSFGNSQPADTVYRILCPSRKIG 59
Query: 277 XXXXXXXXXXXALREETQAKITVADSVSGSEERVIIIYSSSTKIPEKHCVESNDGDLTTD 456
+LREETQAKITVAD++ GSEERVIIIYSS TKI + ++ D D +
Sbjct: 60 GVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPTKIAK---TQNKDDDSAAE 116
Query: 457 EKDELMEPHCAAQVALLKVHDRIIEEDIVGG--SDEAGNGNVVTARLLVPNNMVGCLLGK 630
K E MEPHCAAQ ALLKVHDRIIEED+ GG SD+ + +TARLLVPNNMVGCLLGK
Sbjct: 117 TKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGK 176
Query: 631 KGDVIQRLRSETGANIRVLPADHIPICAMETDELVQISGKPVVARKALYQVSTLLHQNPR 810
+GDVIQRLRSETGANIRVLPAD +P CAM TDE+VQISGKP VA++ALY+VSTLLHQNPR
Sbjct: 177 RGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPR 236
Query: 811 KDQPPVGFPNAHGSPGVHTPHHLMGKI-PHEDPIWSQRNASFHGGPQ--WPGRYEGEHSR 981
KD+PP FP A+G H+P M + P + W RN+S HG P W G Y + SR
Sbjct: 237 KDKPPSSFPQAYGGQNFHSPPAPMADMHPLGNSSWPARNSSLHGMPSTPWMGGYGDQPSR 296
Query: 982 FGRGGYDDIPGGYGEVVPTDFSMKILCSXXXXXXXXXXXXFNVKQVQQETGASIHVEDVS 1161
G G + P G V +FSMKILCS FNVKQ+QQETGASIHVED
Sbjct: 297 MGSGSINSCPPGQMGEVSAEFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAP 356
Query: 1162 AESDERVIRVSSIEAPWNPRSQTIDAIFLLQNKTSEFSDKGTVTTRLLVPSSKVGCILGQ 1341
+SDERVIR S+ E WNPRSQTIDAI LQNKTSEFS+KGT+TTRLLVPSSKVGCILGQ
Sbjct: 357 TDSDERVIRASAFEGLWNPRSQTIDAILQLQNKTSEFSEKGTITTRLLVPSSKVGCILGQ 416
Query: 1342 GGHVINEMRRRTQADIRV 1395
GGHVINEMRRRTQADIRV
Sbjct: 417 GGHVINEMRRRTQADIRV 434
Score = 98.2 bits (243), Expect = 1e-17
Identities = 74/244 (30%), Positives = 107/244 (43%), Gaps = 30/244 (12%)
Frame = +1
Query: 1018 YGEVVPTDFSMKILCSXXXXXXXXXXXXFNVKQVQQETGASIHVEDVSAESDERVIRVSS 1197
+G P D +ILC VK +++ET A I V D S+ERVI + S
Sbjct: 39 FGNSQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYS 98
Query: 1198 I-------------------EAPWNPRSQTIDAIFLLQNK-----------TSEFSDKGT 1287
+ P DA+ + ++ + + ++ T
Sbjct: 99 SPTKIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENST 158
Query: 1288 VTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVCSKEDKPKCASEDEELVQISGNPV 1467
+T RLLVP++ VGC+LG+ G VI +R T A+IRV + P CA +E+VQISG P
Sbjct: 159 ITARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPN 218
Query: 1468 VAKDALAEISSRLRSRCLRDAKTAGEPAPVRPHTGYGDPGKVHGGPPPLLGSNPIGIDSP 1647
VAK AL E+S+ L +D + P YG H P P+ +P+G S
Sbjct: 219 VAKRALYEVSTLLHQNPRKDKPPSSFP------QAYGGQ-NFHSPPAPMADMHPLGNSSW 271
Query: 1648 GAYN 1659
A N
Sbjct: 272 PARN 275